DrC_00404
- Cluster detail
- GO Category :
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00404 (1221 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q5R5J4|VPS53_PONPY Vacuolar protein sorting protein 53 198 3e-50 sp|Q5VIR6|VPS53_HUMAN Vacuolar protein sorting protein 53 197 5e-50 sp|P34561|YNP8_CAEEL Hypothetical protein T05G5.8 in chromo... 196 1e-49 sp|P87129|YDLF_SCHPO Hypothetical protein C3A12.15 in chrom... 119 2e-26 sp|Q8K0U4|HS12A_MOUSE Heat shock 70 kDa protein 12A 33 1.3 sp|Q9SL29|CNG15_ARATH Putative cyclic nucleotide-gated ion ... 33 1.7 sp|O06994|O16G_BACSU Oligo-1,6-glucosidase (Oligosaccharide... 33 2.2 sp|P34160|GCR3_YEAST Protein GCR3 (Protein STO1) (Protein S... 32 2.8 sp|P13395|SPTCA_DROME Spectrin alpha chain 32 4.8 sp|Q7VAW6|OTC_PROMA Ornithine carbamoyltransferase (OTCase) 32 4.8
>sp|Q5R5J4|VPS53_PONPY Vacuolar protein sorting protein 53 Length = 699 Score = 198 bits (503), Expect = 3e-50 Identities = 107/246 (43%), Positives = 157/246 (63%), Gaps = 3/246 (1%) Frame = +3 Query: 111 LNSATNLFLLYRKLLNQAPQLSRGQALVDLSKVLGKYLREYNNKVLLAQLPLKKTGVLSM 290 L S +LF+ Y+K + Q QLS G+ ++ L+ + KYLREY K+L LP Sbjct: 468 LPSCADLFVYYKKCMVQCSQLSTGEPMIALTTIFQKYLREYAWKILSGNLP--------- 518 Query: 291 ANSLTGSGGTVLSANQIIQSLLKDEQ---IFRLSKEDIKKVSVILVTACYCLKTVEELEK 461 + T SGG +S SLLK+++ + + + E++ + IL TA YCL T ++LE+ Sbjct: 519 -KTTTSSGGLTIS------SLLKEKEGSEVAKFTLEELCLICSILSTAEYCLATTQQLEE 571 Query: 462 RLKSKVKPPALSKDIDFSGEIELFNQCRTSCVQLMSSDLEGACDPGLTAMHKMSWASIEV 641 +LK KV + + I+ +GE++ F+ +S +QL+ DL+ ACDP LTAM KM W ++E Sbjct: 572 KLKEKVDVSLIER-INLTGEMDTFSTVISSSIQLLVQDLDAACDPALTAMSKMQWQNVEH 630 Query: 642 VGDQSNYVTSIISHLRENIPLIRQYLHNVRAFFTQFCIQFVNGFISKFISALFKCRVTST 821 VGDQS YVTS+I H+++N+P+IR L + R +FTQFCI+F N FI KFI+ LFKC+ S Sbjct: 631 VGDQSPYVTSVILHIKQNVPIIRDNLASTRKYFTQFCIKFANSFIPKFITHLFKCKPISM 690 Query: 822 VGAEQL 839 VGAEQ+ Sbjct: 691 VGAEQV 696
>sp|Q5VIR6|VPS53_HUMAN Vacuolar protein sorting protein 53 Length = 699 Score = 197 bits (501), Expect = 5e-50 Identities = 106/246 (43%), Positives = 157/246 (63%), Gaps = 3/246 (1%) Frame = +3 Query: 111 LNSATNLFLLYRKLLNQAPQLSRGQALVDLSKVLGKYLREYNNKVLLAQLPLKKTGVLSM 290 L S +LF+ Y+K + Q QLS G+ ++ L+ + KYLREY K+L LP Sbjct: 468 LPSCADLFVYYKKCMVQCSQLSTGEPMIALTTIFQKYLREYAWKILSGNLP--------- 