DrC_00403
- Cluster detail
- GO Category :
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00403 (918 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P40926|MDHM_HUMAN Malate dehydrogenase, mitochondrial pr... 362 e-100 sp|P04636|MDHM_RAT Malate dehydrogenase, mitochondrial prec... 361 1e-99 sp|P00346|MDHM_PIG Malate dehydrogenase, mitochondrial prec... 361 2e-99 sp|P08249|MDHM_MOUSE Malate dehydrogenase, mitochondrial pr... 360 2e-99 sp|O02640|MDHM_CAEEL Probable malate dehydrogenase, mitocho... 327 3e-89 sp|O82399|MDHI_ARATH Probable malate dehydrogenase, glyoxys... 308 2e-83 sp|Q42972|MDHG_ORYSA Malate dehydrogenase, glyoxysomal prec... 307 3e-83 sp|P19446|MDHG_CITLA Malate dehydrogenase, glyoxysomal prec... 302 1e-81 sp|P46488|MDHG_CUCSA Malate dehydrogenase, glyoxysomal prec... 301 2e-81 sp|Q9ZP05|MDHG_ARATH Malate dehydrogenase, glyoxysomal prec... 300 4e-81
>sp|P40926|MDHM_HUMAN Malate dehydrogenase, mitochondrial precursor Length = 338 Score = 362 bits (930), Expect = e-100 Identities = 186/293 (63%), Positives = 218/293 (74%) Frame = +2 Query: 29 IARSFSTCQTLNAKVAVLGASGGIGQPMSLLLKKSSAVDRLALYDIAHVKGVAADLSHIE 208 + RSFST NAKVAVLGASGGIGQP+SLLLK S V RL LYDIAH GVAADLSHIE Sbjct: 13 LRRSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIE 72 Query: 209 TPAVVNGYLGPSELLECLKNSDVVVIPAGVPRKPGMTRDDLFNTNASIVADLVHGCAQAC 388 T A V GYLGP +L +CLK DVVVIPAGVPRKPGMTRDDLFNTNA+IVA L CAQ C Sbjct: 73 TKAAVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC 132 Query: 389 PKAIICIITNPVNSTVPIAAEILKKAGCYDPKRLFGVTTLDIVRSNTFISEAKHLDVTKM 568 P+A+IC+I NPVNST+PI AE+ KK G Y+P ++FGVTTLDIVR+NTF++E K LD ++ Sbjct: 133 PEAMICVIANPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARV 192 Query: 569 PVPVIGGHSGVTIVPVISQAIPSVSFPESEISKLTIRIQNAGTEVVEAKAGAGSATLSMA 748 VPVIGGH+G TI+P+ISQ P V FP+ +++ LT RIQ AGTEVV+AKAGAGSATLSMA Sbjct: 193 NVPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMA 252 Query: 749 YAGVRFVKRILAAMKGNKNICRVCICGIKYNRSKILC*PSFAWT**IEKNLGL 907 YAG RFV ++ AM G + + + P IEKNLG+ Sbjct: 253 YAGARFVFSLVDAMNGKEGVVECSFVKSQETECTYFSTPLLLGKKGIEKNLGI 305
>sp|P04636|MDHM_RAT Malate dehydrogenase, mitochondrial precursor Length = 338 Score = 361 bits (927), Expect = 1e-99 Identities = 186/293 (63%), Positives = 219/293 (74%) Frame = +2 Query: 29 IARSFSTCQTLNAKVAVLGASGGIGQPMSLLLKKSSAVDRLALYDIAHVKGVAADLSHIE 208 + RSFST NAKVAVLGASGGIGQP+SLLLK S V RL LYDIAH GVAADLSHIE Sbjct: 13 LRRSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIE 72 Query: 209 TPAVVNGYLGPSELLECLKNSDVVVIPAGVPRKPGMTRDDLFNTNASIVADLVHGCAQAC 388 T A V GYLGP +L +CLK DVVVIPAGVPRKPGMTRDDLFNTNA+IVA L CAQ C Sbjct: 73 TRANVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC 132 Query: 389 PKAIICIITNPVNSTVPIAAEILKKAGCYDPKRLFGVTTLDIVRSNTFISEAKHLDVTKM 