Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_011_F11
(730 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O74196|UBC1_COLGL Ubiquitin-conjugating enzyme E2-16 kDa... 106 6e-23
sp|P25867|UBCD1_DROME Ubiquitin-conjugating enzyme E2-17 kD... 106 7e-23
sp|P70711|UB2D4_RAT Ubiquitin-conjugating enzyme E2 D4 (Ubi... 105 9e-23
sp|P35129|UBC2_CAEEL Ubiquitin-conjugating enzyme E2 2 (Ubi... 105 9e-23
sp|P35134|UBCB_ARATH Ubiquitin-conjugating enzyme E2-17 kDa... 105 9e-23
sp|Q9UVR2|UBC1_MAGGR Ubiquitin-conjugating enzyme E2-16 kDa... 105 9e-23
sp|P61080|UB2D1_MOUSE Ubiquitin-conjugating enzyme E2 D1 (U... 105 2e-22
sp|P61078|UB2D3_RAT Ubiquitin-conjugating enzyme E2 D3 (Ubi... 103 4e-22
sp|P46595|UBC4_SCHPO Ubiquitin-conjugating enzyme E2 4 (Ubi... 103 6e-22
sp|P62839|UB2D2_RAT Ubiquitin-conjugating enzyme E2 D2 (Ubi... 103 6e-22
>sp|O74196|UBC1_COLGL Ubiquitin-conjugating enzyme E2-16 kDa (Ubiquitin-protein ligase)
(Ubiquitin carrier protein) (Colletotrichum
hard-surface-induced protein 1)
Length = 147
Score = 106 bits (265), Expect = 6e-23
Identities = 50/118 (42%), Positives = 69/118 (58%)
Frame = +2
Query: 47 LSSWMASIVGPPGSEYEGGLFYLLIKVPSSYPMRPPSVQFLTRIYHPNISKHGEIGIDLL 226
L W A+I+GP S Y GG+F+L I P+ YP +PP V F TRIYHPNI+ +G I +D+L
Sbjct: 30 LFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDIL 89
Query: 227 HNNWSLAXXXXXXXXXXXXXXTDPNGRICMEPEIGEMYNKNPAEFKKTSRLWTWKFAM 400
+ WS A TDPN + PEI +Y + A ++ T+R WT K+A+
Sbjct: 90 RDQWSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDRARYEATAREWTRKYAI 147
>sp|P25867|UBCD1_DROME Ubiquitin-conjugating enzyme E2-17 kDa (Ubiquitin-protein ligase)
(Ubiquitin carrier protein) (Effete protein)
Length = 147
Score = 106 bits (264), Expect = 7e-23
Identities = 49/118 (41%), Positives = 69/118 (58%)
Frame = +2
Query: 47 LSSWMASIVGPPGSEYEGGLFYLLIKVPSSYPMRPPSVQFLTRIYHPNISKHGEIGIDLL 226
L W A+I+GPP S Y+GG+F+L I P+ YP +PP V F TRIYHPNI+ +G I +D+L
Sbjct: 30 LFHWQATIMGPPDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 89
Query: 227 HNNWSLAXXXXXXXXXXXXXXTDPNGRICMEPEIGEMYNKNPAEFKKTSRLWTWKFAM 400
+ WS A DPN + PEI +Y + ++ + +R WT K+AM
Sbjct: 90 RSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRKYAM 147
>sp|P70711|UB2D4_RAT Ubiquitin-conjugating enzyme E2 D4 (Ubiquitin-protein ligase D4)
(Ubiquitin carrier protein D4) (Ubiquitin-conjugating
enzyme E2-17 kDa 4) (E2(17)KB 4)
Length = 147
Score = 105 bits (263), Expect = 9e-23
Identities = 47/115 (40%), Positives = 69/115 (60%)
Frame = +2
Query: 56 WMASIVGPPGSEYEGGLFYLLIKVPSSYPMRPPSVQFLTRIYHPNISKHGEIGIDLLHNN 235
W A+I+GP S Y+GG F+L I P+ YP +PP V+F TRIYHPN++ +G I +D+L +
Sbjct: 33 WQATIMGPNDSPYQGGAFFLTIDFPTEYPFKPPKVEFTTRIYHPNVNSNGSICLDILRSQ 92
Query: 236 WSLAXXXXXXXXXXXXXXTDPNGRICMEPEIGEMYNKNPAEFKKTSRLWTWKFAM 400
WS A DPN + PEI ++Y + ++ +T+R WT K+AM
Sbjct: 93 WSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTAREWTQKYAM 147
