Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_005_L21
(838 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q924T2|RT02_MOUSE Mitochondrial 28S ribosomal protein S2... 140 6e-33
sp|Q9Y399|RT02_HUMAN Mitochondrial 28S ribosomal protein S2... 136 6e-32
sp|O67809|RS2_AQUAE 30S ribosomal protein S2 80 9e-15
sp|Q74IR7|RS2_LACJO 30S ribosomal protein S2 76 1e-13
sp|Q9CDR4|RS2_LACLA 30S ribosomal protein S2 76 1e-13
sp|Q5QXS0|RS2_IDILO 30S ribosomal protein S2 75 3e-13
sp|P49668|RS2_PEDAC 30S ribosomal protein S2 74 7e-13
sp|Q88VJ4|RS2_LACPL 30S ribosomal protein S2 73 8e-13
sp|Q73HM1|RS2_WOLPM 30S ribosomal protein S2 73 1e-12
sp|Q92JF5|RS2_RICCN 30S ribosomal protein S2 72 1e-12
>sp|Q924T2|RT02_MOUSE Mitochondrial 28S ribosomal protein S2 (S2mt) (MRP-S2)
Length = 291
Score = 140 bits (352), Expect = 6e-33
Identities = 71/163 (43%), Positives = 105/163 (64%)
Frame = +2
Query: 278 PLSTYDYFGVRNLCTVEDLFKFRIHLGHKNTVRNPYMAPYLFGNRQGIDIIDLNKTIKLL 457
PL D+F V+ L +V+ LF+ R+HLGHK R+ +M PY+FGNR G DIIDL++T L
Sbjct: 63 PLQHSDFFNVKELFSVKSLFEARVHLGHKAGCRHRFMEPYIFGNRLGQDIIDLDQTALNL 122
Query: 458 GEALNFIAHISFQGGIILFISRHLRVI*FVLSYKIFV*TIPLVEKVAEQCGQYSHCRRWL 637
ALNF AH++++ GIILF+SR+ + L+E A+ CG+Y+H R +
Sbjct: 123 QLALNFTAHVAYRKGIILFVSRNRQF-------------SHLIETTAQACGEYAHTRYFK 169
Query: 638 GGHLTQPDE*YGVITRLPDCVVFVHSLDSVFLPHVAITESANV 766
GG LT +G RLPD ++F+H+L++VF PHVA+ ++A +
Sbjct: 170 GGLLTNAQLLFGPSVRLPDLIIFLHTLNNVFEPHVAVRDAAKM 212
Score = 32.0 bits (71), Expect = 2.2
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = +3
Query: 693 IVLYLFTVLIQFSYHMLRLLSLQMC*IPTVGVVDTNCDP 809
++++L T+ F H+ + +M IPTVG+VDTNC+P
Sbjct: 189 LIIFLHTLNNVFEPHVAVRDAAKMN-IPTVGIVDTNCNP 226
>sp|Q9Y399|RT02_HUMAN Mitochondrial 28S ribosomal protein S2 (S2mt) (MRP-S2)
Length = 296
Score = 136 bits (343), Expect = 6e-32
Identities = 71/164 (43%), Positives = 104/164 (63%)
Frame = +2
Query: 275 DPLSTYDYFGVRNLCTVEDLFKFRIHLGHKNTVRNPYMAPYLFGNRQGIDIIDLNKTIKL 454
+PL D+F V+ L +V LF R+HLGHK R+ +M PY+FG+R DIIDL +T
Sbjct: 65 EPLKHSDFFNVKELFSVRSLFDARVHLGHKAGCRHRFMEPYIFGSRLDHDIIDLEQTATH 124
Query: 455 LGEALNFIAHISFQGGIILFISRHLRVI*FVLSYKIFV*TIPLVEKVAEQCGQYSHCRRW 634
L ALNF AH++++ GIILFISR+ + SY L+E +A CG+Y+H R +
Sbjct: 125 LQLALNFTAHMAYRKGIILFISRNRQ-----FSY--------LIENMARDCGEYAHTRYF 171
Query: 635 LGGHLTQPDE*YGVITRLPDCVVFVHSLDSVFLPHVAITESANV 766
GG LT +G RLPD ++F+H+L+++F PHVA+ ++A +
Sbjct: 172 RGGMLTNARLLFGPTVRLPDLIIFLHTLNNIFEPHVAVRDAAKM 215
Score = 31.6 bits (70), Expect = 2.8
Identities = 16/39 (41%), Positives = 26/39 (66%)
Frame = +3
