Planaria EST Database

DrC_00416

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00416
         (839 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q924T2|RT02_MOUSE  Mitochondrial 28S ribosomal protein S2...   140   6e-33
sp|Q9Y399|RT02_HUMAN  Mitochondrial 28S ribosomal protein S2...   136   6e-32
sp|O67809|RS2_AQUAE  30S ribosomal protein S2                      80   9e-15
sp|Q74IR7|RS2_LACJO  30S ribosomal protein S2                      76   1e-13
sp|Q9CDR4|RS2_LACLA  30S ribosomal protein S2                      76   1e-13
sp|Q5QXS0|RS2_IDILO  30S ribosomal protein S2                      75   3e-13
sp|P49668|RS2_PEDAC  30S ribosomal protein S2                      74   7e-13
sp|Q88VJ4|RS2_LACPL  30S ribosomal protein S2                      73   9e-13
sp|Q73HM1|RS2_WOLPM  30S ribosomal protein S2                      73   1e-12
sp|Q92JF5|RS2_RICCN  30S ribosomal protein S2                      72   1e-12

>sp|Q924T2|RT02_MOUSE Mitochondrial 28S ribosomal protein S2 (S2mt) (MRP-S2)
          Length = 291

 Score =  140 bits (352), Expect = 6e-33
 Identities = 71/163 (43%), Positives = 105/163 (64%)
 Frame = +3

Query: 279 PLSTYDYFGVRNLCTVEDLFKFRIHLGHKNTVRNPYMAPYLFGNRQGIDIIDLNKTIKLL 458
           PL   D+F V+ L +V+ LF+ R+HLGHK   R+ +M PY+FGNR G DIIDL++T   L
Sbjct: 63  PLQHSDFFNVKELFSVKSLFEARVHLGHKAGCRHRFMEPYIFGNRLGQDIIDLDQTALNL 122

Query: 459 GEALNFIAHISFQGGIILFISRHLRVI*FVLSYKIFV*TIPLVEKVAEQCGQYSHCRRWL 638
             ALNF AH++++ GIILF+SR+ +                L+E  A+ CG+Y+H R + 
Sbjct: 123 QLALNFTAHVAYRKGIILFVSRNRQF-------------SHLIETTAQACGEYAHTRYFK 169

Query: 639 GGHLTQPDE*YGVITRLPDCVVFVHSLDSVFLPHVAITESANV 767
           GG LT     +G   RLPD ++F+H+L++VF PHVA+ ++A +
Sbjct: 170 GGLLTNAQLLFGPSVRLPDLIIFLHTLNNVFEPHVAVRDAAKM 212


 Score = 32.0 bits (71), Expect = 2.2
 Identities = 16/39 (41%), Positives = 26/39 (66%)
 Frame = +1

Query: 694 IVLYLFTVLIQFSYHMLRLLSLQMC*IPTVGVVDTNCDP 810
           ++++L T+   F  H+    + +M  IPTVG+VDTNC+P
Sbjct: 189 LIIFLHTLNNVFEPHVAVRDAAKMN-IPTVGIVDTNCNP 226

>sp|Q9Y399|RT02_HUMAN Mitochondrial 28S ribosomal protein S2 (S2mt) (MRP-S2)
          Length = 296

 Score =  136 bits (343), Expect = 6e-32
 Identities = 71/164 (43%), Positives = 104/164 (63%)
 Frame = +3

Query: 276 DPLSTYDYFGVRNLCTVEDLFKFRIHLGHKNTVRNPYMAPYLFGNRQGIDIIDLNKTIKL 455
           +PL   D+F V+ L +V  LF  R+HLGHK   R+ +M PY+FG+R   DIIDL +T   
Sbjct: 65  EPLKHSDFFNVKELFSVRSLFDARVHLGHKAGCRHRFMEPYIFGSRLDHDIIDLEQTATH 124

Query: 456 LGEALNFIAHISFQGGIILFISRHLRVI*FVLSYKIFV*TIPLVEKVAEQCGQYSHCRRW 635
           L  ALNF AH++++ GIILFISR+ +      SY        L+E +A  CG+Y+H R +
Sbjct: 125 LQLALNFTAHMAYRKGIILFISRNRQ-----FSY--------LIENMARDCGEYAHTRYF 171

Query: 636 LGGHLTQPDE*YGVITRLPDCVVFVHSLDSVFLPHVAITESANV 767
            GG LT     +G   RLPD ++F+H+L+++F PHVA+ ++A +
Sbjct: 172 RGGMLTNARLLFGPTVRLPDLIIFLHTLNNIFEPHVAVRDAAKM 215


 Score = 31.6 bits (70), Expect = 2.9
 Identities = 16/39 (41%), Positives = 26/39 (66%)
 Frame = +1