568 P+A+ICII+NPVNST+PI AE+ KK G Y+P ++FGVTTLDIVR+NTF++E K LD ++ Sbjct: 133 PEAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARV 192 Query: 569 PVPVIGGHSGVTIVPVISQAIPSVSFPESEISKLTIRIQNAGTEVVEAKAGAGSATLSMA 748 VPVIGGH+G TI+P+ISQ P V FP+ +++ LT +IQ AGTEVV+AKAGAGSATLSMA Sbjct: 193 NVPVIGGHAGKTIIPLISQCTPKVDFPQDQLATLTGKIQEAGTEVVKAKAGAGSATLSMA 252 Query: 749 YAGVRFVKRILAAMKGNKNICRVCICGIKYNRSKILC*PSFAWT**IEKNLGL 907 YAG RFV ++ AM G + + K P +EKNLG+ Sbjct: 253 YAGARFVFSLVDAMNGKEGVIECSFVQSKETECTYFSTPLLLGKKGLEKNLGI 305
>sp|P00346|MDHM_PIG Malate dehydrogenase, mitochondrial precursor Length = 338 Score = 361 bits (926), Expect = 2e-99 Identities = 187/293 (63%), Positives = 217/293 (74%) Frame = +2 Query: 29 IARSFSTCQTLNAKVAVLGASGGIGQPMSLLLKKSSAVDRLALYDIAHVKGVAADLSHIE 208 + RSFST NAKVAVLGASGGIGQP+SLLLK S V RL LYDIAH GVAADLSHIE Sbjct: 13 LRRSFSTSXQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIE 72 Query: 209 TPAVVNGYLGPSELLECLKNSDVVVIPAGVPRKPGMTRDDLFNTNASIVADLVHGCAQAC 388 T A V GYLGP +L +CLK DVVVIPAGVPRKPGMTRDDLFNTNA+IVA L CAQ C Sbjct: 73 TRATVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC 132 Query: 389 PKAIICIITNPVNSTVPIAAEILKKAGCYDPKRLFGVTTLDIVRSNTFISEAKHLDVTKM 568 P A+ICII+NPVNST+PI AE+ KK G Y+P ++FGVTTLDIVR+N F++E K LD ++ Sbjct: 133 PDAMICIISNPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARV 192 Query: 569 PVPVIGGHSGVTIVPVISQAIPSVSFPESEISKLTIRIQNAGTEVVEAKAGAGSATLSMA 748 VPVIGGH+G TI+P+ISQ P V FP+ ++S LT RIQ AGTEVV+AKAGAGSATLSMA Sbjct: 193 SVPVIGGHAGKTIIPLISQCTPKVDFPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMA 252 Query: 749 YAGVRFVKRILAAMKGNKNICRVCICGIKYNRSKILC*PSFAWT**IEKNLGL 907 YAG RFV ++ AM G + + + P IEKNLG+ Sbjct: 253 YAGARFVFSLVDAMNGKEGVVECSFVKSQETDCPYFSTPLLLGKKGIEKNLGI 305
>sp|P08249|MDHM_MOUSE Malate dehydrogenase, mitochondrial precursor Length = 338 Score = 360 bits (925), Expect = 2e-99 Identities = 186/293 (63%), Positives = 218/293 (74%) Frame = +2 Query: 29 IARSFSTCQTLNAKVAVLGASGGIGQPMSLLLKKSSAVDRLALYDIAHVKGVAADLSHIE 208 + RSFST NAKVAVLGASGGIGQP+SLLLK S V RL LYDIAH GVAADLSHIE Sbjct: 13 LRRSFSTSAQNNAKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIE 72 Query: 209 TPAVVNGYLGPSELLECLKNSDVVVIPAGVPRKPGMTRDDLFNTNASIVADLVHGCAQAC 388 T A V GYLGP +L +CLK DVVVIPAGVPRKPGMTRDDLFNTNA+IVA L CAQ C Sbjct: 73 TRANVKGYLGPEQLPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHC 132 Query: 389 PKAIICIITNPVNSTVPIAAEILKKAGCYDPKRLFGVTTLDIVRSNTFISEAKHLDVTKM 568 P+A++CII NPVNST+PI AE+ KK G Y+P ++FGVTTLDIVR+NTF++E K LD ++ Sbjct: 133 PEAMVCIIANPVNSTIPITAEVFKKHGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARV 192 Query: 569 PVPVIGGHSGVTIVPVISQAIPSVSFPESEISKLTIRIQNAGTEVVEAKAGAGSATLSMA 748 VPVIGGH+G TI+P+ISQ P V FP+ +++ LT RIQ AGTEVV+AKAGAGSATLSMA Sbjct: 193 NVPVIGGHAGKTIIPLISQCTPKVDFPQDQLATLTGRIQEAGTEVVKAKAGAGSATLSMA 252 Query: 749 YAGVRFVKRILAAMKGNKNICRVCICGIKYNRSKILC*PSFAWT**IEKNLGL 907 YAG RFV ++ AM G + + K P +EKNLG+ Sbjct: 253 YAGARFVFSLVDAMNGLEGVVECSFVQSKETECTYFSTPLLLGKKGLEKNLGI 305