Query: 693 IVLYLFTVLIQFSYHMLRLLSLQMC*IPTVGVVDTNCDP 809
++++L T+ F H+ + +M IPTVG+VDTNC+P
Sbjct: 192 LIIFLHTLNNIFEPHVAVRDAAKMN-IPTVGIVDTNCNP 229
>sp|O67809|RS2_AQUAE 30S ribosomal protein S2
Length = 274
Score = 79.7 bits (195), Expect = 9e-15
Identities = 41/111 (36%), Positives = 65/111 (58%)
Frame = +2
Query: 320 TVEDLFKFRIHLGHKNTVRNPYMAPYLFGNRQGIDIIDLNKTIKLLGEALNFIAHISFQG 499
++++L + +H GH + NP MAPY++G R GI IIDLNKTI +L +A +F++ + QG
Sbjct: 5 SMKELLEAGVHFGHSKSRWNPKMAPYIYGVRHGIHIIDLNKTIVMLEDAYHFVSDVIAQG 64
Query: 500 GIILFISRHLRVI*FVLSYKIFV*TIPLVEKVAEQCGQYSHCRRWLGGHLT 652
G ILF+ + ++++ AE+CG + RW+GG LT
Sbjct: 65 GEILFVGTKKQ-------------AKDIIKEEAERCGAFYVNERWVGGLLT 102
>sp|Q74IR7|RS2_LACJO 30S ribosomal protein S2
Length = 261
Score = 75.9 bits (185), Expect = 1e-13
Identities = 41/111 (36%), Positives = 61/111 (54%)
Frame = +2
Query: 320 TVEDLFKFRIHLGHKNTVRNPYMAPYLFGNRQGIDIIDLNKTIKLLGEALNFIAHISFQG 499
T++ L + +H GH+ +P MAPY+F R GI IIDL KTIK+L +A N++ ++ G
Sbjct: 5 TMKQLLEAGVHFGHQTRRWDPKMAPYIFTQRNGIYIIDLQKTIKMLDDAYNYVKAVAQDG 64
Query: 500 GIILFISRHLRVI*FVLSYKIFV*TIPLVEKVAEQCGQYSHCRRWLGGHLT 652
G+ LF+ + V++ A + GQY +RWLGG LT
Sbjct: 65 GVFLFVGTKKQ-------------AQDAVKEEATRAGQYYVNQRWLGGTLT 102
>sp|Q9CDR4|RS2_LACLA 30S ribosomal protein S2
Length = 255
Score = 75.9 bits (185), Expect = 1e-13
Identities = 41/128 (32%), Positives = 68/128 (53%)
Frame = +2
Query: 311 NLCTVEDLFKFRIHLGHKNTVRNPYMAPYLFGNRQGIDIIDLNKTIKLLGEALNFIAHIS 490
++ +++ L + +H GH+ NP M PY+F R GI +IDL KT+KL+ +A N++ + S
Sbjct: 2 SVISMKQLLEAGVHFGHQTRRWNPKMKPYIFTERNGIHVIDLQKTVKLVDDAYNYVKNAS 61
Query: 491 FQGGIILFISRHLRVI*FVLSYKIFV*TIPLVEKVAEQCGQYSHCRRWLGGHLTQPDE*Y 670
+G ++LF+ + V++ A + GQY RWLGG LT +
Sbjct: 62 QEGAVVLFVGTKKQ-------------AAEAVKEEALRAGQYYVNHRWLGGMLTNWNTIQ 108
Query: 671 GVITRLPD 694
+TRL +
Sbjct: 109 TRVTRLKE 116
>sp|Q5QXS0|RS2_IDILO 30S ribosomal protein S2
Length = 242
Score = 74.7 bits (182), Expect = 3e-13
Identities = 43/125 (34%), Positives = 61/125 (48%)
Frame = +2
Query: 320 TVEDLFKFRIHLGHKNTVRNPYMAPYLFGNRQGIDIIDLNKTIKLLGEALNFIAHISFQG 499
++ D+ K +H GH+ NP M PY+FG R I II+L KT+ + +AL+++ H++
Sbjct: 5 SMRDMLKAGVHFGHQTRFWNPKMKPYIFGARNKIHIINLEKTVPMFNDALSYMQHVASNK 64
Query: 500 GIILFISRHLRVI*FVLSYKIFV*TIPLVEKVAEQCGQYSHCRRWLGGHLTQPDE*YGVI 679
G ILF+ V++ A CGQY RWLGG LT I
Sbjct: 65 GKILFVGTKRA-------------AAEAVKEAAINCGQYYVNHRWLGGMLTNWKTVRQSI 111
Query: 680 TRLPD 694
RL D
Sbjct: 112 KRLKD 116
>sp|P49668|RS2_PEDAC 30S ribosomal protein S2
Length = 261
Score = 73.6 bits (179), Expect = 7e-13
Identities = 41/128 (32%), Positives = 66/128 (51%)
