Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_C18
(876 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P35134|UBCB_ARATH Ubiquitin-conjugating enzyme E2-17 kDa... 110 4e-24
sp|P35129|UBC2_CAEEL Ubiquitin-conjugating enzyme E2 2 (Ubi... 110 7e-24
sp|O74196|UBC1_COLGL Ubiquitin-conjugating enzyme E2-16 kDa... 110 7e-24
sp|P61080|UB2D1_MOUSE Ubiquitin-conjugating enzyme E2 D1 (U... 109 1e-23
sp|Q9UVR2|UBC1_MAGGR Ubiquitin-conjugating enzyme E2-16 kDa... 109 1e-23
sp|P70711|UB2D4_RAT Ubiquitin-conjugating enzyme E2 D4 (Ubi... 108 1e-23
sp|P25867|UBCD1_DROME Ubiquitin-conjugating enzyme E2-17 kD... 108 2e-23
sp|P35131|UBC8_ARATH Ubiquitin-conjugating enzyme E2-17 kDa... 107 6e-23
sp|P35135|UBC4_LYCES Ubiquitin-conjugating enzyme E2-17 kDa... 107 6e-23
sp|P46595|UBC4_SCHPO Ubiquitin-conjugating enzyme E2 4 (Ubi... 106 7e-23
>sp|P35134|UBCB_ARATH Ubiquitin-conjugating enzyme E2-17 kDa 11 (Ubiquitin-protein ligase
11) (Ubiquitin carrier protein 11)
Length = 148
Score = 110 bits (276), Expect = 4e-24
Identities = 56/146 (38%), Positives = 81/146 (55%)
Frame = +3
Query: 297 SRRLQMESDILSKEQPYGISARCLDLKTLSSWMASIVGPPGSEYEGGLFYLLIKVPSSYP 476
S+R+ E L K+ P SA + + + W A+I+GPP S Y GG+F + I P YP
Sbjct: 3 SKRILKELKDLQKDPPSNCSAGPV-AEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYP 61
Query: 477 MRPPSVQFLTRIYHPNISKHGEIGIDLLHNNWSLAXXXXXXXXXXXXXXTDPNGRICMEP 656
+PP V F T++YHPNI+ +G I +D+L WS A TDPN + P
Sbjct: 62 FKPPKVSFKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121
Query: 657 EIGEMYNKNPAEFKKTSRLWTWKFAM 734
EI MY + ++++ T+R WT K+AM
Sbjct: 122 EIAHMYKTDRSKYESTARSWTQKYAM 147
>sp|P35129|UBC2_CAEEL Ubiquitin-conjugating enzyme E2 2 (Ubiquitin-protein ligase 2)
(Ubiquitin carrier protein 2)
Length = 147
Score = 110 bits (274), Expect = 7e-24
Identities = 56/145 (38%), Positives = 80/145 (55%)
Frame = +3
Query: 300 RRLQMESDILSKEQPYGISARCLDLKTLSSWMASIVGPPGSEYEGGLFYLLIKVPSSYPM 479
+R+Q E L ++ P SA + L W A+I+GPP S Y+GG+F+L I P+ YP
Sbjct: 4 KRIQKELQDLGRDPPAQCSAGPVG-DDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPF 62
Query: 480 RPPSVQFLTRIYHPNISKHGEIGIDLLHNNWSLAXXXXXXXXXXXXXXTDPNGRICMEPE 659
+PP V F TRIYHPNI+ +G I +D+L + WS A DPN + PE
Sbjct: 63 KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 122
Query: 660 IGEMYNKNPAEFKKTSRLWTWKFAM 734
I +Y + + + +R WT K+AM
Sbjct: 123 IARIYKTDRERYNQLAREWTQKYAM 147
>sp|O74196|UBC1_COLGL Ubiquitin-conjugating enzyme E2-16 kDa (Ubiquitin-protein ligase)
(Ubiquitin carrier protein) (Colletotrichum
hard-surface-induced protein 1)
Length = 147
Score = 110 bits (274), Expect = 7e-24
Identities = 56/145 (38%), Positives = 81/145 (55%)
Frame = +3
Query: 300 RRLQMESDILSKEQPYGISARCLDLKTLSSWMASIVGPPGSEYEGGLFYLLIKVPSSYPM 479
+R+ E L ++ P SA + + L W A+I+GP S Y GG+F+L I P+ YP
Sbjct: 4 KRINKELTDLGRDPPSSCSAGPVG-EDLFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPF 62
Query: 480 RPPSVQFLTRIYHPNISKHGEIGIDLLHNNWSLAXXXXXXXXXXXXXXTDPNGRICMEPE 659
+PP V F TRIYHPNI+ +G I +D+L + WS A TDPN + PE
Sbjct: 63 KPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEPLVPE 122
