Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Dr_sW_007_N06 (815 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P40926|MDHM_HUMAN Malate dehydrogenase, mitochondrial pr... 329 5e-90 sp|P04636|MDHM_RAT Malate dehydrogenase, mitochondrial prec... 328 1e-89 sp|P00346|MDHM_PIG Malate dehydrogenase, mitochondrial prec... 328 1e-89 sp|P08249|MDHM_MOUSE Malate dehydrogenase, mitochondrial pr... 327 2e-89 sp|O02640|MDHM_CAEEL Probable malate dehydrogenase, mitocho... 307 2e-83 sp|O82399|MDHI_ARATH Probable malate dehydrogenase, glyoxys... 287 2e-77 sp|Q42972|MDHG_ORYSA Malate dehydrogenase, glyoxysomal prec... 285 1e-76 sp|P19446|MDHG_CITLA Malate dehydrogenase, glyoxysomal prec... 281 1e-75 sp|P46488|MDHG_CUCSA Malate dehydrogenase, glyoxysomal prec... 280 3e-75 sp|Q9ZP05|MDHG_ARATH Malate dehydrogenase, glyoxysomal prec... 280 4e-75
>sp|P40926|MDHM_HUMAN Malate dehydrogenase, mitochondrial precursor Length = 338 Score = 329 bits (844), Expect = 5e-90 Identities = 167/268 (62%), Positives = 198/268 (73%) Frame = +1 Query: 1 QPMSLLLKKSSAVDRLALYDIAHVKGVAADLSHIETPAVVNGYLGPSELLECLKNSDVVV 180 QP+SLLLK S V RL LYDIAH GVAADLSHIET A V GYLGP +L +CLK DVVV Sbjct: 38 QPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETKAAVKGYLGPEQLPDCLKGCDVVV 97 Query: 181 IPAGVPRKPGMTRDDLFNTNASIVADLVHGCAQACPKAIICIITNPVNSTVPIAAEILKK 360 IPAGVPRKPGMTRDDLFNTNA+IVA L CAQ CP+A+IC+I NPVNST+PI AE+ KK Sbjct: 98 IPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICVIANPVNSTIPITAEVFKK 157 Query: 361 AGCYDPKRLFGVTTLDIVRSNTFISEAKHLDVTKMPVPVIGGHSGVTIVPVISQAIPSVS 540 G Y+P ++FGVTTLDIVR+NTF++E K LD ++ VPVIGGH+G TI+P+ISQ P V Sbjct: 158 HGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVD 217 Query: 541 FPESEISKLTIRIQNAGTEVVEAKAGAGSATLSMAYAGVRFVKRILAAMKGNKNICRVCI 720 FP+ +++ LT RIQ AGTEVV+AKAGAGSATLSMAYAG RFV ++ AM G + + Sbjct: 218 FPQDQLTALTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSF 277 Query: 721 CGIKYNRSKILC*PSFAWT**IEKNLGL 804 + P IEKNLG+ Sbjct: 278 VKSQETECTYFSTPLLLGKKGIEKNLGI 305
>sp|P04636|MDHM_RAT Malate dehydrogenase, mitochondrial precursor Length = 338 Score = 328 bits (841), Expect = 1e-89 Identities = 167/268 (62%), Positives = 199/268 (74%) Frame = +1 Query: 1 QPMSLLLKKSSAVDRLALYDIAHVKGVAADLSHIETPAVVNGYLGPSELLECLKNSDVVV 180 QP+SLLLK S V RL LYDIAH GVAADLSHIET A V GYLGP +L +CLK DVVV Sbjct: 38 QPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRANVKGYLGPEQLPDCLKGCDVVV 97 Query: 181 IPAGVPRKPGMTRDDLFNTNASIVADLVHGCAQACPKAIICIITNPVNSTVPIAAEILKK 360 IPAGVPRKPGMTRDDLFNTNA+IVA L CAQ CP+A+ICII+NPVNST+PI AE+ KK Sbjct: 98 IPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMICIISNPVNSTIPITAEVFKK 157 Query: 361 