Frame = +2
Query: 311 NLCTVEDLFKFRIHLGHKNTVRNPYMAPYLFGNRQGIDIIDLNKTIKLLGEALNFIAHIS 490
++ +++ L + +H GH+ NP M P++F R GI IIDL KT+KL+ A NF+ ++
Sbjct: 2 SVISMKQLLEAGVHFGHQTRRWNPKMKPFIFTERNGIYIIDLQKTVKLIDNAYNFVKDVA 61
Query: 491 FQGGIILFISRHLRVI*FVLSYKIFV*TIPLVEKVAEQCGQYSHCRRWLGGHLTQPDE*Y 670
G++LF+ + +E+ A++ GQ+ RWLGG LT +
Sbjct: 62 ANDGVVLFVGTKKQ-------------AQTAIEEEAKRAGQFYVNHRWLGGTLTNWNTIQ 108
Query: 671 GVITRLPD 694
I RL D
Sbjct: 109 KRIKRLKD 116
>sp|Q88VJ4|RS2_LACPL 30S ribosomal protein S2
Length = 267
Score = 73.2 bits (178), Expect = 8e-13
Identities = 43/125 (34%), Positives = 62/125 (49%)
Frame = +2
Query: 320 TVEDLFKFRIHLGHKNTVRNPYMAPYLFGNRQGIDIIDLNKTIKLLGEALNFIAHISFQG 499
+++ L + +H GH+ NP M PY+F R GI IIDL KT+K++ A NF+ +
Sbjct: 5 SMKQLLEAGVHFGHQTRRWNPKMKPYIFTERNGIYIIDLQKTVKMIDSAYNFVKDAAADD 64
Query: 500 GIILFISRHLRVI*FVLSYKIFV*TIPLVEKVAEQCGQYSHCRRWLGGHLTQPDE*YGVI 679
G+ILF+ + +E+ A + GQY RWLGG LT + I
Sbjct: 65 GVILFVGTKKQ-------------AQDSIEEEATRAGQYYVNHRWLGGTLTNWNTIQTRI 111
Query: 680 TRLPD 694
RL D
Sbjct: 112 KRLKD 116
>sp|Q73HM1|RS2_WOLPM 30S ribosomal protein S2
Length = 282
Score = 72.8 bits (177), Expect = 1e-12
Identities = 45/113 (39%), Positives = 59/113 (52%), Gaps = 2/113 (1%)
Frame = +2
Query: 320 TVEDLFKFRIHLGHKNTVRNPYMAPYLFGNRQG--IDIIDLNKTIKLLGEALNFIAHISF 493
TV DL + +H GHK + N MAPY++G Q I IIDL KT+ LL A+ + ++F
Sbjct: 8 TVRDLAESGVHFGHKISRWNAKMAPYIYGVHQENRIHIIDLRKTLPLLQVAMKALYDVAF 67
Query: 494 QGGIILFISRHLRVI*FVLSYKIFV*TIPLVEKVAEQCGQYSHCRRWLGGHLT 652
QGG ILF+ + + S I +CGQY RWLGG LT
Sbjct: 68 QGGRILFVGTKFQAFDIIASEAI-------------RCGQYYVNHRWLGGMLT 107
>sp|Q92JF5|RS2_RICCN 30S ribosomal protein S2
Length = 295
Score = 72.4 bits (176), Expect = 1e-12
Identities = 43/122 (35%), Positives = 61/122 (50%)
Frame = +2
Query: 323 VEDLFKFRIHLGHKNTVRNPYMAPYLFGNRQGIDIIDLNKTIKLLGEALNFIAHISFQGG 502
++ L +H GHK + NP MA Y++G R + IIDL +++ L+ ALN I + G
Sbjct: 9 IKALLDAGVHFGHKTSRWNPKMASYIYGERDDVHIIDLRQSVALMSVALNAIYETVKKDG 68
Query: 503 IILFISRHLRVI*FVLSYKIFV*TIPLVEKVAEQCGQYSHCRRWLGGHLTQPDE*YGVIT 682
ILF+S ++ + Y AE+CGQY RWLGG LT G I
Sbjct: 69 KILFVSTKIQASDIIAEY-------------AEKCGQYYVNHRWLGGMLTNWKTIAGSIE 115
Query: 683 RL 688
+L
Sbjct: 116 KL 117
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,022,329
Number of Sequences: 369166
Number of extensions: 1805955
Number of successful extensions: 3875
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3739
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8148988185
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)