>sp|O02640|MDHM_CAEEL Probable malate dehydrogenase, mitochondrial precursor Length = 341 Score = 327 bits (838), Expect = 3e-89 Identities = 164/247 (66%), Positives = 196/247 (79%) Frame = +2 Query: 68 KVAVLGASGGIGQPMSLLLKKSSAVDRLALYDIAHVKGVAADLSHIETPAVVNGYLGPSE 247 KVA+LGA+GGIGQP+ LLLK+ V LALYD+ + GVAADLSHI++ A V + GP E Sbjct: 30 KVALLGAAGGIGQPLGLLLKQDPLVAHLALYDVVNTPGVAADLSHIDSNAKVTAHTGPKE 89 Query: 248 LLECLKNSDVVVIPAGVPRKPGMTRDDLFNTNASIVADLVHGCAQACPKAIICIITNPVN 427 L ++N+DV+VIPAGVPRKPGMTRDDLFNTNA IV DL A+A PKA+I IITNPVN Sbjct: 90 LYAAVENADVIVIPAGVPRKPGMTRDDLFNTNAGIVRDLAAVIAKASPKALIAIITNPVN 149 Query: 428 STVPIAAEILKKAGCYDPKRLFGVTTLDIVRSNTFISEAKHLDVTKMPVPVIGGHSGVTI 607 STVPIA+E+LKKAG YDPKR+FGVTTLD+VRS F+SE K D +K VPV+GGH+G+TI Sbjct: 150 STVPIASEVLKKAGVYDPKRVFGVTTLDVVRSQAFVSELKGHDASKTVVPVVGGHAGITI 209 Query: 608 VPVISQAIPSVSFPESEISKLTIRIQNAGTEVVEAKAGAGSATLSMAYAGVRFVKRILAA 787 +P++SQ PS F E EISKLT RIQ+AGTEVV AKAGAGSATLSMA AG RF ++ Sbjct: 210 IPLLSQVKPSTKFSEEEISKLTPRIQDAGTEVVNAKAGAGSATLSMALAGARFANALVRG 269 Query: 788 MKGNKNI 808 +KG KN+ Sbjct: 270 IKGEKNV 276
>sp|O82399|MDHI_ARATH Probable malate dehydrogenase, glyoxysomal precursor Length = 354 Score = 308 bits (788), Expect = 2e-83 Identities = 153/247 (61%), Positives = 190/247 (76%) Frame = +2 Query: 68 KVAVLGASGGIGQPMSLLLKKSSAVDRLALYDIAHVKGVAADLSHIETPAVVNGYLGPSE 247 KVA+LGA+GGIGQP+++L+K + V L LYD+A+ GV AD+SH++T AVV G+LG + Sbjct: 44 KVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVANAPGVTADISHMDTSAVVRGFLGQPQ 103 Query: 248 LLECLKNSDVVVIPAGVPRKPGMTRDDLFNTNASIVADLVHGCAQACPKAIICIITNPVN 427 L E L D+V+IPAGVPRKPGMTRDDLFN NA IV L A+ CPKAI+ II+NPVN Sbjct: 104 LEEALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLSEAIAKCCPKAIVNIISNPVN 163 Query: 428 STVPIAAEILKKAGCYDPKRLFGVTTLDIVRSNTFISEAKHLDVTKMPVPVIGGHSGVTI 607 STVPIAAE+ KKAG +DPK+L GVT LD+VR+NTF++E LD ++ VPV+GGH+GVTI Sbjct: 164 STVPIAAEVFKKAGTFDPKKLMGVTMLDVVRANTFVAEVMSLDpreVEVPVVGGHAGVTI 223 Query: 608 VPVISQAIPSVSFPESEISKLTIRIQNAGTEVVEAKAGAGSATLSMAYAGVRFVKRILAA 787 +P++SQ P SF + EI LT RIQN GTEVVEAKAGAGSATLSMAYA V F L Sbjct: 224 LPLLSQVKPPCSFTQKEIEYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRG 283 Query: 788 MKGNKNI 808 ++G+ NI Sbjct: 284 LRGDANI 290
Score = 31.2 bits (69), Expect = 4.3
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +3
Query: 810 VECAFVESNITEAKFFANPLLLG 878
VECA+V S++TE FFA+ + LG
Sbjct: 291 VECAYVASHVTELPFFASKVRLG 313
