DrC_00396
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00396 (883 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q9K967|EX7L_BACHD Probable exodeoxyribonuclease VII larg... 40 0.009 sp|O88778|BSN_RAT Bassoon protein 37 0.073 sp|Q9UPA5|BSN_HUMAN Bassoon protein (Zinc-finger protein 231) 37 0.095 sp|Q9RX25|PCP_DEIRA Pyrrolidone-carboxylate peptidase (5-ox... 36 0.12 sp|O88737|BSN_MOUSE Bassoon protein 36 0.16 sp|P38616|YGP1_YEAST Protein YGP1 precursor (GP38) 36 0.16 sp|Q07283|TRHY_HUMAN Trichohyalin 35 0.21 sp|P23158|WH42_STRCO 42.8 kDa protein in whiE locus (WhiE O... 34 0.47 sp|Q9KRC8|MUKB_VIBCH Chromosome partition protein mukB (Str... 34 0.47 sp|O60941|DTNB_HUMAN Dystrobrevin beta (Beta-dystrobrevin) ... 34 0.62
>sp|Q9K967|EX7L_BACHD Probable exodeoxyribonuclease VII large subunit (Exonuclease VII large subunit) Length = 458 Score = 40.0 bits (92), Expect = 0.009 Identities = 36/143 (25%), Positives = 70/143 (48%), Gaps = 12/143 (8%) Frame = -2 Query: 417 GLPRRELPDLLDQRERVGTHGV----AQREL-RVSGQHRQEVQRVFVQHEPAELAQpreQ 253 G +PDL + RV + AQ EL + +H Q +Q+ + PA+L + +E Sbjct: 258 GAAELAVPDLKELISRVNQYTERLKRAQHELLKRQKEHLQRLQKSYAFRYPAQLVKQKEL 317 Query: 252 R--QSSARVSRFRL-----AADELQLVQIRICRVHPVERLQEVQIRRLVVRLEQSRQNAH 94 Q R+++ + A D L ++ R+ R+HP RL++ + R+ + + ++ Sbjct: 318 ELDQQLERLTKHQRRMVSDAKDRLSQLEYRLKRIHPEGRLRQAEQARVKLEVLLKKEFQQ 377 Query: 93 LQVDRDQQRIEQAAAIPIPRSPL 25 + ++R +Q+ +QA + SPL Sbjct: 378 M-MERKEQQFQQAISSLNLLSPL 399
>sp|O88778|BSN_RAT Bassoon protein Length = 3938 Score = 37.0 bits (84), Expect = 0.073 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 16/119 (13%) Frame = -2 Query: 441 EQQRRGARGLPRRELPDLLD-QRERVGTHGVAQREL-------RVSGQHRQEVQRVFVQH 286 E++ R++ LL +RERV + Q L RV Q +E +++ VQ Sbjct: 2349 EKEEASQEDRQRKQQEQLLQLERERVELEKLRQLRLQEELERERVELQRHREEEQLLVQR 2408 Query: 285 EPAELA--------QpreQRQSSARVSRFRLAADELQLVQIRICRVHPVERLQEVQIRR 133 E EL Q +E+RQ+ + R +LA LQL QI+ + ++L+E + R+ Sbjct: 2409 ELQELQTIKHHVLQQQQEERQAQFALQREQLAQQRLQLEQIQQLQQQLQQQLEEQKQRQ 2467
>sp|Q9UPA5|BSN_HUMAN Bassoon protein (Zinc-finger protein 231) Length = 3926 Score = 36.6 bits (83), Expect = 0.095 Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 16/119 (13%) Frame = -2 Query: 441 EQQRRGARGLPRRELPDLLD-QRERVGTHGVAQREL-------RVSGQHRQEVQRVFVQH 286 E++ R++ LL +RERV + Q L RV Q +E +++ VQ Sbjct: 2355 EKEEASQEERQRKQQEQLLQLERERVELEKLRQLRLQEELERERVELQRHREEEQLLVQR 2414 Query: 285 EPAELA--------QpreQRQSSARVSRFRLAADELQLVQIRICRVHPVERLQEVQIRR 133 E EL Q +E+RQ+ + R +LA LQL QI+ + ++L+E + R+ Sbjct: 2415 ELQELQTIKHHVLQQQQEERQAQFALQREQLAQQRLQLEQIQQLQQQLQQQLEEQKQRQ 2473
