Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_K15
(883 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9K967|EX7L_BACHD Probable exodeoxyribonuclease VII larg... 40 0.009
sp|O88778|BSN_RAT Bassoon protein 37 0.073
sp|Q9UPA5|BSN_HUMAN Bassoon protein (Zinc-finger protein 231) 37 0.095
sp|Q9RX25|PCP_DEIRA Pyrrolidone-carboxylate peptidase (5-ox... 36 0.12
sp|O88737|BSN_MOUSE Bassoon protein 36 0.16
sp|P38616|YGP1_YEAST Protein YGP1 precursor (GP38) 36 0.16
sp|Q07283|TRHY_HUMAN Trichohyalin 35 0.21
sp|P23158|WH42_STRCO 42.8 kDa protein in whiE locus (WhiE O... 34 0.47
sp|Q9KRC8|MUKB_VIBCH Chromosome partition protein mukB (Str... 34 0.47
sp|O60941|DTNB_HUMAN Dystrobrevin beta (Beta-dystrobrevin) ... 34 0.62
>sp|Q9K967|EX7L_BACHD Probable exodeoxyribonuclease VII large subunit (Exonuclease VII
large subunit)
Length = 458
Score = 40.0 bits (92), Expect = 0.009
Identities = 36/143 (25%), Positives = 70/143 (48%), Gaps = 12/143 (8%)
Frame = -2
Query: 417 GLPRRELPDLLDQRERVGTHGV----AQREL-RVSGQHRQEVQRVFVQHEPAELAQpreQ 253
G +PDL + RV + AQ EL + +H Q +Q+ + PA+L + +E
Sbjct: 258 GAAELAVPDLKELISRVNQYTERLKRAQHELLKRQKEHLQRLQKSYAFRYPAQLVKQKEL 317
Query: 252 R--QSSARVSRFRL-----AADELQLVQIRICRVHPVERLQEVQIRRLVVRLEQSRQNAH 94
Q R+++ + A D L ++ R+ R+HP RL++ + R+ + + ++
Sbjct: 318 ELDQQLERLTKHQRRMVSDAKDRLSQLEYRLKRIHPEGRLRQAEQARVKLEVLLKKEFQQ 377
Query: 93 LQVDRDQQRIEQAAAIPIPRSPL 25
+ ++R +Q+ +QA + SPL
Sbjct: 378 M-MERKEQQFQQAISSLNLLSPL 399
>sp|O88778|BSN_RAT Bassoon protein
Length = 3938
Score = 37.0 bits (84), Expect = 0.073
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 16/119 (13%)
Frame = -2
Query: 441 EQQRRGARGLPRRELPDLLD-QRERVGTHGVAQREL-------RVSGQHRQEVQRVFVQH 286
E++ R++ LL +RERV + Q L RV Q +E +++ VQ
Sbjct: 2349 EKEEASQEDRQRKQQEQLLQLERERVELEKLRQLRLQEELERERVELQRHREEEQLLVQR 2408
Query: 285 EPAELA--------QpreQRQSSARVSRFRLAADELQLVQIRICRVHPVERLQEVQIRR 133
E EL Q +E+RQ+ + R +LA LQL QI+ + ++L+E + R+
Sbjct: 2409 ELQELQTIKHHVLQQQQEERQAQFALQREQLAQQRLQLEQIQQLQQQLQQQLEEQKQRQ 2467
>sp|Q9UPA5|BSN_HUMAN Bassoon protein (Zinc-finger protein 231)
Length = 3926
Score = 36.6 bits (83), Expect = 0.095
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 16/119 (13%)
Frame = -2
Query: 441 EQQRRGARGLPRRELPDLLD-QRERVGTHGVAQREL-------RVSGQHRQEVQRVFVQH 286
E++ R++ LL +RERV + Q L RV Q +E +++ VQ
Sbjct: 2355 EKEEASQEERQRKQQEQLLQLERERVELEKLRQLRLQEELERERVELQRHREEEQLLVQR 2414
Query: 285 EPAELA--------QpreQRQSSARVSRFRLAADELQLVQIRICRVHPVERLQEVQIRR 133
E EL Q +E+RQ+ + R +LA LQL QI+ + ++L+E + R+
Sbjct: 2415 ELQELQTIKHHVLQQQQEERQAQFALQREQLAQQRLQLEQIQQLQQQLQQQLEEQKQRQ 2473