AGCYDPKRLFGVTTLDIVRSNTFISEAKHLDVTKMPVPVIGGHSGVTIVPVISQAIPSVS 540 G Y+P ++FGVTTLDIVR+NTF++E K LD ++ VPVIGGH+G TI+P+ISQ P V Sbjct: 158 HGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVD 217 Query: 541 FPESEISKLTIRIQNAGTEVVEAKAGAGSATLSMAYAGVRFVKRILAAMKGNKNICRVCI 720 FP+ +++ LT +IQ AGTEVV+AKAGAGSATLSMAYAG RFV ++ AM G + + Sbjct: 218 FPQDQLATLTGKIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVIECSF 277 Query: 721 CGIKYNRSKILC*PSFAWT**IEKNLGL 804 K P +EKNLG+ Sbjct: 278 VQSKETECTYFSTPLLLGKKGLEKNLGI 305
>sp|P00346|MDHM_PIG Malate dehydrogenase, mitochondrial precursor Length = 338 Score = 328 bits (840), Expect = 1e-89 Identities = 168/268 (62%), Positives = 197/268 (73%) Frame = +1 Query: 1 QPMSLLLKKSSAVDRLALYDIAHVKGVAADLSHIETPAVVNGYLGPSELLECLKNSDVVV 180 QP+SLLLK S V RL LYDIAH GVAADLSHIET A V GYLGP +L +CLK DVVV Sbjct: 38 QPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVV 97 Query: 181 IPAGVPRKPGMTRDDLFNTNASIVADLVHGCAQACPKAIICIITNPVNSTVPIAAEILKK 360 IPAGVPRKPGMTRDDLFNTNA+IVA L CAQ CP A+ICII+NPVNST+PI AE+ KK Sbjct: 98 IPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPVNSTIPITAEVFKK 157 Query: 361 AGCYDPKRLFGVTTLDIVRSNTFISEAKHLDVTKMPVPVIGGHSGVTIVPVISQAIPSVS 540 G Y+P ++FGVTTLDIVR+N F++E K LD ++ VPVIGGH+G TI+P+ISQ P V Sbjct: 158 HGVYNPNKIFGVTTLDIVRANAFVAELKGLDPARVSVPVIGGHAGKTIIPLISQCTPKVD 217 Query: 541 FPESEISKLTIRIQNAGTEVVEAKAGAGSATLSMAYAGVRFVKRILAAMKGNKNICRVCI 720 FP+ ++S LT RIQ AGTEVV+AKAGAGSATLSMAYAG RFV ++ AM G + + Sbjct: 218 FPQDQLSTLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGKEGVVECSF 277 Query: 721 CGIKYNRSKILC*PSFAWT**IEKNLGL 804 + P IEKNLG+ Sbjct: 278 VKSQETDCPYFSTPLLLGKKGIEKNLGI 305
>sp|P08249|MDHM_MOUSE Malate dehydrogenase, mitochondrial precursor Length = 338 Score = 327 bits (839), Expect = 2e-89 Identities = 167/268 (62%), Positives = 198/268 (73%) Frame = +1 Query: 1 QPMSLLLKKSSAVDRLALYDIAHVKGVAADLSHIETPAVVNGYLGPSELLECLKNSDVVV 180 QP+SLLLK S V RL LYDIAH GVAADLSHIET A V GYLGP +L +CLK DVVV Sbjct: 38 QPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRANVKGYLGPEQLPDCLKGCDVVV 97 Query: 181 IPAGVPRKPGMTRDDLFNTNASIVADLVHGCAQACPKAIICIITNPVNSTVPIAAEILKK 360 IPAGVPRKPGMTRDDLFNTNA+IVA L CAQ CP+A++CII NPVNST+PI AE+ KK Sbjct: 98 IPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPEAMVCIIANPVNSTIPITAEVFKK 157 Query: 361 AGCYDPKRLFGVTTLDIVRSNTFISEAKHLDVTKMPVPVIGGHSGVTIVPVISQAIPSVS 540 G Y+P ++FGVTTLDIVR+NTF++E K LD ++ VPVIGGH+G TI+P+ISQ P V Sbjct: 158 HGVYNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVD 217 Query: 541 FPESEISKLTIRIQNAGTEVVEAKAGAGSATLSMAYAGVRFVKRILAAMKGNKNICRVCI 720 FP+ +++ LT RIQ AGTEVV+AKAGAGSATLSMAYAG RFV ++ AM G + + Sbjct: 218 FPQDQLATLTGRIQEAGTEVVKAKAGAGSATLSMAYAGARFVFSLVDAMNGLEGVVECSF 277 Query: 721 CGIKYNRSKILC*PSFAWT**IEKNLGL 804 K P +EKNLG+ Sbjct: 278 VQSKETECTYFSTPLLLGKKGLEKNLGI 305