>sp|P35129|UBC2_CAEEL Ubiquitin-conjugating enzyme E2 2 (Ubiquitin-protein ligase 2)
(Ubiquitin carrier protein 2)
Length = 147
Score = 105 bits (263), Expect = 9e-23
Identities = 49/118 (41%), Positives = 68/118 (57%)
Frame = +2
Query: 47 LSSWMASIVGPPGSEYEGGLFYLLIKVPSSYPMRPPSVQFLTRIYHPNISKHGEIGIDLL 226
L W A+I+GPP S Y+GG+F+L I P+ YP +PP V F TRIYHPNI+ +G I +D+L
Sbjct: 30 LFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDIL 89
Query: 227 HNNWSLAXXXXXXXXXXXXXXTDPNGRICMEPEIGEMYNKNPAEFKKTSRLWTWKFAM 400
+ WS A DPN + PEI +Y + + + +R WT K+AM
Sbjct: 90 RSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM 147
>sp|P35134|UBCB_ARATH Ubiquitin-conjugating enzyme E2-17 kDa 11 (Ubiquitin-protein ligase
11) (Ubiquitin carrier protein 11)
Length = 148
Score = 105 bits (263), Expect = 9e-23
Identities = 48/115 (41%), Positives = 67/115 (58%)
Frame = +2
Query: 56 WMASIVGPPGSEYEGGLFYLLIKVPSSYPMRPPSVQFLTRIYHPNISKHGEIGIDLLHNN 235
W A+I+GPP S Y GG+F + I P YP +PP V F T++YHPNI+ +G I +D+L
Sbjct: 33 WQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDILKEQ 92
Query: 236 WSLAXXXXXXXXXXXXXXTDPNGRICMEPEIGEMYNKNPAEFKKTSRLWTWKFAM 400
WS A TDPN + PEI MY + ++++ T+R WT K+AM
Sbjct: 93 WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYESTARSWTQKYAM 147
>sp|Q9UVR2|UBC1_MAGGR Ubiquitin-conjugating enzyme E2-16 kDa (Ubiquitin-protein ligase)
(Ubiquitin carrier protein)
Length = 147
Score = 105 bits (263), Expect = 9e-23
Identities = 50/118 (42%), Positives = 69/118 (58%)
Frame = +2
Query: 47 LSSWMASIVGPPGSEYEGGLFYLLIKVPSSYPMRPPSVQFLTRIYHPNISKHGEIGIDLL 226
L W A+I+GP S Y GG+F+L I P+ YP +PP V F TRIYHPNI+ +G I +D+L
Sbjct: 30 LFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDIL 89
Query: 227 HNNWSLAXXXXXXXXXXXXXXTDPNGRICMEPEIGEMYNKNPAEFKKTSRLWTWKFAM 400
+ WS A TDPN + PEI +Y A+++ T+R WT K+A+
Sbjct: 90 RDQWSPALTISKVLLSICSMLTDPNPDDPLVPEIAHVYRTARAQYEATAREWTPKYAI 147
>sp|P61080|UB2D1_MOUSE Ubiquitin-conjugating enzyme E2 D1 (Ubiquitin-protein ligase D1)
(Ubiquitin carrier protein D1) (Ubiquitin-conjugating
enzyme E2-17 kDa 1) (E2(17)KB 1)
sp|P51668|UB2D1_HUMAN Ubiquitin-conjugating enzyme E2 D1 (Ubiquitin-protein ligase D1)
(Ubiquitin carrier protein D1) (UbcH5)
(Ubiquitin-conjugating enzyme E2-17 kDa 1) (E2(17)KB 1)
Length = 147
Score = 105 bits (261), Expect = 2e-22
Identities = 45/118 (38%), Positives = 70/118 (59%)
Frame = +2
Query: 47 LSSWMASIVGPPGSEYEGGLFYLLIKVPSSYPMRPPSVQFLTRIYHPNISKHGEIGIDLL 226
L W A+I+GPP S Y+GG+F+L + P+ YP +PP + F T+IYHPNI+ +G I +D+L
Sbjct: 30 LFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDIL 89
Query: 227 HNNWSLAXXXXXXXXXXXXXXTDPNGRICMEPEIGEMYNKNPAEFKKTSRLWTWKFAM 400
+ WS A DPN + P+I ++Y + ++ + +R WT K+AM
Sbjct: 90 RSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 147
>sp|P61078|UB2D3_RAT Ubiquitin-conjugating enzyme E2 D3 (Ubiquitin-protein ligase D3)
(Ubiquitin carrier protein D3) (Ubiquitin-conjugating
enzyme E2-17 kDa 3) (E2(17)KB 3) (Phosphoarginine