>sp|Q9RX25|PCP_DEIRA Pyrrolidone-carboxylate peptidase (5-oxoprolyl-peptidase)
(Pyroglutamyl-peptidase I) (PGP-I) (Pyrase)
Length = 218
Score = 36.2 bits (82), Expect = 0.12
Identities = 28/76 (36%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Frame = +3
Query: 318 GAVQTLAARAGRpreS-RRVPAGREDPAVRGEAGPVHRDAAVRHDPAGAPVRGPGLRAAL 494
GAV AGRP+ + RV G D + AG +RD + D A + LRA L
Sbjct: 64 GAVLLTGLAAGRPQVTLERVGVGVMDFQIPDNAGQTYRDQPIEPDAPAAYLATLPLRAIL 123
Query: 495 HSRGAADRHAELPADL 542
AA R AE+P D+
Sbjct: 124 ----AAWREAEIPGDI 135
>sp|O88737|BSN_MOUSE Bassoon protein
Length = 3942
Score = 35.8 bits (81), Expect = 0.16
Identities = 36/129 (27%), Positives = 61/129 (47%), Gaps = 16/129 (12%)
Frame = -2
Query: 441 EQQRRGARGLPRRELPDLLD-QRERVGTHGVAQREL-------RVSGQHRQEVQRVFVQH 286
E++ R++ LL +RERV + Q L RV Q +E +++ VQ
Sbjct: 2363 EKEEASQEDRQRKQQEQLLQLERERVELEKLRQLRLQEELERERVELQRHREEEQLLVQR 2422
Query: 285 EPAELA--------QpreQRQSSARVSRFRLAADELQLVQIRICRVHPVERLQEVQIRRL 130
E EL Q +E+RQ+ + R +LA LQL E++Q++Q ++L
Sbjct: 2423 ELQELQTIKQHVLQQQQEERQAQFALQREQLAQQRLQL-----------EQIQQLQ-QQL 2470
Query: 129 VVRLEQSRQ 103
++LE+ +Q
Sbjct: 2471 QLQLEEQKQ 2479
>sp|P38616|YGP1_YEAST Protein YGP1 precursor (GP38)
Length = 354
Score = 35.8 bits (81), Expect = 0.16
Identities = 22/70 (31%), Positives = 39/70 (55%)
Frame = +1
Query: 526 NYQQIFSTATTPLNQDELYLTVSLVREKIDNEQRKIAHLVQNGPNLQSISYFVCKIEFGI 705
NY ++F++++ LN ELY +V E I ++ A +V N +L+++S+F
Sbjct: 94 NYTRLFNSSSA-LNITELYNVARVVNETIQDKSSAGAVVVANAKSLEAVSFF-------- 144
Query: 706 YFSLIFGSSK 735
FS+IF + K
Sbjct: 145 -FSIIFDTEK 153
>sp|Q07283|TRHY_HUMAN Trichohyalin
Length = 1898
Score = 35.4 bits (80), Expect = 0.21
Identities = 34/137 (24%), Positives = 63/137 (45%), Gaps = 12/137 (8%)
Frame = -2
Query: 441 EQQRRGAR-GLPRRELPDLLDQRERVGTHGVAQRELRVSGQHRQEVQRVFVQHEPAELAQ 265
EQ+RR R + E D L + E H +R+ ++ +E + +++ E E +
Sbjct: 458 EQERREQRLKREQEERRDWLKREEETERHEQERRKQQLKRDQEEERRERWLKLEEEERRE 517
Query: 264 preQR-------QSSARVSRFRLAADELQLVQI----RICRVHPVERLQEVQIRRLVVRL 118
+E+R Q R R + +E +L Q + R ERL+++ R RL
Sbjct: 518 QQERREQQLRREQEERREQRLKRQEEEERLQQRLRSEQQLRREQEERLEQLLKREEEKRL 577
Query: 117 EQSRQNAHLQVDRDQQR 67
EQ R+ L+ +++++R
Sbjct: 578 EQERREQRLKREQEERR 594
Score = 34.7 bits (78), Expect = 0.36
Identities = 47/158 (29%), Positives = 68/158 (43%), Gaps = 6/158 (3%)
Frame = -2
Query: 516 DQRLRASEGQXXXXXXXXXXXXXXVEQQRRGARGLPRRELPDLLDQRERVGTHGVAQREL 337
+Q+LR EGQ +Q R+ R RE LL +RE +++L
Sbjct: 1557 EQQLRRQEGQ---------------QQLRQEDRKF--REDEQLLQERE--------EQQL 1591
Query: 336 RVSGQHRQEVQRVFVQHEPAELAQpreQRQSSARVSRFRLAADELQLV------QIRICR 175
