Planaria EST Database

DrC_00402

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00402
         (1003 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P16967|SSRA_CANFA  Translocon-associated protein alpha su...   147   4e-35
sp|Q9CY50|SSRA_MOUSE  Translocon-associated protein alpha su...   147   4e-35
sp|P43307|SSRA_HUMAN  Translocon-associated protein alpha su...   147   5e-35
sp|Q5R4X4|SSRA_PONPY  Translocon-associated protein alpha su...   146   1e-34
sp|P53815|SSRA_RABIT  Translocon-associated protein alpha su...   145   2e-34
sp|Q7TPJ0|SSRA_RAT  Translocon-associated protein alpha subu...   138   3e-32
sp|P45433|SSRA_ONCMY  Translocon-associated protein alpha su...   136   1e-31
sp|P45434|SSRA_ARATH  Translocon-associated protein alpha su...    43   0.002
sp|P32499|NUP2_YEAST  Nucleoporin NUP2 (Nuclear pore protein...    33   1.7  
sp|P50898|MIG1_KLULA  Regulatory protein MIG1                      32   3.7  

>sp|P16967|SSRA_CANFA Translocon-associated protein alpha subunit precursor (TRAP-alpha)
           (Signal sequence receptor alpha subunit) (SSR-alpha)
           (PGP35)
          Length = 286

 Score =  147 bits (372), Expect = 4e-35
 Identities = 93/263 (35%), Positives = 137/263 (52%), Gaps = 5/263 (1%)
 Frame = +1

Query: 154 DDSAAEEAEDKLNEDKIVTEILDSQQDQTEQTFIDGVPVASKNVQAELLFTEPPYNKRSS 333
           +DS  E+ +D+   ++   E  D  +D+ E+  + G P AS +    +LF +        
Sbjct: 43  EDSIIEDEDDEAEVEE--DEPTDLAEDKEEED-VSGEPEASPSADTTILFVK-------- 91

Query: 334 GVGIELPANKPVKMLISFTNTETETNKDYKLVHVEGFLRYPSDYSYYLQNFTARPLDITV 513
             G + PAN  VK L+ FTN  TE   D+ +  ++   RYP DY +Y+QNFTA PL+  V
Sbjct: 92  --GEDFPANNIVKFLVGFTNKGTE---DFIVESLDASFRYPQDYQFYIQNFTALPLNTVV 146

Query: 514 EPKREATVYYSFTPAQQLAGRPFGLTLRIAYHNNDGKMFTSTFFNDTVQVIEIEEGFDTE 693
            P+R+AT  YSF PA+ + GRPFGL + + Y + +G +F    FN TV +IE E+G D E
Sbjct: 147 PPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTIIEREDGLDGE 206

Query: 694 SXXXXXXXXXXXXXXXXXXXHLFTVYALKKFKKSGVSK---QVMELGTSNKADLDLQWIP 864
           +                    L  V  L +  +S   K   Q +E+GTS++ D+D+ WIP
Sbjct: 207 TIFMYMFLAGLG---------LLVVVGLHQLLESRKRKRPIQKVEMGTSSQNDVDMSWIP 257

Query: 865 AEHLKV--RQSPTISPRKRKSRR 927
            E L    + SP   PRKR  +R
Sbjct: 258 QETLNQINKASPRRLPRKRAQKR 280

>sp|Q9CY50|SSRA_MOUSE Translocon-associated protein alpha subunit precursor (TRAP-alpha)
           (Signal sequence receptor alpha subunit) (SSR-alpha)
          Length = 286

 Score =  147 bits (372), Expect = 4e-35
 Identities = 93/265 (35%), Positives = 137/265 (51%), Gaps = 5/265 (1%)
 Frame = +1

Query: 148 VTDDSAAEEAEDKLNEDKIVTEILDSQQDQTEQTFIDGVPVASKNVQAELLFTEPPYNKR 327
           + +DS  E+ +D+   ++   E  D  +D+ E+  +   P AS +    +LF +      
Sbjct: 41  IVEDSIIEDEDDEAEVEE--DEPTDLAEDKEEED-VSSEPEASPSADTTILFVK------ 91

