Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_C19
(597 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q924T2|RT02_MOUSE Mitochondrial 28S ribosomal protein S2... 111 2e-24
sp|Q9Y399|RT02_HUMAN Mitochondrial 28S ribosomal protein S2... 107 3e-23
sp|O67809|RS2_AQUAE 30S ribosomal protein S2 82 1e-15
sp|Q74IR7|RS2_LACJO 30S ribosomal protein S2 78 2e-14
sp|Q9CDR4|RS2_LACLA 30S ribosomal protein S2 77 4e-14
sp|P49668|RS2_PEDAC 30S ribosomal protein S2 76 7e-14
sp|Q5QXS0|RS2_IDILO 30S ribosomal protein S2 75 2e-13
sp|Q73HM1|RS2_WOLPM 30S ribosomal protein S2 74 2e-13
sp|Q88VJ4|RS2_LACPL 30S ribosomal protein S2 74 3e-13
sp|Q5NHY0|RS2_FRATT 30S ribosomal protein S2 73 6e-13
>sp|Q924T2|RT02_MOUSE Mitochondrial 28S ribosomal protein S2 (S2mt) (MRP-S2)
Length = 291
Score = 111 bits (277), Expect = 2e-24
Identities = 53/104 (50%), Positives = 74/104 (71%)
Frame = +2
Query: 278 PLSTYDYFGVRNLCTVEDLFKFRIHLGHKNTVRNPYMAPYLFGNRQGIDIIDLNKTIKLL 457
PL D+F V+ L +V+ LF+ R+HLGHK R+ +M PY+FGNR G DIIDL++T L
Sbjct: 63 PLQHSDFFNVKELFSVKSLFEARVHLGHKAGCRHRFMEPYIFGNRLGQDIIDLDQTALNL 122
Query: 458 GEALNFIAHISFQGGIILFISRHLQTIPLVEKVAKQCGQYSHCR 589
ALNF AH++++ GIILF+SR+ Q L+E A+ CG+Y+H R
Sbjct: 123 QLALNFTAHVAYRKGIILFVSRNRQFSHLIETTAQACGEYAHTR 166
>sp|Q9Y399|RT02_HUMAN Mitochondrial 28S ribosomal protein S2 (S2mt) (MRP-S2)
Length = 296
Score = 107 bits (266), Expect = 3e-23
Identities = 52/105 (49%), Positives = 72/105 (68%)
Frame = +2
Query: 275 DPLSTYDYFGVRNLCTVEDLFKFRIHLGHKNTVRNPYMAPYLFGNRQGIDIIDLNKTIKL 454
+PL D+F V+ L +V LF R+HLGHK R+ +M PY+FG+R DIIDL +T
Sbjct: 65 EPLKHSDFFNVKELFSVRSLFDARVHLGHKAGCRHRFMEPYIFGSRLDHDIIDLEQTATH 124
Query: 455 LGEALNFIAHISFQGGIILFISRHLQTIPLVEKVAKQCGQYSHCR 589
L ALNF AH++++ GIILFISR+ Q L+E +A+ CG+Y+H R
Sbjct: 125 LQLALNFTAHMAYRKGIILFISRNRQFSYLIENMARDCGEYAHTR 169
>sp|O67809|RS2_AQUAE 30S ribosomal protein S2
Length = 274
Score = 81.6 bits (200), Expect = 1e-15
Identities = 37/92 (40%), Positives = 60/92 (65%)
Frame = +2
Query: 320 TVEDLFKFRIHLGHKNTVRNPYMAPYLFGNRQGIDIIDLNKTIKLLGEALNFIAHISFQG 499
++++L + +H GH + NP MAPY++G R GI IIDLNKTI +L +A +F++ + QG
Sbjct: 5 SMKELLEAGVHFGHSKSRWNPKMAPYIYGVRHGIHIIDLNKTIVMLEDAYHFVSDVIAQG 64
Query: 500 GIILFISRHLQTIPLVEKVAKQCGQYSHCRRW 595
G ILF+ Q ++++ A++CG + RW
Sbjct: 65 GEILFVGTKKQAKDIIKEEAERCGAFYVNERW 96
>sp|Q74IR7|RS2_LACJO 30S ribosomal protein S2
Length = 261
Score = 77.8 bits (190), Expect = 2e-14
Identities = 37/92 (40%), Positives = 56/92 (60%)
Frame = +2
Query: 320 TVEDLFKFRIHLGHKNTVRNPYMAPYLFGNRQGIDIIDLNKTIKLLGEALNFIAHISFQG 499
T++ L + +H GH+ +P MAPY+F R GI IIDL KTIK+L +A N++ ++ G
Sbjct: 5 TMKQLLEAGVHFGHQTRRWDPKMAPYIFTQRNGIYIIDLQKTIKMLDDAYNYVKAVAQDG 64
Query: 500 GIILFISRHLQTIPLVEKVAKQCGQYSHCRRW 595
G+ LF+ Q V++ A + GQY +RW
Sbjct: 65 GVFLFVGTKKQAQDAVKEEATRAGQYYVNQRW 96
>sp|Q9CDR4|RS2_LACLA 30S ribosomal protein S2
Length = 255
Score = 76.6 bits (187), Expect = 4e-14
Identities = 34/95 (35%), Positives = 57/95 (60%)
Frame = +2
Query: 311 NLCTVEDLFKFRIHLGHKNTVRNPYMAPYLFGNRQGIDIIDLNKTIKLLGEALNFIAHIS 490