>sp|Q9RX25|PCP_DEIRA Pyrrolidone-carboxylate peptidase (5-oxoprolyl-peptidase) (Pyroglutamyl-peptidase I) (PGP-I) (Pyrase) Length = 218 Score = 36.2 bits (82), Expect = 0.12 Identities = 28/76 (36%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Frame = +3 Query: 318 GAVQTLAARAGRpreS-RRVPAGREDPAVRGEAGPVHRDAAVRHDPAGAPVRGPGLRAAL 494 GAV AGRP+ + RV G D + AG +RD + D A + LRA L Sbjct: 64 GAVLLTGLAAGRPQVTLERVGVGVMDFQIPDNAGQTYRDQPIEPDAPAAYLATLPLRAIL 123 Query: 495 HSRGAADRHAELPADL 542 AA R AE+P D+ Sbjct: 124 ----AAWREAEIPGDI 135
>sp|O88737|BSN_MOUSE Bassoon protein Length = 3942 Score = 35.8 bits (81), Expect = 0.16 Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 16/129 (12%) Frame = -2 Query: 441 EQQRRGARGLPRRELPDLLD-QRERVGTHGVAQREL-------RVSGQHRQEVQRVFVQH 286 E++ R++ LL +RERV + Q L RV Q +E +++ VQ Sbjct: 2363 EKEEASQEDRQRKQQEQLLQLERERVELEKLRQLRLQEELERERVELQRHREEEQLLVQR 2422 Query: 285 EPAELA--------QpreQRQSSARVSRFRLAADELQLVQIRICRVHPVERLQEVQIRRL 130 E EL Q +E+RQ+ + R +LA LQL E++Q++Q ++L Sbjct: 2423 ELQELQTIKQHVLQQQQEERQAQFALQREQLAQQRLQL-----------EQIQQLQ-QQL 2470 Query: 129 VVRLEQSRQ 103 ++LE+ +Q Sbjct: 2471 QLQLEEQKQ 2479
>sp|P38616|YGP1_YEAST Protein YGP1 precursor (GP38) Length = 354 Score = 35.8 bits (81), Expect = 0.16 Identities = 22/70 (31%), Positives = 39/70 (55%) Frame = +1 Query: 526 NYQQIFSTATTPLNQDELYLTVSLVREKIDNEQRKIAHLVQNGPNLQSISYFVCKIEFGI 705 NY ++F++++ LN ELY +V E I ++ A +V N +L+++S+F Sbjct: 94 NYTRLFNSSSA-LNITELYNVARVVNETIQDKSSAGAVVVANAKSLEAVSFF-------- 144 Query: 706 YFSLIFGSSK 735 FS+IF + K Sbjct: 145 -FSIIFDTEK 153
>sp|Q07283|TRHY_HUMAN Trichohyalin Length = 1898 Score = 35.4 bits (80), Expect = 0.21 Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 12/137 (8%) Frame = -2 Query: 441 EQQRRGAR-GLPRRELPDLLDQRERVGTHGVAQRELRVSGQHRQEVQRVFVQHEPAELAQ 265 EQ+RR R + E D L + E H +R+ ++ +E + +++ E E + Sbjct: 458 EQERREQRLKREQEERRDWLKREEETERHEQERRKQQLKRDQEEERRERWLKLEEEERRE 517 Query: 264 preQR-------QSSARVSRFRLAADELQLVQI----RICRVHPVERLQEVQIRRLVVRL 118 +E+R Q R R + +E +L Q + R ERL+++ R RL Sbjct: 518 QQERREQQLRREQEERREQRLKRQEEEERLQQRLRSEQQLRREQEERLEQLLKREEEKRL 577 Query: 117 EQSRQNAHLQVDRDQQR 67 EQ R+ L+ +++++R Sbjct: 578 EQERREQRLKREQEERR 594
Score = 34.7 bits (78), Expect = 0.36
Identities = 47/158 (29%), Positives = 68/158 (43%), Gaps = 6/158 (3%)
Frame = -2
Query: 516 DQRLRASEGQXXXXXXXXXXXXXXVEQQRRGARGLPRRELPDLLDQRERVGTHGVAQREL 337
+Q+LR EGQ +Q R+ R RE LL +RE +++L
Sbjct: 1557 EQQLRRQEGQ---------------QQLRQEDRKF--REDEQLLQERE--------EQQL 1591
Query: 336 RVSGQHRQEVQRVFVQHEPAELAQpreQRQSSARVSRFRLAADELQLV------QIRICR 175
