Planaria EST Database

DrC_00415

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00415
         (1064 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P35134|UBCB_ARATH  Ubiquitin-conjugating enzyme E2-17 kDa...   110   5e-24
sp|P35129|UBC2_CAEEL  Ubiquitin-conjugating enzyme E2 2 (Ubi...   110   9e-24
sp|O74196|UBC1_COLGL  Ubiquitin-conjugating enzyme E2-16 kDa...   110   9e-24
sp|P61080|UB2D1_MOUSE  Ubiquitin-conjugating enzyme E2 D1 (U...   109   2e-23
sp|Q9UVR2|UBC1_MAGGR  Ubiquitin-conjugating enzyme E2-16 kDa...   109   2e-23
sp|P70711|UB2D4_RAT  Ubiquitin-conjugating enzyme E2 D4 (Ubi...   108   2e-23
sp|P25867|UBCD1_DROME  Ubiquitin-conjugating enzyme E2-17 kD...   108   3e-23
sp|P35131|UBC8_ARATH  Ubiquitin-conjugating enzyme E2-17 kDa...   107   8e-23
sp|P35135|UBC4_LYCES  Ubiquitin-conjugating enzyme E2-17 kDa...   107   8e-23
sp|P46595|UBC4_SCHPO  Ubiquitin-conjugating enzyme E2 4 (Ubi...   106   1e-22

>sp|P35134|UBCB_ARATH Ubiquitin-conjugating enzyme E2-17 kDa 11 (Ubiquitin-protein ligase
           11) (Ubiquitin carrier protein 11)
          Length = 148

 Score =  110 bits (276), Expect = 5e-24
 Identities = 56/146 (38%), Positives = 81/146 (55%)
 Frame = +3

Query: 297 SRRLQMESDILSKEQPYGISARCLDLKTLSSWMASIVGPPGSEYEGGLFYLLIKVPSSYP 476
           S+R+  E   L K+ P   SA  +  + +  W A+I+GPP S Y GG+F + I  P  YP
Sbjct: 3   SKRILKELKDLQKDPPSNCSAGPV-AEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYP 61

Query: 477 MRPPSVQFLTRIYHPNISKHGEIGIDLLHNNWSLAXXXXXXXXXXXXXXTDPNGRICMEP 656
            +PP V F T++YHPNI+ +G I +D+L   WS A              TDPN    + P
Sbjct: 62  FKPPKVSFKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121

Query: 657 EIGEMYNKNPAEFKKTSRLWTWKFAM 734
           EI  MY  + ++++ T+R WT K+AM
Sbjct: 122 EIAHMYKTDRSKYESTARSWTQKYAM 147

>sp|P35129|UBC2_CAEEL Ubiquitin-conjugating enzyme E2 2 (Ubiquitin-protein ligase 2)
           (Ubiquitin carrier protein 2)
          Length = 147

 Score =  110 bits (274), Expect = 9e-24
 Identities = 56/145 (38%), Positives = 80/145 (55%)
 Frame = +3

Query: 300 RRLQMESDILSKEQPYGISARCLDLKTLSSWMASIVGPPGSEYEGGLFYLLIKVPSSYPM 479
           +R+Q E   L ++ P   SA  +    L  W A+I+GPP S Y+GG+F+L I  P+ YP 
Sbjct: 4   KRIQKELQDLGRDPPAQCSAGPVG-DDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPF 62

Query: 480 RPPSVQFLTRIYHPNISKHGEIGIDLLHNNWSLAXXXXXXXXXXXXXXTDPNGRICMEPE 659
           +PP V F TRIYHPNI+ +G I +D+L + WS A               DPN    + PE
Sbjct: 63  KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 122

Query: 660 IGEMYNKNPAEFKKTSRLWTWKFAM 734
           I  +Y  +   + + +R WT K+AM
Sbjct: 123 IARIYKTDRERYNQLAREWTQKYAM 147

>sp|O74196|UBC1_COLGL Ubiquitin-conjugating enzyme E2-16 kDa (Ubiquitin-protein ligase)
           (Ubiquitin carrier protein) (Colletotrichum
           hard-surface-induced protein 1)
          Length = 147

 Score =  110 bits (274), Expect = 9e-24
 Identities = 56/145 (38%), Positives = 81/145 (55%)
 Frame = +3

Query: 300 RRLQMESDILSKEQPYGISARCLDLKTLSSWMASIVGPPGSEYEGGLFYLLIKVPSSYPM 479
           +R+  E   L ++ P   SA  +  + L  W A+I+GP  S Y GG+F+L I  P+ YP 
Sbjct: 4   KRINKELTDLGRDPPSSCSAGPVG-EDLFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPF 62

Query: 480 RPPSVQFLTRIYHPNISKHGEIGIDLLHNNWSLAXXXXXXXXXXXXXXTDPNGRICMEPE 659
           +PP V F TRIYHPNI+ +G I +D+L + WS A              TDPN    + PE
Sbjct: 63  KPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEPLVPE 122