++ +++ L + +H GH+ NP M PY+F R GI +IDL KT+KL+ +A N++ + S
Sbjct: 2 SVISMKQLLEAGVHFGHQTRRWNPKMKPYIFTERNGIHVIDLQKTVKLVDDAYNYVKNAS 61
Query: 491 FQGGIILFISRHLQTIPLVEKVAKQCGQYSHCRRW 595
+G ++LF+ Q V++ A + GQY RW
Sbjct: 62 QEGAVVLFVGTKKQAAEAVKEEALRAGQYYVNHRW 96
>sp|P49668|RS2_PEDAC 30S ribosomal protein S2
Length = 261
Score = 75.9 bits (185), Expect = 7e-14
Identities = 34/95 (35%), Positives = 56/95 (58%)
Frame = +2
Query: 311 NLCTVEDLFKFRIHLGHKNTVRNPYMAPYLFGNRQGIDIIDLNKTIKLLGEALNFIAHIS 490
++ +++ L + +H GH+ NP M P++F R GI IIDL KT+KL+ A NF+ ++
Sbjct: 2 SVISMKQLLEAGVHFGHQTRRWNPKMKPFIFTERNGIYIIDLQKTVKLIDNAYNFVKDVA 61
Query: 491 FQGGIILFISRHLQTIPLVEKVAKQCGQYSHCRRW 595
G++LF+ Q +E+ AK+ GQ+ RW
Sbjct: 62 ANDGVVLFVGTKKQAQTAIEEEAKRAGQFYVNHRW 96
>sp|Q5QXS0|RS2_IDILO 30S ribosomal protein S2
Length = 242
Score = 74.7 bits (182), Expect = 2e-13
Identities = 34/92 (36%), Positives = 52/92 (56%)
Frame = +2
Query: 320 TVEDLFKFRIHLGHKNTVRNPYMAPYLFGNRQGIDIIDLNKTIKLLGEALNFIAHISFQG 499
++ D+ K +H GH+ NP M PY+FG R I II+L KT+ + +AL+++ H++
Sbjct: 5 SMRDMLKAGVHFGHQTRFWNPKMKPYIFGARNKIHIINLEKTVPMFNDALSYMQHVASNK 64
Query: 500 GIILFISRHLQTIPLVEKVAKQCGQYSHCRRW 595
G ILF+ V++ A CGQY RW
Sbjct: 65 GKILFVGTKRAAAEAVKEAAINCGQYYVNHRW 96
>sp|Q73HM1|RS2_WOLPM 30S ribosomal protein S2
Length = 282
Score = 74.3 bits (181), Expect = 2e-13
Identities = 40/94 (42%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Frame = +2
Query: 320 TVEDLFKFRIHLGHKNTVRNPYMAPYLFGNRQG--IDIIDLNKTIKLLGEALNFIAHISF 493
TV DL + +H GHK + N MAPY++G Q I IIDL KT+ LL A+ + ++F
Sbjct: 8 TVRDLAESGVHFGHKISRWNAKMAPYIYGVHQENRIHIIDLRKTLPLLQVAMKALYDVAF 67
Query: 494 QGGIILFISRHLQTIPLVEKVAKQCGQYSHCRRW 595
QGG ILF+ Q ++ A +CGQY RW
Sbjct: 68 QGGRILFVGTKFQAFDIIASEAIRCGQYYVNHRW 101
>sp|Q88VJ4|RS2_LACPL 30S ribosomal protein S2
Length = 267
Score = 73.9 bits (180), Expect = 3e-13
Identities = 35/92 (38%), Positives = 52/92 (56%)
Frame = +2
Query: 320 TVEDLFKFRIHLGHKNTVRNPYMAPYLFGNRQGIDIIDLNKTIKLLGEALNFIAHISFQG 499
+++ L + +H GH+ NP M PY+F R GI IIDL KT+K++ A NF+ +
Sbjct: 5 SMKQLLEAGVHFGHQTRRWNPKMKPYIFTERNGIYIIDLQKTVKMIDSAYNFVKDAAADD 64
Query: 500 GIILFISRHLQTIPLVEKVAKQCGQYSHCRRW 595
G+ILF+ Q +E+ A + GQY RW
Sbjct: 65 GVILFVGTKKQAQDSIEEEATRAGQYYVNHRW 96
>sp|Q5NHY0|RS2_FRATT 30S ribosomal protein S2
Length = 239
Score = 72.8 bits (177), Expect = 6e-13
Identities = 34/91 (37%), Positives = 49/91 (53%)
Frame = +2
Query: 323 VEDLFKFRIHLGHKNTVRNPYMAPYLFGNRQGIDIIDLNKTIKLLGEALNFIAHISFQGG 502
++++ +H GHK NP M Y+FG G+ II+L KT+ L +A+NF+ GG
Sbjct: 4 MKEMLSVGVHFGHKKAFWNPQMKEYIFGINHGVHIINLEKTVPLFQDAVNFVGKTVANGG 63
Query: 503 IILFISRHLQTIPLVEKVAKQCGQYSHCRRW 595
ILF+ Q +VE AK+CG RW
Sbjct: 64 KILFVGTKRQAQDIVEAEAKRCGMSFVSHRW 94
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,515,050
Number of Sequences: 369166
Number of extensions: 1085022
Number of successful extensions: 2358
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2357
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4553075865
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)