Query: 694 IVLYLFTVLIQFSYHMLRLLSLQMC*IPTVGVVDTNCDP 810
           ++++L T+   F  H+    + +M  IPTVG+VDTNC+P
Sbjct: 192 LIIFLHTLNNIFEPHVAVRDAAKMN-IPTVGIVDTNCNP 229

>sp|O67809|RS2_AQUAE 30S ribosomal protein S2
          Length = 274

 Score = 79.7 bits (195), Expect = 9e-15
 Identities = 41/111 (36%), Positives = 65/111 (58%)
 Frame = +3

Query: 321 TVEDLFKFRIHLGHKNTVRNPYMAPYLFGNRQGIDIIDLNKTIKLLGEALNFIAHISFQG 500
           ++++L +  +H GH  +  NP MAPY++G R GI IIDLNKTI +L +A +F++ +  QG
Sbjct: 5   SMKELLEAGVHFGHSKSRWNPKMAPYIYGVRHGIHIIDLNKTIVMLEDAYHFVSDVIAQG 64

Query: 501 GIILFISRHLRVI*FVLSYKIFV*TIPLVEKVAEQCGQYSHCRRWLGGHLT 653
           G ILF+    +                ++++ AE+CG +    RW+GG LT
Sbjct: 65  GEILFVGTKKQ-------------AKDIIKEEAERCGAFYVNERWVGGLLT 102

>sp|Q74IR7|RS2_LACJO 30S ribosomal protein S2
          Length = 261

 Score = 75.9 bits (185), Expect = 1e-13
 Identities = 41/111 (36%), Positives = 61/111 (54%)
 Frame = +3

Query: 321 TVEDLFKFRIHLGHKNTVRNPYMAPYLFGNRQGIDIIDLNKTIKLLGEALNFIAHISFQG 500
           T++ L +  +H GH+    +P MAPY+F  R GI IIDL KTIK+L +A N++  ++  G
Sbjct: 5   TMKQLLEAGVHFGHQTRRWDPKMAPYIFTQRNGIYIIDLQKTIKMLDDAYNYVKAVAQDG 64

Query: 501 GIILFISRHLRVI*FVLSYKIFV*TIPLVEKVAEQCGQYSHCRRWLGGHLT 653
           G+ LF+    +                 V++ A + GQY   +RWLGG LT
Sbjct: 65  GVFLFVGTKKQ-------------AQDAVKEEATRAGQYYVNQRWLGGTLT 102

>sp|Q9CDR4|RS2_LACLA 30S ribosomal protein S2
          Length = 255

 Score = 75.9 bits (185), Expect = 1e-13
 Identities = 41/128 (32%), Positives = 68/128 (53%)
 Frame = +3

Query: 312 NLCTVEDLFKFRIHLGHKNTVRNPYMAPYLFGNRQGIDIIDLNKTIKLLGEALNFIAHIS 491
           ++ +++ L +  +H GH+    NP M PY+F  R GI +IDL KT+KL+ +A N++ + S
Sbjct: 2   SVISMKQLLEAGVHFGHQTRRWNPKMKPYIFTERNGIHVIDLQKTVKLVDDAYNYVKNAS 61

Query: 492 FQGGIILFISRHLRVI*FVLSYKIFV*TIPLVEKVAEQCGQYSHCRRWLGGHLTQPDE*Y 671
            +G ++LF+    +                 V++ A + GQY    RWLGG LT  +   
Sbjct: 62  QEGAVVLFVGTKKQ-------------AAEAVKEEALRAGQYYVNHRWLGGMLTNWNTIQ 108

Query: 672 GVITRLPD 695
             +TRL +
Sbjct: 109 TRVTRLKE 116

>sp|Q5QXS0|RS2_IDILO 30S ribosomal protein S2
          Length = 242

 Score = 74.7 bits (182), Expect = 3e-13
 Identities = 43/125 (34%), Positives = 61/125 (48%)
 Frame = +3

Query: 321 TVEDLFKFRIHLGHKNTVRNPYMAPYLFGNRQGIDIIDLNKTIKLLGEALNFIAHISFQG 500
           ++ D+ K  +H GH+    NP M PY+FG R  I II+L KT+ +  +AL+++ H++   
Sbjct: 5   SMRDMLKAGVHFGHQTRFWNPKMKPYIFGARNKIHIINLEKTVPMFNDALSYMQHVASNK 64

Query: 501 GIILFISRHLRVI*FVLSYKIFV*TIPLVEKVAEQCGQYSHCRRWLGGHLTQPDE*YGVI 680
           G ILF+                      V++ A  CGQY    RWLGG LT        I
Sbjct: 65  GKILFVGTKRA-------------AAEAVKEAAINCGQYYVNHRWLGGMLTNWKTVRQSI 111