Query: 660 IGEMYNKNPAEFKKTSRLWTWKFAM 734
           I  +Y  + A ++ T+R WT K+A+
Sbjct: 123 IAHVYKTDRARYEATAREWTRKYAI 147

>sp|P61080|UB2D1_MOUSE Ubiquitin-conjugating enzyme E2 D1 (Ubiquitin-protein ligase D1)
           (Ubiquitin carrier protein D1) (Ubiquitin-conjugating
           enzyme E2-17 kDa 1) (E2(17)KB 1)
 sp|P51668|UB2D1_HUMAN Ubiquitin-conjugating enzyme E2 D1 (Ubiquitin-protein ligase D1)
           (Ubiquitin carrier protein D1) (UbcH5)
           (Ubiquitin-conjugating enzyme E2-17 kDa 1) (E2(17)KB 1)
          Length = 147

 Score =  109 bits (272), Expect = 2e-23
 Identities = 52/145 (35%), Positives = 82/145 (56%)
 Frame = +3

Query: 300 RRLQMESDILSKEQPYGISARCLDLKTLSSWMASIVGPPGSEYEGGLFYLLIKVPSSYPM 479
           +R+Q E   L ++ P   SA  +    L  W A+I+GPP S Y+GG+F+L +  P+ YP 
Sbjct: 4   KRIQKELSDLQRDPPAHCSAGPVG-DDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 62

Query: 480 RPPSVQFLTRIYHPNISKHGEIGIDLLHNNWSLAXXXXXXXXXXXXXXTDPNGRICMEPE 659
           +PP + F T+IYHPNI+ +G I +D+L + WS A               DPN    + P+
Sbjct: 63  KPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPD 122

Query: 660 IGEMYNKNPAEFKKTSRLWTWKFAM 734
           I ++Y  +  ++ + +R WT K+AM
Sbjct: 123 IAQIYKSDKEKYNRHAREWTQKYAM 147

>sp|Q9UVR2|UBC1_MAGGR Ubiquitin-conjugating enzyme E2-16 kDa (Ubiquitin-protein ligase)
           (Ubiquitin carrier protein)
          Length = 147

 Score =  109 bits (272), Expect = 2e-23
 Identities = 56/145 (38%), Positives = 81/145 (55%)
 Frame = +3

Query: 300 RRLQMESDILSKEQPYGISARCLDLKTLSSWMASIVGPPGSEYEGGLFYLLIKVPSSYPM 479
           +R+  E   L ++ P   SA  +  + L  W A+I+GP  S Y GG+F+L I  P+ YP 
Sbjct: 4   KRINKELTDLGRDPPSSCSAGPVG-EDLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPF 62

Query: 480 RPPSVQFLTRIYHPNISKHGEIGIDLLHNNWSLAXXXXXXXXXXXXXXTDPNGRICMEPE 659
           +PP V F TRIYHPNI+ +G I +D+L + WS A              TDPN    + PE
Sbjct: 63  KPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDDPLVPE 122

Query: 660 IGEMYNKNPAEFKKTSRLWTWKFAM 734
           I  +Y    A+++ T+R WT K+A+
Sbjct: 123 IAHVYRTARAQYEATAREWTPKYAI 147

>sp|P70711|UB2D4_RAT Ubiquitin-conjugating enzyme E2 D4 (Ubiquitin-protein ligase D4)
           (Ubiquitin carrier protein D4) (Ubiquitin-conjugating
           enzyme E2-17 kDa 4) (E2(17)KB 4)
          Length = 147

 Score =  108 bits (271), Expect = 2e-23
 Identities = 53/145 (36%), Positives = 84/145 (57%)
 Frame = +3

Query: 300 RRLQMESDILSKEQPYGISARCLDLKTLSSWMASIVGPPGSEYEGGLFYLLIKVPSSYPM 479
           +R+  E + L+++ P   SA  +  + +  W A+I+GP  S Y+GG F+L I  P+ YP 
Sbjct: 4   KRIHKELNDLAQDPPAQCSAGPVG-EDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPF 62

Query: 480 RPPSVQFLTRIYHPNISKHGEIGIDLLHNNWSLAXXXXXXXXXXXXXXTDPNGRICMEPE 659
           +PP V+F TRIYHPN++ +G I +D+L + WS A               DPN    + PE
Sbjct: 63  KPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPE 122

Query: 660 IGEMYNKNPAEFKKTSRLWTWKFAM 734
           I ++Y  +  ++ +T+R WT K+AM
Sbjct: 123 IAQIYKTDRDKYNRTAREWTQKYAM 147

>sp|P25867|UBCD1_DROME Ubiquitin-conjugating enzyme E2-17 kDa (Ubiquitin-protein ligase)
           (Ubiquitin carrier protein) (Effete protein)
          Length = 147

 Score =  108 bits (270), Expect = 3e-23
 Identities = 55/145 (37%), Positives = 80/145 (55%)
 Frame = +3