>sp|O02640|MDHM_CAEEL Probable malate dehydrogenase, mitochondrial precursor Length = 341 Score = 307 bits (787), Expect = 2e-83 Identities = 154/235 (65%), Positives = 184/235 (78%) Frame = +1 Query: 1 QPMSLLLKKSSAVDRLALYDIAHVKGVAADLSHIETPAVVNGYLGPSELLECLKNSDVVV 180 QP+ LLLK+ V LALYD+ + GVAADLSHI++ A V + GP EL ++N+DV+V Sbjct: 42 QPLGLLLKQDPLVAHLALYDVVNTPGVAADLSHIDSNAKVTAHTGPKELYAAVENADVIV 101 Query: 181 IPAGVPRKPGMTRDDLFNTNASIVADLVHGCAQACPKAIICIITNPVNSTVPIAAEILKK 360 IPAGVPRKPGMTRDDLFNTNA IV DL A+A PKA+I IITNPVNSTVPIA+E+LKK Sbjct: 102 IPAGVPRKPGMTRDDLFNTNAGIVRDLAAVIAKASPKALIAIITNPVNSTVPIASEVLKK 161 Query: 361 AGCYDPKRLFGVTTLDIVRSNTFISEAKHLDVTKMPVPVIGGHSGVTIVPVISQAIPSVS 540 AG YDPKR+FGVTTLD+VRS F+SE K D +K VPV+GGH+G+TI+P++SQ PS Sbjct: 162 AGVYDPKRVFGVTTLDVVRSQAFVSELKGHDASKTVVPVVGGHAGITIIPLLSQVKPSTK 221 Query: 541 FPESEISKLTIRIQNAGTEVVEAKAGAGSATLSMAYAGVRFVKRILAAMKGNKNI 705 F E EISKLT RIQ+AGTEVV AKAGAGSATLSMA AG RF ++ +KG KN+ Sbjct: 222 FSEEEISKLTPRIQDAGTEVVNAKAGAGSATLSMALAGARFANALVRGIKGEKNV 276
>sp|O82399|MDHI_ARATH Probable malate dehydrogenase, glyoxysomal precursor Length = 354 Score = 287 bits (735), Expect = 2e-77 Identities = 143/235 (60%), Positives = 178/235 (75%) Frame = +1 Query: 1 QPMSLLLKKSSAVDRLALYDIAHVKGVAADLSHIETPAVVNGYLGPSELLECLKNSDVVV 180 QP+++L+K + V L LYD+A+ GV AD+SH++T AVV G+LG +L E L D+V+ Sbjct: 56 QPLAMLMKMNPLVSVLHLYDVANAPGVTADISHMDTSAVVRGFLGQPQLEEALTGMDLVI 115 Query: 181 IPAGVPRKPGMTRDDLFNTNASIVADLVHGCAQACPKAIICIITNPVNSTVPIAAEILKK 360 IPAGVPRKPGMTRDDLFN NA IV L A+ CPKAI+ II+NPVNSTVPIAAE+ KK Sbjct: 116 IPAGVPRKPGMTRDDLFNINAGIVRTLSEAIAKCCPKAIVNIISNPVNSTVPIAAEVFKK 175 Query: 361 AGCYDPKRLFGVTTLDIVRSNTFISEAKHLDVTKMPVPVIGGHSGVTIVPVISQAIPSVS 540 AG +DPK+L GVT LD+VR+NTF++E LD ++ VPV+GGH+GVTI+P++SQ P S Sbjct: 176 AGTFDPKKLMGVTMLDVVRANTFVAEVMSLDpreVEVPVVGGHAGVTILPLLSQVKPPCS 235 Query: 541 FPESEISKLTIRIQNAGTEVVEAKAGAGSATLSMAYAGVRFVKRILAAMKGNKNI 705 F + EI LT RIQN GTEVVEAKAGAGSATLSMAYA V F L ++G+ NI Sbjct: 236 FTQKEIEYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVEFADACLRGLRGDANI 290
Score = 31.2 bits (69), Expect = 3.6 Identities = 13/23 (56%), Positives = 18/23 (78%) Frame = +2 Query: 707 VECAFVESNITEAKFFANPLLLG 775 VECA+V S++TE FFA+ + LG Sbjct: 291 VECAYVASHVTELPFFASKVRLG 313
