Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_026_K08
(714 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P34561|YNP8_CAEEL Hypothetical protein T05G5.8 in chromo... 163 5e-40
sp|Q5R5J4|VPS53_PONPY Vacuolar protein sorting protein 53 132 9e-31
sp|Q5VIR6|VPS53_HUMAN Vacuolar protein sorting protein 53 132 1e-30
sp|P87129|YDLF_SCHPO Hypothetical protein C3A12.15 in chrom... 92 1e-18
sp|Q9Z9G6|GATB_CHLPN Aspartyl/glutamyl-tRNA(Asn/Gln) amidot... 30 4.9
sp|Q9SMJ3|ZDS_CAPAN Zeta-carotene desaturase, chloroplast p... 30 6.4
>sp|P34561|YNP8_CAEEL Hypothetical protein T05G5.8 in chromosome III
Length = 808
Score = 163 bits (412), Expect = 5e-40
Identities = 83/213 (38%), Positives = 129/213 (60%), Gaps = 10/213 (4%)
Frame = +3
Query: 6 SGEIELFNQCRTSCVQLMSSDLEGACDPGLTAMHKM----------SWASIEVVGDQSNY 155
S E E F +Q++ D+E CD L ++ K+ +W +++ VGD+S +
Sbjct: 523 SQETEAFYSITNQSLQVLVQDVESTCDAALQSISKVKCSIFVRIEKTWTAVDCVGDESPF 582
Query: 156 VTSIISHLRENIPLIRQYLHNVRAFFTQFCIQFVNGFISKFISALFKCRVTSTVGAEQLL 335
+ S+ +HLR+ +PLIR L + R +F FC++ KF+ +LF+CR ST GAEQLL
Sbjct: 583 IGSMRAHLRQAVPLIRDMLSDRRKYFAHFCLKLATQLAHKFVGSLFRCRTISTHGAEQLL 642
Query: 336 LDTHSLKTVLLKLPIIGSKIYPEPPRSFTTVVLQGMGHAEKIIKVVMTPCVRSADFVDGA 515
L+THSLKT LL +P I S I +PP ++ T V + AE I+KVVM +FV+
Sbjct: 643 LETHSLKTFLLSVPSIDSIINSKPPTAYVTSVNAALTKAEMILKVVMCSLETVDEFVEQY 702
Query: 516 LHLLPDCDSVELQKILDMKGMKRPEQTSIIDLF 614
+ LLP D+ E+QK+L+MKG+KR E +++++ +
Sbjct: 703 IKLLPASDAAEMQKVLEMKGVKRQEHSAVLNAY 735
>sp|Q5R5J4|VPS53_PONPY Vacuolar protein sorting protein 53
Length = 699
Score = 132 bits (332), Expect = 9e-31
Identities = 60/109 (55%), Positives = 82/109 (75%)
Frame = +3
Query: 6 SGEIELFNQCRTSCVQLMSSDLEGACDPGLTAMHKMSWASIEVVGDQSNYVTSIISHLRE 185
+GE++ F+ +S +QL+ DL+ ACDP LTAM KM W ++E VGDQS YVTS+I H+++
Sbjct: 588 TGEMDTFSTVISSSIQLLVQDLDAACDPALTAMSKMQWQNVEHVGDQSPYVTSVILHIKQ 647
Query: 186 NIPLIRQYLHNVRAFFTQFCIQFVNGFISKFISALFKCRVTSTVGAEQL 332
N+P+IR L + R +FTQFCI+F N FI KFI+ LFKC+ S VGAEQ+
Sbjct: 648 NVPIIRDNLASTRKYFTQFCIKFANSFIPKFITHLFKCKPISMVGAEQV 696
>sp|Q5VIR6|VPS53_HUMAN Vacuolar protein sorting protein 53
Length = 699
Score = 132 bits (331), Expect = 1e-30
Identities = 59/109 (54%), Positives = 82/109 (75%)
Frame = +3
Query: 6 SGEIELFNQCRTSCVQLMSSDLEGACDPGLTAMHKMSWASIEVVGDQSNYVTSIISHLRE 185
+GE++ F+ +S +QL+ DL+ ACDP LTAM KM W ++E VGDQS YVTS+I H+++
Sbjct: 588 TGEMDTFSTVISSSIQLLVQDLDAACDPALTAMSKMQWQNVEHVGDQSPYVTSVILHIKQ 647