Query: 300 RRLQMESDILSKEQPYGISARCLDLKTLSSWMASIVGPPGSEYEGGLFYLLIKVPSSYPM 479
           +R+  E   L ++ P   SA  +    L  W A+I+GPP S Y+GG+F+L I  P+ YP 
Sbjct: 4   KRINKELQDLGRDPPAQCSAGPVG-DDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPF 62

Query: 480 RPPSVQFLTRIYHPNISKHGEIGIDLLHNNWSLAXXXXXXXXXXXXXXTDPNGRICMEPE 659
           +PP V F TRIYHPNI+ +G I +D+L + WS A               DPN    + PE
Sbjct: 63  KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 122

Query: 660 IGEMYNKNPAEFKKTSRLWTWKFAM 734
           I  +Y  +  ++ + +R WT K+AM
Sbjct: 123 IARIYKTDREKYNELAREWTRKYAM 147

>sp|P35131|UBC8_ARATH Ubiquitin-conjugating enzyme E2-17 kDa 8 (Ubiquitin-protein ligase
           8) (Ubiquitin carrier protein 8) (UBCAT4A)
          Length = 148

 Score =  107 bits (266), Expect = 8e-23
 Identities = 55/146 (37%), Positives = 80/146 (54%)
 Frame = +3

Query: 297 SRRLQMESDILSKEQPYGISARCLDLKTLSSWMASIVGPPGSEYEGGLFYLLIKVPSSYP 476
           S+R+  E   L K+ P   SA  +  + +  W A+I+GP  S Y GG+F + I  P  YP
Sbjct: 3   SKRILKELKDLQKDPPTSCSAGPV-AEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYP 61

Query: 477 MRPPSVQFLTRIYHPNISKHGEIGIDLLHNNWSLAXXXXXXXXXXXXXXTDPNGRICMEP 656
            +PP V F T+++HPNI+ +G I +D+L   WS A              TDPN    + P
Sbjct: 62  FKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121

Query: 657 EIGEMYNKNPAEFKKTSRLWTWKFAM 734
           EI  MY  + A+++ T+R WT K+AM
Sbjct: 122 EIAHMYKTDRAKYEATARNWTQKYAM 147

>sp|P35135|UBC4_LYCES Ubiquitin-conjugating enzyme E2-17 kDa (Ubiquitin-protein ligase)
           (Ubiquitin carrier protein)
          Length = 148

 Score =  107 bits (266), Expect = 8e-23
 Identities = 55/146 (37%), Positives = 80/146 (54%)
 Frame = +3

Query: 297 SRRLQMESDILSKEQPYGISARCLDLKTLSSWMASIVGPPGSEYEGGLFYLLIKVPSSYP 476
           S+R+  E   L K+ P   SA  +  + +  W A+I+GP  S Y GG+F + I  P  YP
Sbjct: 3   SKRILKELKDLQKDPPTSCSAGPV-AEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYP 61

Query: 477 MRPPSVQFLTRIYHPNISKHGEIGIDLLHNNWSLAXXXXXXXXXXXXXXTDPNGRICMEP 656
            +PP V F T+++HPNI+ +G I +D+L   WS A              TDPN    + P
Sbjct: 62  FKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121

Query: 657 EIGEMYNKNPAEFKKTSRLWTWKFAM 734
           EI  MY  + A+++ T+R WT K+AM
Sbjct: 122 EIAHMYKTDRAKYETTARSWTQKYAM 147

>sp|P46595|UBC4_SCHPO Ubiquitin-conjugating enzyme E2 4 (Ubiquitin-protein ligase 4)
           (Ubiquitin carrier protein 4)
          Length = 147

 Score =  106 bits (265), Expect = 1e-22
 Identities = 55/145 (37%), Positives = 80/145 (55%)
 Frame = +3

Query: 300 RRLQMESDILSKEQPYGISARCLDLKTLSSWMASIVGPPGSEYEGGLFYLLIKVPSSYPM 479
           +R+  E   L K+ P   SA  +    L  W A+I+GP  S Y GG+F+L I  P+ YP 
Sbjct: 4   KRINRELADLGKDPPSSCSAGPVG-DDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPF 62

Query: 480 RPPSVQFLTRIYHPNISKHGEIGIDLLHNNWSLAXXXXXXXXXXXXXXTDPNGRICMEPE 659
           +PP V F TRIYHPNI+ +G I +D+L + WS A              TDPN    + PE
Sbjct: 63  KPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPE 122

Query: 660 IGEMYNKNPAEFKKTSRLWTWKFAM 734
           I  +Y  + + ++ ++R WT K+A+
Sbjct: 123 IAHVYKTDRSRYELSAREWTRKYAI 147

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,564,468
Number of Sequences: 369166
Number of extensions: 2591340
Number of successful extensions: 8190
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8124
length of database: 68,354,980
effective HSP length: 112
effective length of database: 47,664,660
effective search space used: 11534847720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00415

  1. Dr_sW_011_C18
  2. Dr_sW_011_F11