>sp|Q42972|MDHG_ORYSA Malate dehydrogenase, glyoxysomal precursor Length = 356 Score = 285 bits (729), Expect = 1e-76 Identities = 144/235 (61%), Positives = 174/235 (74%) Frame = +1 Query: 1 QPMSLLLKKSSAVDRLALYDIAHVKGVAADLSHIETPAVVNGYLGPSELLECLKNSDVVV 180 QP++LL+K + V L LYD+ + GV AD+SH+ T AVV G+LG +L L D+V+ Sbjct: 58 QPLALLMKMNPLVSVLHLYDVVNTPGVTADISHMNTGAVVRGFLGQPQLENALTGMDLVI 117 Query: 181 IPAGVPRKPGMTRDDLFNTNASIVADLVHGCAQACPKAIICIITNPVNSTVPIAAEILKK 360 IPAGVPRKPGMTRDDLFN NA IV L G A+ CP AI+ +I+NPVNSTVPIAAE+ KK Sbjct: 118 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNVISNPVNSTVPIAAEVFKK 177 Query: 361 AGCYDPKRLFGVTTLDIVRSNTFISEAKHLDVTKMPVPVIGGHSGVTIVPVISQAIPSVS 540 AG YDPKRL GVTTLD+VR+NTF++E LD + VPVIGGH+GVTI+P++SQ P S Sbjct: 178 AGTYDPKRLLGVTTLDVVRANTFVAEVLGLDPRDVNVPVIGGHAGVTILPLLSQVNPPCS 237 Query: 541 FPESEISKLTIRIQNAGTEVVEAKAGAGSATLSMAYAGVRFVKRILAAMKGNKNI 705 F EIS LT RIQN GTEVVEAKAGAGSATLSMAYA +F L ++G+ I Sbjct: 238 FTSEEISYLTTRIQNGGTEVVEAKAGAGSATLSMAYAASKFADACLRGLRGDAGI 292
Score = 30.8 bits (68), Expect = 4.6 Identities = 13/23 (56%), Positives = 17/23 (73%) Frame = +2 Query: 707 VECAFVESNITEAKFFANPLLLG 775 VEC+FV S +TE FFA+ + LG Sbjct: 293 VECSFVASQVTELPFFASKVRLG 315
>sp|P19446|MDHG_CITLA Malate dehydrogenase, glyoxysomal precursor Length = 356 Score = 281 bits (720), Expect = 1e-75 Identities = 138/235 (58%), Positives = 176/235 (74%) Frame = +1 Query: 1 QPMSLLLKKSSAVDRLALYDIAHVKGVAADLSHIETPAVVNGYLGPSELLECLKNSDVVV 180 QP+++L+K + V L LYD+ + GV AD+SH++T AVV G+LG +L L D+++ Sbjct: 58 QPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLII 117 Query: 181 IPAGVPRKPGMTRDDLFNTNASIVADLVHGCAQACPKAIICIITNPVNSTVPIAAEILKK 360 +PAGVPRKPGMTRDDLF NA IV L G A+ CP+AI+ +I+NPVNSTVPIAAE+ KK Sbjct: 118 VPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPVNSTVPIAAEVFKK 177 Query: 361 AGCYDPKRLFGVTTLDIVRSNTFISEAKHLDVTKMPVPVIGGHSGVTIVPVISQAIPSVS 540 AG YDPKRL GVT LD+VR+NTF++E LD + VPV+GGH+GVTI+P++SQ P S Sbjct: 178 AGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSS 237 Query: 541 FPESEISKLTIRIQNAGTEVVEAKAGAGSATLSMAYAGVRFVKRILAAMKGNKNI 705 F + EIS LT RIQN GTEVVEAKAGAGSATLSMAYA V+F L ++G+ + Sbjct: 238 FTQEEISYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGV 292
Score = 32.0 bits (71), Expect = 2.1 Identities = 13/23 (56%), Positives = 17/23 (73%) Frame = +2 Query: 707 VECAFVESNITEAKFFANPLLLG 775 +ECAFV S +TE FFA+ + LG Sbjct: 293 IECAFVSSQVTELPFFASKVRLG 315
>sp|P46488|MDHG_CUCSA Malate dehydrogenase, glyoxysomal precursor Length = 356 Score = 280 bits (717), Expect = 3e-75 Identities = 140/235 (59%), Positives = 175/235 (74%) Frame = +1 Query: 1 QPMSLLLKKSSAVDRLALYDIAHVKGVAADLSHIETPAVVNGYLGPSELLECLKNSDVVV 180 QP+++L+K + V L LYD+ + GV AD+SH++T AVV G+LG +L L D+VV Sbjct: 58 QPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLERALTGMDLVV 117 Query: 181 IPAGVPRKPGMTRDDLFNTNASIVADLVHGCAQACPKAIICIITNPVNSTVPIAAEILKK 360 IPAGVPRKPGMTRDDLF NA IV L G A+ CP AI+ +I+NPVNSTVPIAAE+ KK Sbjct: 118 IPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPTAIVNLISNPVNSTVPIAAEVFKK 