Query: 328 SSGVGIELPANKPVKMLISFTNTETETNKDYKLVHVEGFLRYPSDYSYYLQNFTARPLDI 507
               G + PAN  VK L+ FTN  TE   D+ +  ++   RYP DY +Y+QNFTA PL+ 
Sbjct: 92  ----GEDFPANNIVKFLVGFTNKGTE---DFIVESLDASFRYPQDYQFYIQNFTALPLNT 144

Query: 508 TVEPKREATVYYSFTPAQQLAGRPFGLTLRIAYHNNDGKMFTSTFFNDTVQVIEIEEGFD 687
            V P+R+AT  YSF PA+ + GRPFGL + + Y + +G +F    FN TV VIE E+G D
Sbjct: 145 VVPPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLD 204

Query: 688 TESXXXXXXXXXXXXXXXXXXXHLFTVYALKKFKKSGVSK---QVMELGTSNKADLDLQW 858
            E+                    L  V  L +  +S   K   Q +E+GTS++ D+D+ W
Sbjct: 205 GETIFMYMFLAGLG---------LLVVVGLHQLLESRKRKRPIQKVEMGTSSQNDVDMSW 255

Query: 859 IPAEHLKV--RQSPTISPRKRKSRR 927
           IP E L    + SP   PRKR  +R
Sbjct: 256 IPQETLNQINKASPRRQPRKRAQKR 280

>sp|P43307|SSRA_HUMAN Translocon-associated protein alpha subunit precursor (TRAP-alpha)
           (Signal sequence receptor alpha subunit) (SSR-alpha)
          Length = 286

 Score =  147 bits (371), Expect = 5e-35
 Identities = 91/260 (35%), Positives = 137/260 (52%), Gaps = 2/260 (0%)
 Frame = +1

Query: 154 DDSAAEEAEDKLNEDKIVTEILDSQQDQTEQTFIDGVPVASKNVQAELLFTEPPYNKRSS 333
           +DS  E+ +D+   ++   E  D  +D+ E+  + G P AS +    +LF +        
Sbjct: 43  EDSIIEDEDDEAEVEE--DEPTDLVEDKEEED-VSGEPEASPSADTTILFVK-------- 91

Query: 334 GVGIELPANKPVKMLISFTNTETETNKDYKLVHVEGFLRYPSDYSYYLQNFTARPLDITV 513
             G + PAN  VK L+ FTN  TE   D+ +  ++   RYP DY +Y+QNFTA PL+  V
Sbjct: 92  --GEDFPANNIVKFLVGFTNKGTE---DFIVESLDASFRYPQDYQFYIQNFTALPLNTVV 146

Query: 514 EPKREATVYYSFTPAQQLAGRPFGLTLRIAYHNNDGKMFTSTFFNDTVQVIEIEEGFDTE 693
            P+R+AT  YSF PA+ + GRPFGL + + Y + +G +F    FN TV VIE E+G D E
Sbjct: 147 PPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGE 206

Query: 694 SXXXXXXXXXXXXXXXXXXXHLFTVYALKKFKKSGVSKQVMELGTSNKADLDLQWIPAEH 873
           +                    +  ++ L + +K     Q +E+GTS++ D+D+ WIP E 
Sbjct: 207 TIFMYMFLAGLGLLV------IVGLHQLLESRKRKRPIQKVEMGTSSQNDVDMSWIPQET 260

Query: 874 LKV--RQSPTISPRKRKSRR 927
           L    + SP   PRKR  +R
Sbjct: 261 LNQINKASPRRLPRKRAQKR 280

>sp|Q5R4X4|SSRA_PONPY Translocon-associated protein alpha subunit precursor (TRAP-alpha)
           (Signal sequence receptor alpha subunit) (SSR-alpha)
          Length = 291

 Score =  146 bits (368), Expect = 1e-34
 Identities = 91/265 (34%), Positives = 138/265 (52%), Gaps = 7/265 (2%)
 Frame = +1