HRQE R F++ EP Q REQ+ R +FR +E QL+ Q+R
Sbjct: 1592 -----HRQERDRKFLEEEPQLRRQEREQQLRHDRDRKFR---EEEQLLQEGEEQQLRRQE 1643
Query: 174 VHPVERLQEVQIRRLVVRLEQSRQNAHLQVDRDQQRIE 61
R +E Q+RR Q R+ LQ ++ +R E
Sbjct: 1644 RDRKFREEEQQLRR------QERERKFLQEEQQLRRQE 1675
Score = 30.8 bits (68), Expect = 5.2
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Frame = -2
Query: 321 HRQEVQRVFVQHEPAELAQpreQRQSSARVSRFRLAADELQLVQIR----ICRVHPVE-- 160
HRQ+ QR F+Q E Q R Q++ R +FR +E QL Q R + R
Sbjct: 1481 HRQQRQRKFLQEEQQLRRQERGQQRRQDRDRKFR---EEEQLRQEREEQQLSRQERDRKF 1537
Query: 159 RLQEVQIRRLVVRLEQSRQNAHLQVDRDQQRIEQ 58
RL+E ++RR + L+ QQ++ Q
Sbjct: 1538 RLEEQKVRRQEQERKFMEDEQQLRRQEGQQQLRQ 1571
>sp|P23158|WH42_STRCO 42.8 kDa protein in whiE locus (WhiE ORF I)
Length = 397
Score = 34.3 bits (77), Expect = 0.47
Identities = 32/89 (35%), Positives = 37/89 (41%), Gaps = 8/89 (8%)
Frame = +3
Query: 342 RAGRpreSRRVPAGREDPAVRGEAGPV------HRDAAVRH--DPAGAPVRGPGLRAALH 497
R G + R+ A ++ A R GPV HRD V D G P P LH
Sbjct: 290 RDGAGPDLARLLARQDAAAARNPDGPVLAATVFHRDDLVVRLVDVDGDPEDAPAEVLGLH 349
Query: 498 SRGAADRHAELPADLLHRDHSP*PR*TLS 584
RGAAD L A + D SP TLS
Sbjct: 350 GRGAADAERLLDAAAVGVDGSPAEAATLS 378
>sp|Q9KRC8|MUKB_VIBCH Chromosome partition protein mukB (Structural maintenance of
chromosome related protein)
Length = 1491
Score = 34.3 bits (77), Expect = 0.47
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 1/111 (0%)
Frame = -2
Query: 384 DQRERVGTHGVAQRELRVSGQHRQEVQRVFVQ-HEPAELAQpreQRQSSARVSRFRLAAD 208
D+R +VG V + EL S + E + + HE EL +E SA ++ A+D
Sbjct: 280 DRRNKVGQTLVLRGELFSSRETLIEQNSLLNRVHEELELLVEQE----SALEQDYQGASD 335
Query: 207 ELQLVQIRICRVHPVERLQEVQIRRLVVRLEQSRQNAHLQVDRDQQRIEQA 55
LQLVQ + + +ER QE + L RLE+ + V+ +R+ QA
Sbjct: 336 HLQLVQNALRQQEKIERYQE-DLEELNFRLEEQM----MVVEEANERVMQA 381
>sp|O60941|DTNB_HUMAN Dystrobrevin beta (Beta-dystrobrevin) (DTN-B)
Length = 627
Score = 33.9 bits (76), Expect = 0.62
Identities = 19/76 (25%), Positives = 36/76 (47%)
Frame = -2
Query: 315 QEVQRVFVQHEPAELAQpreQRQSSARVSRFRLAADELQLVQIRICRVHPVERLQEVQIR 136
QE+QR+ ++HE A P + +Q+ ++ RL ++ R+ + R VQ+
Sbjct: 452 QEIQRLRLEHEQASQPTPEKAQQNPTLLAELRLLRQRKDELEQRMSALQESRRELMVQLE 511
Query: 135 RLVVRLEQSRQNAHLQ 88
L+ L++ Q Q
Sbjct: 512 ELMKLLKEEEQKQAAQ 527
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,463,770
Number of Sequences: 369166
Number of extensions: 1845042
Number of successful extensions: 6872
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6854
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8790245790
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)