Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_004_I02
(410 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P38616|YGP1_YEAST Protein YGP1 precursor (GP38) 36 0.034
sp|Q9X8N8|NADB_STRCO L-aspartate oxidase (LASPO) (Quinolina... 28 5.5
sp|P09333|SLAPO_BREBE Outer cell wall protein precursor (OWP) 28 7.1
sp|Q8RI57|Y1762_FUSNN Hypothetical UPF0246 protein FN1762 28 7.1
sp|Q5TGI0|CF168_HUMAN Protein C6orf168 28 9.3
sp|P12626|ANFA_AZOVI Nitrogen fixation protein anfA 28 9.3
sp|Q6ABL5|DNAA_PROAC Chromosomal replication initiator prot... 28 9.3
sp|Q9VJE5|CL190_DROME Restin homolog (Cytoplasmic linker pr... 28 9.3
sp|P51104|DFRA_DIACA Dihydroflavonol-4-reductase (DFR) (Dih... 28 9.3
sp|Q9Y4A5|TRRAP_HUMAN Transformation/transcription domain-a... 28 9.3
>sp|P38616|YGP1_YEAST Protein YGP1 precursor (GP38)
Length = 354
Score = 35.8 bits (81), Expect = 0.034
Identities = 22/70 (31%), Positives = 39/70 (55%)
Frame = +2
Query: 53 NYQQIFSTATTPLNQDELYLTVSLVREKIDNEQRKIAHLVQNGPNLQSISYFVCKIEFGI 232
NY ++F++++ LN ELY +V E I ++ A +V N +L+++S+F
Sbjct: 94 NYTRLFNSSSA-LNITELYNVARVVNETIQDKSSAGAVVVANAKSLEAVSFF-------- 144
Query: 233 YFSLIFGSSK 262
FS+IF + K
Sbjct: 145 -FSIIFDTEK 153
>sp|Q9X8N8|NADB_STRCO L-aspartate oxidase (LASPO) (Quinolinate synthetase B)
Length = 580
Score = 28.5 bits (62), Expect = 5.5
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +1
Query: 13 AALHSRGAADRHAELPADLLHRDHSP*PR 99
AA H+ G HA +PA L H DHS PR
Sbjct: 414 AAAHTAGTL--HARVPAPLPHPDHSQHPR 440
>sp|P09333|SLAPO_BREBE Outer cell wall protein precursor (OWP)
Length = 1004
Score = 28.1 bits (61), Expect = 7.1
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 5 GYALPFTRAEPLIGMQNYQQIFSTATTPLNQDELYLTVSLVREKIDNE 148
G +P T+AE + +N ++ +T PLN YLTV + + N+
Sbjct: 456 GNVIPLTKAEVVDAAKNIYKVVTTE--PLNGGSYYLTVKGIEDASKNK 501
>sp|Q8RI57|Y1762_FUSNN Hypothetical UPF0246 protein FN1762
Length = 248
Score = 28.1 bits (61), Expect = 7.1
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +3
Query: 207 SFVKLNLEYISHLFLGQAKMKKTGRHYLLSMIYALSYKDLELSNYSDSN 353
+ +KL E +++ + K +SM Y +S+K+LEL +YS+ +
Sbjct: 50 NIMKLKGELLNNTYKDIQNYDKLKYIPAISMYYGVSFKELELEDYSEKS 98
>sp|Q5TGI0|CF168_HUMAN Protein C6orf168
Length = 409
Score = 27.7 bits (60), Expect = 9.3
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +2
Query: 56 YQQIFSTATTPLNQDELYLTVSLVREKIDN--EQRKIAHLVQNGPNLQSISYFVCKIEFG 229
+++ S A T + ++ Y T++ + +DN E RK+ L GP + + VC I G
Sbjct: 182 HERAISRAVTKMVEEHFYWTLAYC-QWVDNLNETRKMLSLSGGGPFSNLLRWVVCHITKG 240
Query: 230 I 232
I
Sbjct: 241 I 241
>sp|P12626|ANFA_AZOVI Nitrogen fixation protein anfA
Length = 533
Score = 27.7 bits (60), Expect = 9.3
Identities = 23/109 (21%), Positives = 45/109 (41%), Gaps = 25/109 (22%)
Frame = +2
Query: 8 YALPFTRAEPLIGMQNYQQIFSTATTPLNQD---------------ELYLTVSLVREKID 142
+ +P RA+ ++G ++++ L QD ELYL ++ R +++
Sbjct: 142 FCVPIMRAQKVLGTIAAERVYMNPRL-LKQDVELLTMIATMIAPLVELYLIENIERVRLE 200
Query: 143 NEQRKIAH----------LVQNGPNLQSISYFVCKIEFGIYFSLIFGSS 259
NE R++ H ++ N +Q + + K+ LI G S
Sbjct: 201 NENRRLKHALKERFKPSNIIGNSKPMQEVYELIHKVASTKATVLILGES 249
>sp|Q6ABL5|DNAA_PROAC Chromosomal replication initiator protein dnaA
Length = 500
Score = 27.7 bits (60), Expect = 9.3
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = -2
Query: 88 GSGRGGEDLLVVLHADQRLRASEGQR 11
G+ GG+D V+HAD+++RA G++
Sbjct: 458 GAEFGGKDHTTVMHADRKIRALMGEQ 483
>sp|Q9VJE5|CL190_DROME Restin homolog (Cytoplasmic linker protein 190) (Microtubule
binding protein 190) (d-CLIP-190)
Length = 1690
Score = 27.7 bits (60), Expect = 9.3
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 98 DELYLTVSLVREKIDNEQRKIAHLVQNGPNLQSI 199
DEL + +EKI + + KI LV P+LQSI
Sbjct: 441 DELNAQSQVYKEKIHDLESKITKLVSATPSLQSI 474
>sp|P51104|DFRA_DIACA Dihydroflavonol-4-reductase (DFR) (Dihydrokaempferol 4-reductase)
Length = 360
Score = 27.7 bits (60), Expect = 9.3
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 8/45 (17%)
Frame = -3
Query: 306 HISLIK-------DNVCLSFSFLLD-PKISEKYIPNSILQTKYDI 196
H ++IK D++C+S FL + PK + +YI ++ T YDI
Sbjct: 235 HYTIIKQGQFVHLDDLCMSHIFLYENPKANGRYIASACAATIYDI 279
>sp|Q9Y4A5|TRRAP_HUMAN Transformation/transcription domain-associated protein (350/400 kDa
PCAF-associated factor) (PAF350/400) (STAF40) (Tra1
homolog)
Length = 3859
Score = 27.7 bits (60), Expect = 9.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 318 CNSVHISLIKDNVCLSFSFLLDPKISEKYIPNSILQTKY 202
C V + ++DN + L P +EK IPN I+ +Y
Sbjct: 969 CFLVAMMSLEDNKHALYQLLAHPNFTEKTIPNVIISHRY 1007
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,455,702
Number of Sequences: 369166
Number of extensions: 716389
Number of successful extensions: 1722
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1722
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 1852449955
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)