Query: 154 DDSAAEEAEDKLNEDKIVTEILDSQQDQTEQTFIDGVPVASKNVQAELLFTEPPYNKRSS 333
           +DS  E+ +D+   ++   E  D  +D+ E+  + G P AS +    +LF +        
Sbjct: 43  EDSIIEDEDDEAEVEE--DEPTDLVEDKEEED-VSGEPEASPSADTTILFVK-------- 91

Query: 334 GVGIELPANKPVKMLISFTNTETETNKDYKLVHVEGFLRYPSDYSYYLQNFTARPLDITV 513
             G + PAN  VK L+ FTN  TE   D+ +  ++   RYP DY +Y+QNFTA PL+  V
Sbjct: 92  --GEDFPANNIVKFLVGFTNKGTE---DFIVESLDASFRYPQDYQFYIQNFTALPLNTVV 146

Query: 514 EPKREATVYYSFTPAQQLAGRPFGLTLRIAYHNNDGKMFTSTFFNDTVQVIEIEEGFDTE 693
            P+R+AT  YSF PA+ + GRPFGL + + Y + +G +F    FN TV VIE E+G D E
Sbjct: 147 PPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGE 206

Query: 694 SXXXXXXXXXXXXXXXXXXXHLFTVYALKKFKKSGVSKQVMELGTSNKADLDLQWIPAEH 873
           +                    +  ++ L + +K     Q +E+GTS++ D+D+ WIP E 
Sbjct: 207 TIFMYMFLAGLGLLV------IVGLHQLLESRKRKRPVQKVEMGTSSQNDVDMSWIPQET 260

Query: 874 L-------KVRQSPTISPRKRKSRR 927
           L       + + SP   PRKR  +R
Sbjct: 261 LNQIMQSRRDKASPRRLPRKRAQKR 285

>sp|P53815|SSRA_RABIT Translocon-associated protein alpha subunit precursor (TRAP-alpha)
           (Signal sequence receptor alpha subunit) (SSR-alpha)
          Length = 286

 Score =  145 bits (366), Expect = 2e-34
 Identities = 92/263 (34%), Positives = 137/263 (52%), Gaps = 5/263 (1%)
 Frame = +1

Query: 154 DDSAAEEAEDKLNEDKIVTEILDSQQDQTEQTFIDGVPVASKNVQAELLFTEPPYNKRSS 333
           +DS  E+ +D+   ++   E  D  +D+ E+  + G P AS +    +LF +        
Sbjct: 43  EDSVIEDEDDEAEVEE--DEPTDLAEDREEED-VSGEPEASPSADTTILFVK-------- 91

Query: 334 GVGIELPANKPVKMLISFTNTETETNKDYKLVHVEGFLRYPSDYSYYLQNFTARPLDITV 513
             G + PAN  V+ L+ FTN  TE   D+ +  ++   RYP DY +Y+QNFTA PL+  V
Sbjct: 92  --GEDFPANNIVRFLVGFTNKGTE---DFIVESLDASFRYPQDYQFYIQNFTALPLNTIV 146

Query: 514 EPKREATVYYSFTPAQQLAGRPFGLTLRIAYHNNDGKMFTSTFFNDTVQVIEIEEGFDTE 693
            P+R+AT  YSF PA+ + GRPFGL + + Y + +G +F    FN TV VIE E+G D +
Sbjct: 147 PPQRQATFEYSFIPAEPMGGRPFGLVINLNYKDFNGNVFQDAVFNQTVTVIEREDGLDGQ 206

Query: 694 SXXXXXXXXXXXXXXXXXXXHLFTVYALKKFKKSGVSK---QVMELGTSNKADLDLQWIP 864
           +                    L  V  L +  +S   K   Q +E+GTS++ D+D+ WIP
Sbjct: 207 TIFMYMSLAGLG---------LLVVVGLHQLLESRNRKRPIQKVEMGTSSQNDVDMSWIP 257

