Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_D12
(356 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6FL35|SMI1_CANGA KNR4/SMI1 homolog 31 0.76
sp|Q601G9|TIG_MYCH2 Trigger factor (TF) 30 1.7
sp|Q9Y581|INSL6_HUMAN Insulin-like peptide INSL6 precursor ... 30 2.2
sp|Q02952|AKA12_HUMAN A-kinase anchor protein 12 (A-kinase ... 30 2.2
>sp|Q6FL35|SMI1_CANGA KNR4/SMI1 homolog
Length = 584
Score = 31.2 bits (69), Expect = 0.76
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 46 PKTENEVKENVEAPVTTEHIEAVNAEKVETAPEAEPKEN 162
P E E NVEAP E ++ AE ET +++ K+N
Sbjct: 518 PIEEEEESTNVEAPQVEEEEDSTTAEPAETVSKSKKKKN 556
>sp|Q601G9|TIG_MYCH2 Trigger factor (TF)
Length = 465
Score = 30.0 bits (66), Expect = 1.7
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 1 YK*FKMGNKSGKFEVPKTENEVKENVEAPVTTEHIEAVNAEKVETAPEAE 150
Y+ NK +F V N++KEN A +T E + ++ + VET + E
Sbjct: 223 YQVHTYANKKARFRVKI--NKIKENQPAKLTNEFVASLKIQNVETISQLE 270
>sp|Q9Y581|INSL6_HUMAN Insulin-like peptide INSL6 precursor (Insulin-like peptide 6)
(Relaxin/insulin-like factor 1) [Contains: Insulin-like
peptide INSL6 B chain; Insulin-like peptide INSL6 A
chain]
Length = 213
Score = 29.6 bits (65), Expect = 2.2
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +1
Query: 34 KFEVPKTENEVKENVEAPVTTEHIEAVNAEKVETAPEAEPKE 159
+FE P+T + + PV+T EAVN+ ++++ PE + K+
Sbjct: 79 QFESPQTASPARGRGTNPVSTSWEEAVNSWEMQSLPEYKDKK 120
>sp|Q02952|AKA12_HUMAN A-kinase anchor protein 12 (A-kinase anchor protein 250 kDa) (AKAP
250) (Myasthenia gravis autoantigen gravin)
Length = 1781
Score = 29.6 bits (65), Expect = 2.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +1
Query: 274 GVFGWLKKISFRKDKKQKANADETNEE 354
G GW KK SFRK K+ + A E +E
Sbjct: 302 GWAGWRKKTSFRKPKEDEVEASEKKKE 328
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.309 0.127 0.357
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,516,407
Number of Sequences: 369166
Number of extensions: 180018
Number of successful extensions: 624
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 68,354,980
effective HSP length: 86
effective length of database: 52,467,770
effective search space used: 1678968640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)