Query: 681 TRLPD 695
            RL D
Sbjct: 112 KRLKD 116

>sp|P49668|RS2_PEDAC 30S ribosomal protein S2
          Length = 261

 Score = 73.6 bits (179), Expect = 7e-13
 Identities = 41/128 (32%), Positives = 66/128 (51%)
 Frame = +3

Query: 312 NLCTVEDLFKFRIHLGHKNTVRNPYMAPYLFGNRQGIDIIDLNKTIKLLGEALNFIAHIS 491
           ++ +++ L +  +H GH+    NP M P++F  R GI IIDL KT+KL+  A NF+  ++
Sbjct: 2   SVISMKQLLEAGVHFGHQTRRWNPKMKPFIFTERNGIYIIDLQKTVKLIDNAYNFVKDVA 61

Query: 492 FQGGIILFISRHLRVI*FVLSYKIFV*TIPLVEKVAEQCGQYSHCRRWLGGHLTQPDE*Y 671
              G++LF+    +                 +E+ A++ GQ+    RWLGG LT  +   
Sbjct: 62  ANDGVVLFVGTKKQ-------------AQTAIEEEAKRAGQFYVNHRWLGGTLTNWNTIQ 108

Query: 672 GVITRLPD 695
             I RL D
Sbjct: 109 KRIKRLKD 116

>sp|Q88VJ4|RS2_LACPL 30S ribosomal protein S2
          Length = 267

 Score = 73.2 bits (178), Expect = 9e-13
 Identities = 43/125 (34%), Positives = 62/125 (49%)
 Frame = +3

Query: 321 TVEDLFKFRIHLGHKNTVRNPYMAPYLFGNRQGIDIIDLNKTIKLLGEALNFIAHISFQG 500
           +++ L +  +H GH+    NP M PY+F  R GI IIDL KT+K++  A NF+   +   
Sbjct: 5   SMKQLLEAGVHFGHQTRRWNPKMKPYIFTERNGIYIIDLQKTVKMIDSAYNFVKDAAADD 64

Query: 501 GIILFISRHLRVI*FVLSYKIFV*TIPLVEKVAEQCGQYSHCRRWLGGHLTQPDE*YGVI 680
           G+ILF+    +                 +E+ A + GQY    RWLGG LT  +     I
Sbjct: 65  GVILFVGTKKQ-------------AQDSIEEEATRAGQYYVNHRWLGGTLTNWNTIQTRI 111

Query: 681 TRLPD 695
            RL D
Sbjct: 112 KRLKD 116

>sp|Q73HM1|RS2_WOLPM 30S ribosomal protein S2
          Length = 282

 Score = 72.8 bits (177), Expect = 1e-12
 Identities = 45/113 (39%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
 Frame = +3

Query: 321 TVEDLFKFRIHLGHKNTVRNPYMAPYLFGNRQG--IDIIDLNKTIKLLGEALNFIAHISF 494
           TV DL +  +H GHK +  N  MAPY++G  Q   I IIDL KT+ LL  A+  +  ++F
Sbjct: 8   TVRDLAESGVHFGHKISRWNAKMAPYIYGVHQENRIHIIDLRKTLPLLQVAMKALYDVAF 67

Query: 495 QGGIILFISRHLRVI*FVLSYKIFV*TIPLVEKVAEQCGQYSHCRRWLGGHLT 653
           QGG ILF+    +    + S  I             +CGQY    RWLGG LT
Sbjct: 68  QGGRILFVGTKFQAFDIIASEAI-------------RCGQYYVNHRWLGGMLT 107

>sp|Q92JF5|RS2_RICCN 30S ribosomal protein S2
          Length = 295

 Score = 72.4 bits (176), Expect = 1e-12
 Identities = 43/122 (35%), Positives = 61/122 (50%)
 Frame = +3

Query: 324 VEDLFKFRIHLGHKNTVRNPYMAPYLFGNRQGIDIIDLNKTIKLLGEALNFIAHISFQGG 503
           ++ L    +H GHK +  NP MA Y++G R  + IIDL +++ L+  ALN I     + G
Sbjct: 9   IKALLDAGVHFGHKTSRWNPKMASYIYGERDDVHIIDLRQSVALMSVALNAIYETVKKDG 68

Query: 504 IILFISRHLRVI*FVLSYKIFV*TIPLVEKVAEQCGQYSHCRRWLGGHLTQPDE*YGVIT 683
            ILF+S  ++    +  Y             AE+CGQY    RWLGG LT      G I 
Sbjct: 69  KILFVSTKIQASDIIAEY-------------AEKCGQYYVNHRWLGGMLTNWKTIAGSIE 115

Query: 684 RL 689
           +L
Sbjct: 116 KL 117

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,825,441
Number of Sequences: 369166
Number of extensions: 1783759
Number of successful extensions: 3837
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3701
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8197207050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00416

  1. Dr_sW_011_C19
  2. Dr_sW_005_L21