177 Query: 361 AGCYDPKRLFGVTTLDIVRSNTFISEAKHLDVTKMPVPVIGGHSGVTIVPVISQAIPSVS 540 AG YDPKRL GVT LD+VR+NTF++E LD + VPV+GGH+GVTI+P++SQ P S Sbjct: 178 AGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVNVPVVGGHAGVTILPLLSQVKPPSS 237 Query: 541 FPESEISKLTIRIQNAGTEVVEAKAGAGSATLSMAYAGVRFVKRILAAMKGNKNI 705 F + EI+ LT RIQN GTEVVEAKAGAGSATLSMAYA V+F L ++G+ + Sbjct: 238 FTQEEINYLTDRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGV 292
Score = 32.0 bits (71), Expect = 2.1 Identities = 14/23 (60%), Positives = 16/23 (69%) Frame = +2 Query: 707 VECAFVESNITEAKFFANPLLLG 775 VECAFV S +TE FFA + LG Sbjct: 293 VECAFVSSQVTELPFFATKVRLG 315
>sp|Q9ZP05|MDHG_ARATH Malate dehydrogenase, glyoxysomal precursor (mbNAD-MDH) Length = 354 Score = 280 bits (715), Expect = 4e-75 Identities = 138/235 (58%), Positives = 174/235 (74%) Frame = +1 Query: 1 QPMSLLLKKSSAVDRLALYDIAHVKGVAADLSHIETPAVVNGYLGPSELLECLKNSDVVV 180 Q +SLL+K + V L LYD+ + GV AD+SH++T AVV G+LG +L + L D+V+ Sbjct: 56 QSLSLLMKMNPLVSLLHLYDVVNAPGVTADVSHMDTGAVVRGFLGAKQLEDALTGMDLVI 115 Query: 181 IPAGVPRKPGMTRDDLFNTNASIVADLVHGCAQACPKAIICIITNPVNSTVPIAAEILKK 360 IPAG+PRKPGMTRDDLF NA IV L G A+ CP AI+ +I+NPVNSTVPIAAE+ KK Sbjct: 116 IPAGIPRKPGMTRDDLFKINAGIVKTLCEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKK 175 Query: 361 AGCYDPKRLFGVTTLDIVRSNTFISEAKHLDVTKMPVPVIGGHSGVTIVPVISQAIPSVS 540 AG YDPK+L GVTTLD+ R+NTF++E LD ++ VPV+GGH+GVTI+P++SQ P S Sbjct: 176 AGTYDPKKLLGVTTLDVARANTFVAEVLGLDpreVDVPVVGGHAGVTILPLLSQVKPPSS 235 Query: 541 FPESEISKLTIRIQNAGTEVVEAKAGAGSATLSMAYAGVRFVKRILAAMKGNKNI 705 F EI LT RIQN GTEVVEAKAGAGSATLSMAYA +F L ++G+ N+ Sbjct: 236 FTPQEIEYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAAKFADACLRGLRGDANV 290
Score = 30.4 bits (67), Expect = 6.1 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +2 Query: 707 VECAFVESNITEAKFFANPLLLG 775 VEC+FV S +TE FFA + LG Sbjct: 291 VECSFVASQVTELAFFATKVRLG 313
Database: Non-redundant SwissProt sequences Posted date: Dec 6, 2005 7:40 AM Number of letters in database: 68,354,980 Number of sequences in database: 184,735 Database: swissprot.01 Posted date: Dec 6, 2005 8:18 AM Number of letters in database: 66,202,850 Number of sequences in database: 184,431 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,918,893 Number of Sequences: 369166 Number of extensions: 1925466 Number of successful extensions: 5791 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 5400 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5643 length of database: 68,354,980 effective HSP length: 109 effective length of database: 48,218,865 effective search space used: 7811456130 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)