518 Query: 291 ANSLTGSGGTVLSANQIIQSLLKDEQ---IFRLSKEDIKKVSVILVTACYCLKTVEELEK 461 + T SGG +S SLLK+++ + + + E++ + IL TA YCL T ++LE+ Sbjct: 519 -KTTTSSGGLTIS------SLLKEKEGSEVAKFTLEELCLICNILSTAEYCLATTQQLEE 571 Query: 462 RLKSKVKPPALSKDIDFSGEIELFNQCRTSCVQLMSSDLEGACDPGLTAMHKMSWASIEV 641 +LK KV + + I+ +GE++ F+ +S +QL+ DL+ ACDP LTAM KM W ++E Sbjct: 572 KLKEKVDVSLIER-INLTGEMDTFSTVISSSIQLLVQDLDAACDPALTAMSKMQWQNVEH 630 Query: 642 VGDQSNYVTSIISHLRENIPLIRQYLHNVRAFFTQFCIQFVNGFISKFISALFKCRVTST 821 VGDQS YVTS+I H+++N+P+IR L + R +FTQFC++F N FI KFI+ LFKC+ S Sbjct: 631 VGDQSPYVTSVILHIKQNVPIIRDNLASTRKYFTQFCVKFANSFIPKFITHLFKCKPISM 690 Query: 822 VGAEQL 839 VGAEQ+ Sbjct: 691 VGAEQV 696
>sp|P34561|YNP8_CAEEL Hypothetical protein T05G5.8 in chromosome III Length = 808 Score = 196 bits (497), Expect = 1e-49 Identities = 125/383 (32%), Positives = 208/383 (54%), Gaps = 18/383 (4%) Frame = +3 Query: 27 KDKEFEEILGESRDPITDNYSDDSAENSLN-----SATNLFLLYRKLLNQAPQLS-RGQA 188 ++K E L I S E+S + S+ ++FLL +K++ ++ +LS A Sbjct: 374 QEKTLNEFLDTCASKIRSGEEKPSRESSTHAVPFPSSADMFLLLKKVITESSKLSSEPDA 433 Query: 189 LV-DLSKVLGKYLREYNNKVLLAQLPLKKTGVLSMANSLTGSGGTVLSANQIIQSLLKDE 365 L+ D+ V+ LR Y L+A LP S+ + +G+ + SL+++E Sbjct: 434 LIRDVIGVVRVCLRGYATSCLVAFLP-------SLGSQQSGAAN--------LFSLIREE 478 Query: 366 QIF-RLSKEDIKKVSVILVTACYCLKTVEELEKRLKSKVKPPALSKDIDFSGEIELFNQC 542 + RL+ + V IL TA +C +T +L+++L ++ +D S E E F Sbjct: 479 IAYPRLTPDQQFLVCCILATADWCAETSIQLQEKLSQRIP------GVDISQETEAFYSI 532 Query: 543 RTSCVQLMSSDLEGACDPGLTAMHKM----------SWASIEVVGDQSNYVTSIISHLRE 692 +Q++ D+E CD L ++ K+ +W +++ VGD+S ++ S+ +HLR+ Sbjct: 533 TNQSLQVLVQDVESTCDAALQSISKVKCSIFVRIEKTWTAVDCVGDESPFIGSMRAHLRQ 592 Query: 693 NIPLIRQYLHNVRAFFTQFCIQFVNGFISKFISALFKCRVTSTVGAEQLLLDTHSLKTVL 872 +PLIR L + R +F FC++ KF+ +LF+CR ST GAEQLLL+THSLKT L Sbjct: 593 AVPLIRDMLSDRRKYFAHFCLKLATQLAHKFVGSLFRCRTISTHGAEQLLLETHSLKTFL 652 Query: 873 LKLPIIGSKIYPEPPRSFTTVVLQGMGHAEKIIKVVMTPCVRSADFVDGALHLLPDCDSV 1052 L +P I S I +PP ++ T V + AE I+KVVM +FV+ + LLP D+ Sbjct: 653 LSVPSIDSIINSKPPTAYVTSVNAALTKAEMILKVVMCSLETVDEFVEQYIKLLPASDAA 712 Query: 1053 ELQKILDMKGMKRPEQTSIIDLF 1121 E+QK+L+MKG+KR E +++++ + Sbjct: 713 EMQKVLEMKGVKRQEHSAVLNAY 735