phosphatase) (PAPase)
sp|P61079|UB2D3_MOUSE Ubiquitin-conjugating enzyme E2 D3 (Ubiquitin-protein ligase D3)
(Ubiquitin carrier protein D3) (Ubiquitin-conjugating
enzyme E2-17 kDa 3) (E2(17)KB 3)
sp|P61077|UB2D3_HUMAN Ubiquitin-conjugating enzyme E2 D3 (Ubiquitin-protein ligase D3)
(Ubiquitin carrier protein D3) (Ubiquitin-conjugating
enzyme E2-17 kDa 3) (E2(17)KB 3)
Length = 147
Score = 103 bits (258), Expect = 4e-22
Identities = 48/115 (41%), Positives = 67/115 (58%)
Frame = +2
Query: 56 WMASIVGPPGSEYEGGLFYLLIKVPSSYPMRPPSVQFLTRIYHPNISKHGEIGIDLLHNN 235
W A+I+GP S Y+GG+F+L I P+ YP +PP V F TRIYHPNI+ +G I +D+L +
Sbjct: 33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ 92
Query: 236 WSLAXXXXXXXXXXXXXXTDPNGRICMEPEIGEMYNKNPAEFKKTSRLWTWKFAM 400
WS A DPN + PEI +Y + ++ + SR WT K+AM
Sbjct: 93 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 147
>sp|P46595|UBC4_SCHPO Ubiquitin-conjugating enzyme E2 4 (Ubiquitin-protein ligase 4)
(Ubiquitin carrier protein 4)
Length = 147
Score = 103 bits (256), Expect = 6e-22
Identities = 48/118 (40%), Positives = 69/118 (58%)
Frame = +2
Query: 47 LSSWMASIVGPPGSEYEGGLFYLLIKVPSSYPMRPPSVQFLTRIYHPNISKHGEIGIDLL 226
L W A+I+GP S Y GG+F+L I P+ YP +PP V F TRIYHPNI+ +G I +D+L
Sbjct: 30 LFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDIL 89
Query: 227 HNNWSLAXXXXXXXXXXXXXXTDPNGRICMEPEIGEMYNKNPAEFKKTSRLWTWKFAM 400
+ WS A TDPN + PEI +Y + + ++ ++R WT K+A+
Sbjct: 90 RDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRKYAI 147
>sp|P62839|UB2D2_RAT Ubiquitin-conjugating enzyme E2 D2 (Ubiquitin-protein ligase D2)
(Ubiquitin carrier protein D2) (Ubiquitin-conjugating
enzyme E2-17 kDa 2) (E2(17)KB 2)
sp|P62838|UB2D2_MOUSE Ubiquitin-conjugating enzyme E2 D2 (Ubiquitin-protein ligase D2)
(Ubiquitin carrier protein D2) (Ubiquitin-conjugating
enzyme E2-17 kDa 2) (E2(17)KB 2)
sp|P62837|UB2D2_HUMAN Ubiquitin-conjugating enzyme E2 D2 (Ubiquitin-protein ligase D2)
(Ubiquitin carrier protein D2) (Ubiquitin-conjugating
enzyme E2-17 kDa 2) (E2(17)KB 2)
sp|P62840|UB5B_XENLA Ubiquitin-conjugating enzyme E2 D2 (Ubiquitin-protein ligase D2)
(Ubiquitin carrier protein D2) (Xubc4)
Length = 147
Score = 103 bits (256), Expect = 6e-22
Identities = 47/115 (40%), Positives = 67/115 (58%)
Frame = +2
Query: 56 WMASIVGPPGSEYEGGLFYLLIKVPSSYPMRPPSVQFLTRIYHPNISKHGEIGIDLLHNN 235
W A+I+GP S Y+GG+F+L I P+ YP +PP V F TRIYHPNI+ +G I +D+L +
Sbjct: 33 WQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ 92
Query: 236 WSLAXXXXXXXXXXXXXXTDPNGRICMEPEIGEMYNKNPAEFKKTSRLWTWKFAM 400
WS A DPN + PEI +Y + ++ + +R WT K+AM
Sbjct: 93 WSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,140,028
Number of Sequences: 369166
Number of extensions: 1590738
Number of successful extensions: 4372
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4349
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6486082400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)