>sp|Q42972|MDHG_ORYSA Malate dehydrogenase, glyoxysomal precursor Length = 356 Score = 307 bits (786), Expect = 3e-83 Identities = 158/259 (61%), Positives = 190/259 (73%), Gaps = 4/259 (1%) Frame = +2 Query: 44 STCQTLNA----KVAVLGASGGIGQPMSLLLKKSSAVDRLALYDIAHVKGVAADLSHIET 211 S C+ A KVA+LGASGGIGQP++LL+K + V L LYD+ + GV AD+SH+ T Sbjct: 34 SNCRAKGAAPGFKVAILGASGGIGQPLALLMKMNPLVSVLHLYDVVNTPGVTADISHMNT 93 Query: 212 PAVVNGYLGPSELLECLKNSDVVVIPAGVPRKPGMTRDDLFNTNASIVADLVHGCAQACP 391 AVV G+LG +L L D+V+IPAGVPRKPGMTRDDLFN NA IV L G A+ CP Sbjct: 94 GAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP 153 Query: 392 KAIICIITNPVNSTVPIAAEILKKAGCYDPKRLFGVTTLDIVRSNTFISEAKHLDVTKMP 571 AI+ +I+NPVNSTVPIAAE+ KKAG YDPKRL GVTTLD+VR+NTF++E LD + Sbjct: 154 NAIVNVISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTTLDVVRANTFVAEVLGLDPRDVN 213 Query: 572 VPVIGGHSGVTIVPVISQAIPSVSFPESEISKLTIRIQNAGTEVVEAKAGAGSATLSMAY 751 VPVIGGH+GVTI+P++SQ P SF EIS LT RIQN GTEVVEAKAGAGSATLSMAY Sbjct: 214 VPVIGGHAGVTILPLLSQVNPPCSFTSEEISYLTTRIQNGGTEVVEAKAGAGSATLSMAY 273 Query: 752 AGVRFVKRILAAMKGNKNI 808 A +F L ++G+ I Sbjct: 274 AASKFADACLRGLRGDAGI 292
Score = 30.8 bits (68), Expect = 5.6
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +3
Query: 810 VECAFVESNITEAKFFANPLLLG 878
VEC+FV S +TE FFA+ + LG
Sbjct: 293 VECSFVASQVTELPFFASKVRLG 315
>sp|P19446|MDHG_CITLA Malate dehydrogenase, glyoxysomal precursor Length = 356 Score = 302 bits (773), Expect = 1e-81 Identities = 148/247 (59%), Positives = 188/247 (76%) Frame = +2 Query: 68 KVAVLGASGGIGQPMSLLLKKSSAVDRLALYDIAHVKGVAADLSHIETPAVVNGYLGPSE 247 KVA+LGA+GGIGQP+++L+K + V L LYD+ + GV AD+SH++T AVV G+LG + Sbjct: 46 KVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQ 105 Query: 248 LLECLKNSDVVVIPAGVPRKPGMTRDDLFNTNASIVADLVHGCAQACPKAIICIITNPVN 427 L L D++++PAGVPRKPGMTRDDLF NA IV L G A+ CP+AI+ +I+NPVN Sbjct: 106 LEAALTGMDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVN 165 Query: 428 STVPIAAEILKKAGCYDPKRLFGVTTLDIVRSNTFISEAKHLDVTKMPVPVIGGHSGVTI 607 STVPIAAE+ KKAG YDPKRL GVT LD+VR+NTF++E LD + VPV+GGH+GVTI Sbjct: 166 STVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTI 225 Query: 608 VPVISQAIPSVSFPESEISKLTIRIQNAGTEVVEAKAGAGSATLSMAYAGVRFVKRILAA 787 +P++SQ P SF + EIS LT RIQN GTEVVEAKAGAGSATLSMAYA V+F L Sbjct: 226 LPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRG 285 Query: 788 MKGNKNI 808 ++G+ + Sbjct: 286 LRGDAGV 292
Score = 32.0 bits (71), Expect = 2.5
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +3
Query: 810 VECAFVESNITEAKFFANPLLLG 878
+ECAFV S +TE FFA+ + LG
Sbjct: 293 IECAFVSSQVTELPFFASKVRLG 315