Query: 186 NIPLIRQYLHNVRAFFTQFCIQFVNGFISKFISALFKCRVTSTVGAEQL 332
N+P+IR L + R +FTQFC++F N FI KFI+ LFKC+ S VGAEQ+
Sbjct: 648 NVPIIRDNLASTRKYFTQFCVKFANSFIPKFITHLFKCKPISMVGAEQV 696
>sp|P87129|YDLF_SCHPO Hypothetical protein C3A12.15 in chromosome I
Length = 756
Score = 92.0 bits (227), Expect = 1e-18
Identities = 57/204 (27%), Positives = 101/204 (49%)
Frame = +3
Query: 3 FSGEIELFNQCRTSCVQLMSSDLEGACDPGLTAMHKMSWASIEVVGDQSNYVTSIISHLR 182
FS +E+ + R + ++ + E + L + KM +IE VGDQS+YV + ++
Sbjct: 495 FSEVLEVISSSRGTLLKFATGKFENVLNSDLEPLSKMDLKNIETVGDQSSYVGGAVQNMT 554
Query: 183 ENIPLIRQYLHNVRAFFTQFCIQFVNGFISKFISALFKCRVTSTVGAEQLLLDTHSLKTV 362
+ ++ F FC + F +F++A++ + S VGAEQLLLD +S K
Sbjct: 555 AKASEFLSVV-DLNMFARNFCDRSCESFTRQFLNAIYLAKPISEVGAEQLLLDLYSFKNA 613
Query: 363 LLKLPIIGSKIYPEPPRSFTTVVLQGMGHAEKIIKVVMTPCVRSADFVDGALHLLPDCDS 542
LLKLP + K S+ + MG+ E ++K ++TP A F+ + L+ D
Sbjct: 614 LLKLPDL--KQDYSITDSYINHLTIFMGYIETVLKTLLTPASPKAGFIQSYIFLVKDRSV 671
Query: 543 VELQKILDMKGMKRPEQTSIIDLF 614
+L++KG+ + + +S + F
Sbjct: 672 TNFTVLLELKGVGKSDISSFLQQF 695
>sp|Q9Z9G6|GATB_CHLPN Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
(Asp/Glu-ADT subunit B)
Length = 488
Score = 30.4 bits (67), Expect = 4.9
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Frame = +3
Query: 354 KTVLLKLPIIGSKIYPEPPRSFTTVVLQGM--GHAEKIIKVVM--TPCVRSADFVDGALH 521
KT+ +KLP G I+PE + QG+ G K I +M +P + +
Sbjct: 364 KTLGVKLPSSG--IFPEGVAQLVNAIDQGVITGKIAKEIADLMMESPGKNPEEILKEKPE 421
Query: 522 LLPDCDSVELQKILDMKGMKRPEQTSIID 608
LLP D ELQKI+ + PE SI+D
Sbjct: 422 LLPMSDEGELQKIIAEVVLANPE--SIVD 448
>sp|Q9SMJ3|ZDS_CAPAN Zeta-carotene desaturase, chloroplast precursor (Carotene
7,8-desaturase)
Length = 588
Score = 30.0 bits (66), Expect = 6.4
Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 8/103 (7%)
Frame = +3
Query: 300 RVTSTVGAEQLLLDTHSLKTVLLKLPIIGSKIYPEPPRS--------FTTVVLQGMGHAE 455
R+ VGAE+ LL T + K IG + P + +T L+ A
Sbjct: 145 RLMKKVGAEKNLLVKEHTHTFVNKGGEIGELDFRFPVGAPLHGINAFLSTNQLKTYDKAR 204
Query: 456 KIIKVVMTPCVRSADFVDGALHLLPDCDSVELQKILDMKGMKR 584
+ + ++P VR+ DGAL + D DSV KG R
Sbjct: 205 NAVALALSPVVRALVDPDGALQQIRDLDSVSFSDWFMSKGGTR 247
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,047,550
Number of Sequences: 369166
Number of extensions: 1546665
Number of successful extensions: 3345
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3342
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6316483550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)