Query: 660 IGEMYNKNPAEFKKTSRLWTWKFAM 734
I +Y + A ++ T+R WT K+A+
Sbjct: 123 IAHVYKTDRARYEATAREWTRKYAI 147
>sp|P61080|UB2D1_MOUSE Ubiquitin-conjugating enzyme E2 D1 (Ubiquitin-protein ligase D1)
(Ubiquitin carrier protein D1) (Ubiquitin-conjugating
enzyme E2-17 kDa 1) (E2(17)KB 1)
sp|P51668|UB2D1_HUMAN Ubiquitin-conjugating enzyme E2 D1 (Ubiquitin-protein ligase D1)
(Ubiquitin carrier protein D1) (UbcH5)
(Ubiquitin-conjugating enzyme E2-17 kDa 1) (E2(17)KB 1)
Length = 147
Score = 109 bits (272), Expect = 1e-23
Identities = 52/145 (35%), Positives = 82/145 (56%)
Frame = +3
Query: 300 RRLQMESDILSKEQPYGISARCLDLKTLSSWMASIVGPPGSEYEGGLFYLLIKVPSSYPM 479
+R+Q E L ++ P SA + L W A+I+GPP S Y+GG+F+L + P+ YP
Sbjct: 4 KRIQKELSDLQRDPPAHCSAGPVG-DDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPF 62
Query: 480 RPPSVQFLTRIYHPNISKHGEIGIDLLHNNWSLAXXXXXXXXXXXXXXTDPNGRICMEPE 659
+PP + F T+IYHPNI+ +G I +D+L + WS A DPN + P+
Sbjct: 63 KPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPD 122
Query: 660 IGEMYNKNPAEFKKTSRLWTWKFAM 734
I ++Y + ++ + +R WT K+AM
Sbjct: 123 IAQIYKSDKEKYNRHAREWTQKYAM 147
>sp|Q9UVR2|UBC1_MAGGR Ubiquitin-conjugating enzyme E2-16 kDa (Ubiquitin-protein ligase)
(Ubiquitin carrier protein)
Length = 147
Score = 109 bits (272), Expect = 1e-23
Identities = 56/145 (38%), Positives = 81/145 (55%)
Frame = +3
Query: 300 RRLQMESDILSKEQPYGISARCLDLKTLSSWMASIVGPPGSEYEGGLFYLLIKVPSSYPM 479
+R+ E L ++ P SA + + L W A+I+GP S Y GG+F+L I P+ YP
Sbjct: 4 KRINKELTDLGRDPPSSCSAGPVG-EDLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPF 62
Query: 480 RPPSVQFLTRIYHPNISKHGEIGIDLLHNNWSLAXXXXXXXXXXXXXXTDPNGRICMEPE 659
+PP V F TRIYHPNI+ +G I +D+L + WS A TDPN + PE
Sbjct: 63 KPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDDPLVPE 122
Query: 660 IGEMYNKNPAEFKKTSRLWTWKFAM 734
I +Y A+++ T+R WT K+A+
Sbjct: 123 IAHVYRTARAQYEATAREWTPKYAI 147
>sp|P70711|UB2D4_RAT Ubiquitin-conjugating enzyme E2 D4 (Ubiquitin-protein ligase D4)
(Ubiquitin carrier protein D4) (Ubiquitin-conjugating
enzyme E2-17 kDa 4) (E2(17)KB 4)
Length = 147
Score = 108 bits (271), Expect = 1e-23
Identities = 53/145 (36%), Positives = 84/145 (57%)
Frame = +3
Query: 300 RRLQMESDILSKEQPYGISARCLDLKTLSSWMASIVGPPGSEYEGGLFYLLIKVPSSYPM 479
+R+ E + L+++ P SA + + + W A+I+GP S Y+GG F+L I P+ YP
Sbjct: 4 KRIHKELNDLAQDPPAQCSAGPVG-EDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPF 62
Query: 480 RPPSVQFLTRIYHPNISKHGEIGIDLLHNNWSLAXXXXXXXXXXXXXXTDPNGRICMEPE 659
+PP V+F TRIYHPN++ +G I +D+L + WS A DPN + PE
Sbjct: 63 KPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPE 122
Query: 660 IGEMYNKNPAEFKKTSRLWTWKFAM 734
I ++Y + ++ +T+R WT K+AM
Sbjct: 123 IAQIYKTDRDKYNRTAREWTQKYAM 147
>sp|P25867|UBCD1_DROME Ubiquitin-conjugating enzyme E2-17 kDa (Ubiquitin-protein ligase)
(Ubiquitin carrier protein) (Effete protein)
Length = 147
Score = 108 bits (270), Expect = 2e-23
Identities = 55/145 (37%), Positives = 80/145 (55%)
Frame = +3
Query: 300 RRLQMESDILSKEQPYGISARCLDLKTLSSWMASIVGPPGSEYEGGLFYLLIKVPSSYPM 479