>sp|P87129|YDLF_SCHPO Hypothetical protein C3A12.15 in chromosome I Length = 756 Score = 119 bits (298), Expect = 2e-26 Identities = 92/345 (26%), Positives = 151/345 (43%) Frame = +3 Query: 87 SDDSAENSLNSATNLFLLYRKLLNQAPQLSRGQALVDLSKVLGKYLREYNNKVLLAQLPL 266 S D + L+S+ LF YRK L Q +L+R LV L + K+LR Y LL Sbjct: 395 STDESSQVLSSSIKLFQAYRKTLTQFVRLTRSSPLVGLKNLFIKWLRRYTQVELL----- 449 Query: 267 KKTGVLSMANSLTGSGGTVLSANQIIQSLLKDEQIFRLSKEDIKKVSVILVTACYCLKTV 446 D Q K +++ L TA Y +T Sbjct: 450 -------------------------------DYQ----ESSTFKDIAIRLNTAEYIYRTT 474 Query: 447 EELEKRLKSKVKPPALSKDIDFSGEIELFNQCRTSCVQLMSSDLEGACDPGLTAMHKMSW 626 ELEKR + ++ + FS +E+ + R + ++ + E + L + KM Sbjct: 475 IELEKRFQ-EISNKEFKDKMSFSEVLEVISSSRGTLLKFATGKFENVLNSDLEPLSKMDL 533 Query: 627 ASIEVVGDQSNYVTSIISHLRENIPLIRQYLHNVRAFFTQFCIQFVNGFISKFISALFKC 806 +IE VGDQS+YV + ++ + ++ F FC + F +F++A++ Sbjct: 534 KNIETVGDQSSYVGGAVQNMTAKASEFLSVV-DLNMFARNFCDRSCESFTRQFLNAIYLA 592 Query: 807 RVTSTVGAEQLLLDTHSLKTVLLKLPIIGSKIYPEPPRSFTTVVLQGMGHAEKIIKVVMT 986 + S VGAEQLLLD +S K LLKLP + K S+ + MG+ E ++K ++T Sbjct: 593 KPISEVGAEQLLLDLYSFKNALLKLPDL--KQDYSITDSYINHLTIFMGYIETVLKTLLT 650 Query: 987 PCVRSADFVDGALHLLPDCDSVELQKILDMKGMKRPEQTSIIDLF 1121 P A F+ + L+ D +L++KG+ + + +S + F Sbjct: 651 PASPKAGFIQSYIFLVKDRSVTNFTVLLELKGVGKSDISSFLQQF 695
>sp|Q8K0U4|HS12A_MOUSE Heat shock 70 kDa protein 12A Length = 675 Score = 33.5 bits (75), Expect = 1.3 Identities = 22/73 (30%), Positives = 37/73 (50%) Frame = +3 Query: 207 VLGKYLREYNNKVLLAQLPLKKTGVLSMANSLTGSGGTVLSANQIIQSLLKDEQIFRLSK 386 ++ Y E++N + +KK G L + LTGSGGT + A + IQ+ I + Sbjct: 599 IINIYSSEHDNVSFITDPGVKKCGTLRL--DLTGSGGTAVPARREIQT------IMQFGD 650 Query: 387 EDIKKVSVILVTA 425 +IK +V + T+ Sbjct: 651 TEIKATAVDITTS 663
>sp|Q9SL29|CNG15_ARATH Putative cyclic nucleotide-gated ion channel 15 (Cyclic nucleotide-and calmodulin-regulated ion channel 15) Length = 678 Score = 33.1 bits (74), Expect = 1.7 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 4/87 (4%) Frame = +3 Query: 177 RGQALVDLSKVLGKYLREYNNKVLLAQLPLKKTGVLSMANSLTGSGGT----VLSANQII 344 RG+ ++D K+ +YL + L+A LPL + + + +L GS T VL I Sbjct: 152 RGELVIDSRKIAWRYLHKSFWIHLVAALPLPQVLIWIIIPNLRGSPMTNTKNVLRFIIIF 211 Query: 345 QSLLKDEQIFRLSKEDIKKVSVILVTA 425 Q + + IF LS++ IK V+ TA Sbjct: 212 QYVPRMFLIFPLSRQIIKATGVVTETA 238