Query: 865 AEHLKV--RQSPTISPRKRKSRR 927
            E L    + SP   PRKR  +R
Sbjct: 258 QETLNQINKASPRRLPRKRPQKR 280

>sp|Q7TPJ0|SSRA_RAT Translocon-associated protein alpha subunit precursor (TRAP-alpha)
           (Signal sequence receptor alpha subunit) (SSR-alpha)
           (Liver regeneration-related protein LRRG137)
          Length = 319

 Score =  138 bits (347), Expect = 3e-32
 Identities = 85/239 (35%), Positives = 124/239 (51%), Gaps = 3/239 (1%)
 Frame = +1

Query: 169 EEAEDKLNEDKIVTEILDSQQDQTEQTFIDGVPVASKNVQAELLFTEPPYNKRSSGVGIE 348
           E+ E ++ ED    E  D  +++ E+  +   P AS +    +LF +          G +
Sbjct: 50  EDDEAEVEED----EPTDLAEEKEEEEDVSSEPEASPSADTTILFVK----------GED 95

Query: 349 LPANKPVKMLISFTNTETETNKDYKLVHVEGFLRYPSDYSYYLQNFTARPLDITVEPKRE 528
            PAN  VK L+ FTN  TE   D+ +  ++   RYP DY +Y+QNFTA PL+  V P+R+
Sbjct: 96  FPANNIVKFLVGFTNKGTE---DFIVESLDASFRYPQDYQFYIQNFTALPLNTIVPPQRQ 152

Query: 529 ATVYYSFTPAQQLAGRPFGLTLRIAYHNNDGKMFTSTFFNDTVQVIEIEEGFDTESXXXX 708
           AT  YSF PA+ + GRPFGL + + Y + +G +F    FN TV VIE E+G D E+    
Sbjct: 153 ATFEYSFIPAEPMGGRPFGLVINLNYKDLNGNVFQDAVFNQTVTVIEREDGLDGETIFMY 212

Query: 709 XXXXXXXXXXXXXXXHLFTVYALKKFKKSGVSK---QVMELGTSNKADLDLQWIPAEHL 876
                           L  V  L +  +S   K   Q +E+GTS++ D+D+ WIP E L
Sbjct: 213 MFLAGLG---------LLVVVGLHQLLESRKRKRPIQKVEMGTSSQNDVDMSWIPQETL 262

>sp|P45433|SSRA_ONCMY Translocon-associated protein alpha subunit precursor (TRAP-alpha)
           (Signal sequence receptor alpha subunit) (SSR-alpha)
          Length = 288

 Score =  136 bits (342), Expect = 1e-31
 Identities = 82/263 (31%), Positives = 128/263 (48%), Gaps = 7/263 (2%)
 Frame = +1

Query: 157 DSAAEEAEDKLNEDKIVTEIL---DSQQDQTEQTFIDGVPVASKNVQAELLFTEPPYNKR 327
           DS  +E E++  ++ +V E        +D  ++    G   +  +    ++F        
Sbjct: 39  DSTVDEEEEEEEDEVLVEEDQVPGSETEDDIDEDAAVGDVTSHPDADTTIVFV------- 91

Query: 328 SSGVGIELPANKPVKMLISFTNTETETNKDYKLVHVEGFLRYPSDYSYYLQNFTARPLDI 507
               G E PAN+ VK L+ FTN   + ++D+ +  +E   RYP D+ +Y+QNFTA PL  
Sbjct: 92  ---TGEEFPANEIVKFLVGFTN---KGSQDFTVHSLEASFRYPQDFQFYIQNFTALPLST 145

Query: 508 TVEPKREATVYYSFTPAQQLAGRPFGLTLRIAYHNNDGKMFTSTFFNDTVQVIEIEEGFD 687
            V+P+++A+  YSF PAQ +AGRPFGL + + Y +++G  F +  +N TV ++E+EEG D
Sbjct: 146 VVQPQKQASFEYSFIPAQPMAGRPFGLVILLNYQDSEGNGFQTAIYNQTVTIVELEEGLD 205