HRQE R F++ EP Q REQ+ R +FR +E QL+ Q+R
Sbjct: 1592 -----HRQERDRKFLEEEPQLRRQEREQQLRHDRDRKFR---EEEQLLQEGEEQQLRRQE 1643
Query: 174 VHPVERLQEVQIRRLVVRLEQSRQNAHLQVDRDQQRIE 61
R +E Q+RR Q R+ LQ ++ +R E
Sbjct: 1644 RDRKFREEEQQLRR------QERERKFLQEEQQLRRQE 1675
Score = 30.8 bits (68), Expect = 5.2
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Frame = -2
Query: 321 HRQEVQRVFVQHEPAELAQpreQRQSSARVSRFRLAADELQLVQIR----ICRVHPVE-- 160
HRQ+ QR F+Q E Q R Q++ R +FR +E QL Q R + R
Sbjct: 1481 HRQQRQRKFLQEEQQLRRQERGQQRRQDRDRKFR---EEEQLRQEREEQQLSRQERDRKF 1537
Query: 159 RLQEVQIRRLVVRLEQSRQNAHLQVDRDQQRIEQ 58
RL+E ++RR + L+ QQ++ Q
Sbjct: 1538 RLEEQKVRRQEQERKFMEDEQQLRRQEGQQQLRQ 1571
>sp|P23158|WH42_STRCO 42.8 kDa protein in whiE locus (WhiE ORF I) Length = 397 Score = 34.3 bits (77), Expect = 0.47 Identities = 32/89 (35%), Positives = 37/89 (41%), Gaps = 8/89 (8%) Frame = +3 Query: 342 RAGRpreSRRVPAGREDPAVRGEAGPV------HRDAAVRH--DPAGAPVRGPGLRAALH 497 R G + R+ A ++ A R GPV HRD V D G P P LH Sbjct: 290 RDGAGPDLARLLARQDAAAARNPDGPVLAATVFHRDDLVVRLVDVDGDPEDAPAEVLGLH 349 Query: 498 SRGAADRHAELPADLLHRDHSP*PR*TLS 584 RGAAD L A + D SP TLS Sbjct: 350 GRGAADAERLLDAAAVGVDGSPAEAATLS 378
>sp|Q9KRC8|MUKB_VIBCH Chromosome partition protein mukB (Structural maintenance of chromosome related protein) Length = 1491 Score = 34.3 bits (77), Expect = 0.47 Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 1/111 (0%) Frame = -2 Query: 384 DQRERVGTHGVAQRELRVSGQHRQEVQRVFVQ-HEPAELAQpreQRQSSARVSRFRLAAD 208 D+R +VG V + EL S + E + + HE EL +E SA ++ A+D Sbjct: 280 DRRNKVGQTLVLRGELFSSRETLIEQNSLLNRVHEELELLVEQE----SALEQDYQGASD 335 Query: 207 ELQLVQIRICRVHPVERLQEVQIRRLVVRLEQSRQNAHLQVDRDQQRIEQA 55 LQLVQ + + +ER QE + L RLE+ + V+ +R+ QA Sbjct: 336 HLQLVQNALRQQEKIERYQE-DLEELNFRLEEQM----MVVEEANERVMQA 381
>sp|O60941|DTNB_HUMAN Dystrobrevin beta (Beta-dystrobrevin) (DTN-B) Length = 627 Score = 33.9 bits (76), Expect = 0.62 Identities = 19/76 (25%), Positives = 36/76 (47%) Frame = -2 Query: 315 QEVQRVFVQHEPAELAQpreQRQSSARVSRFRLAADELQLVQIRICRVHPVERLQEVQIR 136 QE+QR+ ++HE A P + +Q+ ++ RL ++ R+ + R VQ+ Sbjct: 452 QEIQRLRLEHEQASQPTPEKAQQNPTLLAELRLLRQRKDELEQRMSALQESRRELMVQLE 511 Query: 135 RLVVRLEQSRQNAHLQ 88 L+ L++ Q Q Sbjct: 512 ELMKLLKEEEQKQAAQ 527
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,463,770
Number of Sequences: 369166
Number of extensions: 1845042
Number of successful extensions: 6872
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6854
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8790245790
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