>sp|O06994|O16G_BACSU Oligo-1,6-glucosidase (Oligosaccharide alpha-1,6-glucosidase) (Sucrase-isomaltase) (Isomaltase) (Dextrin 6-alpha-D-glucanohydrolase) Length = 561 Score = 32.7 bits (73), Expect = 2.2 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 5/82 (6%) Frame = +3 Query: 54 GESRDPITDNYSDDSAENSLNSATNLFLLYRKLLNQAPQ-----LSRGQALVDLSKVLGK 218 G+ P+ Y D + + SL ++F Y+KL+ Q Q L + + Sbjct: 438 GDPWIPVNSRYQDINVKESLEDQDSIFFYYQKLIQLRKQYKIMIYGDYQLLQENDPQVFS 497 Query: 219 YLREYNNKVLLAQLPLKKTGVL 284 YLREY + LL + L + L Sbjct: 498 YLREYRGEKLLVVVNLSEEKAL 519
>sp|P34160|GCR3_YEAST Protein GCR3 (Protein STO1) (Protein SUT1) Length = 861 Score = 32.3 bits (72), Expect = 2.8 Identities = 24/96 (25%), Positives = 48/96 (50%), Gaps = 2/96 (2%) Frame = +3 Query: 144 RKLLNQAPQLSRGQALVDLSKVLGKYLREYNNKVLLAQLPLKKTGVLSMANSLTGSGGTV 323 RK+L+ + + + + +L +LG+ EY + + + ++ + ++T SG Sbjct: 595 RKILDYTHKANNSREVTELESILGELKNEYGSII----SDFNRFVIILLVQAVTDSGSRS 650 Query: 324 LS-ANQIIQSLLKD-EQIFRLSKEDIKKVSVILVTA 425 LS AN+ I L +D + IF + DI+ I++ A Sbjct: 651 LSHANKYINDLKEDLKTIFAKIELDIETKEYIIIEA 686
>sp|P13395|SPTCA_DROME Spectrin alpha chain Length = 2415 Score = 31.6 bits (70), Expect = 4.8 Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 1/77 (1%) Frame = +3 Query: 33 KEFEEILGESRDPITDNYSDDSAENSLNSA-TNLFLLYRKLLNQAPQLSRGQALVDLSKV 209 K+ + L S+ + DN+S +N +NS NL L R+ N+ + + LV + Sbjct: 1025 KKIDAGLSASQQNLVDNHSIAKRQNQINSQYDNLLALARERQNKLNETVKAYVLVREAAD 1084 Query: 210 LGKYLREYNNKVLLAQL 260 L +++R+ N +A + Sbjct: 1085 LAQWIRDKENHAQIADV 1101
>sp|Q7VAW6|OTC_PROMA Ornithine carbamoyltransferase (OTCase) Length = 318 Score = 31.6 bits (70), Expect = 4.8 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 5/57 (8%) Frame = +3 Query: 150 LLNQAPQLSRGQALVDLSKVLGKY-----LREYNNKVLLAQLPLKKTGVLSMANSLT 305 L NQA QL+RG+ L D ++VL +Y LR + N L + K + + N+LT Sbjct: 84 LSNQATQLARGEPLKDTARVLSRYCDALALRTFGNDEL---IEYAKWSSIPVINALT 137
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,519,150
Number of Sequences: 369166
Number of extensions: 2469392
Number of successful extensions: 6197
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6190
length of database: 68,354,980
effective HSP length: 113
effective length of database: 47,479,925
effective search space used: 13911618025
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