+R+ E L ++ P SA + L W A+I+GPP S Y+GG+F+L I P+ YP
Sbjct: 4 KRINKELQDLGRDPPAQCSAGPVG-DDLFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPF 62
Query: 480 RPPSVQFLTRIYHPNISKHGEIGIDLLHNNWSLAXXXXXXXXXXXXXXTDPNGRICMEPE 659
+PP V F TRIYHPNI+ +G I +D+L + WS A DPN + PE
Sbjct: 63 KPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPE 122
Query: 660 IGEMYNKNPAEFKKTSRLWTWKFAM 734
I +Y + ++ + +R WT K+AM
Sbjct: 123 IARIYKTDREKYNELAREWTRKYAM 147
>sp|P35131|UBC8_ARATH Ubiquitin-conjugating enzyme E2-17 kDa 8 (Ubiquitin-protein ligase
8) (Ubiquitin carrier protein 8) (UBCAT4A)
Length = 148
Score = 107 bits (266), Expect = 6e-23
Identities = 55/146 (37%), Positives = 80/146 (54%)
Frame = +3
Query: 297 SRRLQMESDILSKEQPYGISARCLDLKTLSSWMASIVGPPGSEYEGGLFYLLIKVPSSYP 476
S+R+ E L K+ P SA + + + W A+I+GP S Y GG+F + I P YP
Sbjct: 3 SKRILKELKDLQKDPPTSCSAGPV-AEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYP 61
Query: 477 MRPPSVQFLTRIYHPNISKHGEIGIDLLHNNWSLAXXXXXXXXXXXXXXTDPNGRICMEP 656
+PP V F T+++HPNI+ +G I +D+L WS A TDPN + P
Sbjct: 62 FKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121
Query: 657 EIGEMYNKNPAEFKKTSRLWTWKFAM 734
EI MY + A+++ T+R WT K+AM
Sbjct: 122 EIAHMYKTDRAKYEATARNWTQKYAM 147
>sp|P35135|UBC4_LYCES Ubiquitin-conjugating enzyme E2-17 kDa (Ubiquitin-protein ligase)
(Ubiquitin carrier protein)
Length = 148
Score = 107 bits (266), Expect = 6e-23
Identities = 55/146 (37%), Positives = 80/146 (54%)
Frame = +3
Query: 297 SRRLQMESDILSKEQPYGISARCLDLKTLSSWMASIVGPPGSEYEGGLFYLLIKVPSSYP 476
S+R+ E L K+ P SA + + + W A+I+GP S Y GG+F + I P YP
Sbjct: 3 SKRILKELKDLQKDPPTSCSAGPV-AEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYP 61
Query: 477 MRPPSVQFLTRIYHPNISKHGEIGIDLLHNNWSLAXXXXXXXXXXXXXXTDPNGRICMEP 656
+PP V F T+++HPNI+ +G I +D+L WS A TDPN + P
Sbjct: 62 FKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVP 121
Query: 657 EIGEMYNKNPAEFKKTSRLWTWKFAM 734
EI MY + A+++ T+R WT K+AM
Sbjct: 122 EIAHMYKTDRAKYETTARSWTQKYAM 147
>sp|P46595|UBC4_SCHPO Ubiquitin-conjugating enzyme E2 4 (Ubiquitin-protein ligase 4)
(Ubiquitin carrier protein 4)
Length = 147
Score = 106 bits (265), Expect = 7e-23
Identities = 55/145 (37%), Positives = 80/145 (55%)
Frame = +3
Query: 300 RRLQMESDILSKEQPYGISARCLDLKTLSSWMASIVGPPGSEYEGGLFYLLIKVPSSYPM 479
+R+ E L K+ P SA + L W A+I+GP S Y GG+F+L I P+ YP
Sbjct: 4 KRINRELADLGKDPPSSCSAGPVG-DDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPF 62
Query: 480 RPPSVQFLTRIYHPNISKHGEIGIDLLHNNWSLAXXXXXXXXXXXXXXTDPNGRICMEPE 659
+PP V F TRIYHPNI+ +G I +D+L + WS A TDPN + PE
Sbjct: 63 KPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPE 122
Query: 660 IGEMYNKNPAEFKKTSRLWTWKFAM 734
I +Y + + ++ ++R WT K+A+
Sbjct: 123 IAHVYKTDRSRYELSAREWTRKYAI 147
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,544,376
Number of Sequences: 369166
Number of extensions: 2331424
Number of successful extensions: 7874
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7808
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8694177530
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)