Query: 688 TESXXXXXXXXXXXXXXXXXXXHLFTVYALKKFKKSGVSKQVMELGTSNKADLDLQWIPA 867
            E+                    +      K+F         +E GT     +D+ WIP 
Sbjct: 206 GETIFMYIFLTGLVVLAVFGMYQVLESRTRKRFPVK------VETGTGGMNGVDISWIPQ 259

Query: 868 EHL----KVRQSPTISPRKRKSR 924
           E L    K   SP  SPRKR  R
Sbjct: 260 ETLNIMSKASASPKASPRKRTKR 282

>sp|P45434|SSRA_ARATH Translocon-associated protein alpha subunit precursor (TRAP-alpha)
           (Signal sequence receptor alpha subunit) (SSR-alpha)
          Length = 258

 Score = 42.7 bits (99), Expect = 0.002
 Identities = 44/177 (24%), Positives = 74/177 (41%), Gaps = 3/177 (1%)
 Frame = +1

Query: 148 VTDDSAAEEAEDKLNEDKIVTEILDSQQDQTEQTF--IDGVPVASKNVQAELLFTEPPYN 321
           + DD   E  +D + ED       D   D    +F  ++ V V  KN  A+L+       
Sbjct: 34  LVDDVVGENTDDAVEED-------DHDLDMNLSSFPGVETVCVFPKN-SAKLV------- 78

Query: 322 KRSSGVGIELPANKPVKMLISFTNTETETNKDYKLVHVEGFLRYPSDYSYYLQNFTARPL 501
                     PA +  ++L+   N   E      ++ +   +  P D+   +QN T   L
Sbjct: 79  ----------PAGEETELLVGLKN---EGKTRVGVMGIRASVHLPYDHKLLVQNLTMLRL 125

Query: 502 D-ITVEPKREATVYYSFTPAQQLAGRPFGLTLRIAYHNNDGKMFTSTFFNDTVQVIE 669
           +  ++    +AT  Y F  +Q L    F L   I Y + +GK + S F+N T++V+E
Sbjct: 126 NNASIPTSLQATFPYIFAVSQYLQPGAFDLVGYIIY-DVEGKPYQSVFYNGTIEVVE 181

>sp|P32499|NUP2_YEAST Nucleoporin NUP2 (Nuclear pore protein NUP2) (p95)
          Length = 720

 Score = 32.7 bits (73), Expect = 1.7
 Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 11/102 (10%)
 Frame = +1

Query: 151 TDDSAAEEAEDKLNEDKIVTEILDSQQ--DQTEQTFIDGVPVASKNVQAELLFT---EPP 315
           T +S  E++ D  + +   +  + S+   D ++ +F  GVP +SKN  ++ +F+     P
Sbjct: 334 TSNSKPEKSSDSNDSNPSFSFSIPSKNTPDASKPSFSFGVPNSSKNETSKPVFSFGAATP 393

Query: 316 YNKRSS----GVGIELPANKPVKMLISFTNT--ETETNKDYK 423
             K +S       +E P++KP   LIS   T  E E+ KD K
Sbjct: 394 SAKEASQEDDNNNVEKPSSKPAFNLISNAGTEKEKESKKDSK 435

>sp|P50898|MIG1_KLULA Regulatory protein MIG1
          Length = 474

 Score = 31.6 bits (70), Expect = 3.7
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
 Frame = +1

Query: 220 DSQQDQTEQTFIDGVPVASKNVQAELLFTEPPYNKRSSGVGIELPANKPVKMLIS----- 384
           +S +  +   FID +P+ S +    L FT    N  SSG+ +  PA++     +S     
Sbjct: 199 ESDKASSSFKFIDKLPLTSSSSSPSLSFTSHSINNSSSGLLLPRPASRAKLSALSSLQRM 258

Query: 385 ---FTNTETETNKDYKLVHV 435
                N+E+  +    LVH+
Sbjct: 259 TPLSQNSESYNHSQQNLVHL 278

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,556,578
Number of Sequences: 369166
Number of extensions: 1784217
Number of successful extensions: 4338
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4321
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10622565690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00402

  1. Dr_sW_010_L22
  2. Dr_sW_023_F18