>sp|P46488|MDHG_CUCSA Malate dehydrogenase, glyoxysomal precursor Length = 356 Score = 301 bits (770), Expect = 2e-81 Identities = 150/247 (60%), Positives = 187/247 (75%) Frame = +2 Query: 68 KVAVLGASGGIGQPMSLLLKKSSAVDRLALYDIAHVKGVAADLSHIETPAVVNGYLGPSE 247 KVA+LGA+GGIGQP+++L+K + V L LYD+ + GV AD+SH++T AVV G+LG + Sbjct: 46 KVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQ 105 Query: 248 LLECLKNSDVVVIPAGVPRKPGMTRDDLFNTNASIVADLVHGCAQACPKAIICIITNPVN 427 L L D+VVIPAGVPRKPGMTRDDLF NA IV L G A+ CP AI+ +I+NPVN Sbjct: 106 LERALTGMDLVVIPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPTAIVNLISNPVN 165 Query: 428 STVPIAAEILKKAGCYDPKRLFGVTTLDIVRSNTFISEAKHLDVTKMPVPVIGGHSGVTI 607 STVPIAAE+ KKAG YDPKRL GVT LD+VR+NTF++E LD + VPV+GGH+GVTI Sbjct: 166 STVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVNVPVVGGHAGVTI 225 Query: 608 VPVISQAIPSVSFPESEISKLTIRIQNAGTEVVEAKAGAGSATLSMAYAGVRFVKRILAA 787 +P++SQ P SF + EI+ LT RIQN GTEVVEAKAGAGSATLSMAYA V+F L Sbjct: 226 LPLLSQVKPPSSFTQEEINYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRG 285 Query: 788 MKGNKNI 808 ++G+ + Sbjct: 286 LRGDAGV 292
Score = 32.0 bits (71), Expect = 2.5
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +3
Query: 810 VECAFVESNITEAKFFANPLLLG 878
VECAFV S +TE FFA + LG
Sbjct: 293 VECAFVSSQVTELPFFATKVRLG 315
>sp|Q9ZP05|MDHG_ARATH Malate dehydrogenase, glyoxysomal precursor (mbNAD-MDH) Length = 354 Score = 300 bits (768), Expect = 4e-81 Identities = 148/247 (59%), Positives = 186/247 (75%) Frame = +2 Query: 68 KVAVLGASGGIGQPMSLLLKKSSAVDRLALYDIAHVKGVAADLSHIETPAVVNGYLGPSE 247 KVA+LGA+GGIGQ +SLL+K + V L LYD+ + GV AD+SH++T AVV G+LG + Sbjct: 44 KVAILGAAGGIGQSLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQ 103 Query: 248 LLECLKNSDVVVIPAGVPRKPGMTRDDLFNTNASIVADLVHGCAQACPKAIICIITNPVN 427 L + L D+V+IPAG+PRKPGMTRDDLF NA IV L G A+ CP AI+ +I+NPVN Sbjct: 104 LEDALTGMDLVIIPAGIPRKPGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISNPVN 163 Query: 428 STVPIAAEILKKAGCYDPKRLFGVTTLDIVRSNTFISEAKHLDVTKMPVPVIGGHSGVTI 607 STVPIAAE+ KKAG YDPK+L GVTTLD+ R+NTF++E LD ++ VPV+GGH+GVTI Sbjct: 164 STVPIAAEVFKKAGTYDPKKLLGVTTLDVARANTFVAEVLGLDpreVDVPVVGGHAGVTI 223 Query: 608 VPVISQAIPSVSFPESEISKLTIRIQNAGTEVVEAKAGAGSATLSMAYAGVRFVKRILAA 787 +P++SQ P SF EI LT RIQN GTEVVEAKAGAGSATLSMAYA +F L Sbjct: 224 LPLLSQVKPPSSFTPQEIEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRG 283 Query: 788 MKGNKNI 808 ++G+ N+ Sbjct: 284 LRGDANV 290
Score = 30.4 bits (67), Expect = 7.3
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 810 VECAFVESNITEAKFFANPLLLG 878
VEC+FV S +TE FFA + LG
Sbjct: 291 VECSFVASQVTELAFFATKVRLG 313
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,310,348
Number of Sequences: 369166
Number of extensions: 2176828
Number of successful extensions: 6573
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6393
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9366655350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
