Planaria EST Database

DrC_00395

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00395
         (1050 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P18395|CSDE1_RAT  Cold shock domain protein E1 (UNR protein)    60   8e-09
sp|Q91W50|CSDE1_MOUSE  Cold shock domain protein E1                60   8e-09
sp|O75534|CSDE1_HUMAN  Cold shock domain protein E1 (UNR pro...    60   8e-09
sp|Q7G191|ALDO4_ARATH  Aldehyde oxidase 4 (AtAO-4) (AtAO2)         34   0.80 
sp|P38809|YHP7_YEAST  Hypothetical 40.7 kDa protein in HXT5-...    33   1.0  
sp|Q9HAU0|PLEA5_HUMAN  Pleckstrin homology domain-containing...    33   1.0  
sp|Q63ZW7|INADL_MOUSE  InaD-like protein (Inadl protein) (Pa...    33   1.8  
sp|P62634|CNBP_RAT  Cellular nucleic acid binding protein (C...    31   5.2  
sp|O94685|UCP8_SCHPO  UBA-domain containing protein 8              31   5.2  
sp|Q660Y4|EFG1_BORGA  Elongation factor G 1 (EF-G 1)               30   8.8  

>sp|P18395|CSDE1_RAT Cold shock domain protein E1 (UNR protein)
          Length = 798

 Score = 60.5 bits (145), Expect = 8e-09
 Identities = 28/69 (40%), Positives = 43/69 (62%)
 Frame = +2

Query: 53  QIPFGEKDKKYQYTLHPGDNVAFKIAIDRRDQLQRACQVELFLSSFPSRKETRHIGVVKM 232
           ++PFG+KD K + TL  GD+V F I+ DRRD+L+RA  +E+  ++F    E R +GV+  
Sbjct: 296 ELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAA 355

Query: 233 FDGSAGLIE 259
                G I+
Sbjct: 356 MRDGFGFIK 364

>sp|Q91W50|CSDE1_MOUSE Cold shock domain protein E1
          Length = 798

 Score = 60.5 bits (145), Expect = 8e-09
 Identities = 28/69 (40%), Positives = 43/69 (62%)
 Frame = +2

Query: 53  QIPFGEKDKKYQYTLHPGDNVAFKIAIDRRDQLQRACQVELFLSSFPSRKETRHIGVVKM 232
           ++PFG+KD K + TL  GD+V F I+ DRRD+L+RA  +E+  ++F    E R +GV+  
Sbjct: 296 ELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAA 355

Query: 233 FDGSAGLIE 259
                G I+
Sbjct: 356 MRDGFGFIK 364

>sp|O75534|CSDE1_HUMAN Cold shock domain protein E1 (UNR protein) (N-ras upstream gene
           protein)
          Length = 798

 Score = 60.5 bits (145), Expect = 8e-09
 Identities = 28/69 (40%), Positives = 43/69 (62%)
 Frame = +2

Query: 53  QIPFGEKDKKYQYTLHPGDNVAFKIAIDRRDQLQRACQVELFLSSFPSRKETRHIGVVKM 232
           ++PFG+KD K + TL  GD+V F I+ DRRD+L+RA  +E+  ++F    E R +GV+  
Sbjct: 296 ELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAA 355

Query: 233 FDGSAGLIE 259
                G I+
Sbjct: 356 MRDGFGFIK 364

>sp|Q7G191|ALDO4_ARATH Aldehyde oxidase 4 (AtAO-4) (AtAO2)
          Length = 1337

 Score = 33.9 bits (76), Expect = 0.80
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
 Frame = +2

Query: 284  QDMLVSFKAKEW--LSTDSKLTKFAVVSYTPLQVSKNVGGQQKLTYTALRIMPS------ 439
            Q+++ S +  +W  LS D K+ K  + S T L+    V G    +Y A  I+ +      
Sbjct: 883  QNIMNSLRKYDWGALSFDIKVCKTNLPSRTSLRAPGEVQG----SYIAESIIENVASSLK 938

Query: 440  KDIDKMLHLKLYPARSLRGFVKTAANLPDD 529
             D+D +  + L+   SLR F K AA  PD+
Sbjct: 939  MDVDVVRRINLHTYESLRKFYKQAAGEPDE 968

>sp|P38809|YHP7_YEAST Hypothetical 40.7 kDa protein in HXT5-NRK1 intergenic region
          Length = 366

 Score = 33.5 bits (75), Expect = 1.0
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +2

Query: 725 SSVNNSSYSKHPSEGHRSSEARKIRSRTLPGEKITPPSIIDTHSNHQSTGI 877
           S  +N  + +  S GHR  + +K +SRT    K+ PP  +DT      TG+
Sbjct: 95  SHQHNHHHHRRTSHGHRDKDKQKSKSRT----KVKPPKNVDTIDKMDVTGL 141

>sp|Q9HAU0|PLEA5_HUMAN Pleckstrin homology domain-containing protein family A member 5
            (Phosphoinositol 3-phosphate-binding protein 2) (PEPP-2)
          Length = 1116

 Score = 33.5 bits (75), Expect = 1.0
 Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = +1

Query: 796  TLSNSSGRENNSSKYHRYS*QPPIDGNNSNKQLS-IEKSSWMDCDTEEYFGFVETADHSA 972
            T  N+  +E N+   HR   +P I  N  NK++S IE+   ++    E +GF +      
Sbjct: 281  TSENAPTKETNNIPNHRVLIKPEIQNNQKNKEMSKIEEKKALEA---EKYGFQKDGQDRP 337

Query: 973  LYKFGPNTIKKSKLGVDLKVGTA 1041
            L K   N++K + L  + + G+A
Sbjct: 338  LTKI--NSVKLNSLPSEYESGSA 358

>sp|Q63ZW7|INADL_MOUSE InaD-like protein (Inadl protein) (Pals1-associated tight junction
            protein) (Protein associated to tight junctions)
            (Channel-interacting PDZ domain protein)
          Length = 1834

 Score = 32.7 bits (73), Expect = 1.8
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = +2

Query: 677  PAAFNVELLSSTINQISSVNNSSYSKHPSEGHRSSEARKIRSRTLPGEKITPP 835
            P  F V+ LSST   I +VNN   +  P++   + E +  R  T P     PP
Sbjct: 1157 PVVFVVQSLSSTPRVIPTVNNKGKTPAPNQDQNTQERKAKRHGTAPPPMKLPP 1209

>sp|P62634|CNBP_RAT Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
           9)
 sp|P62633|CNBP_HUMAN Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
           9)
          Length = 177

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -2

Query: 785 LPNSCDLQKDACYNC 741
           L   CDLQ+DACYNC
Sbjct: 63  LAKDCDLQEDACYNC 77

>sp|O94685|UCP8_SCHPO UBA-domain containing protein 8
          Length = 884

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
 Frame = +2

Query: 557 NTATKRPIAFTSDDVINCKPRVGDEVQFGCLDRIASQ----YLPPAAFNVELLSSTINQI 724
           N +T  P+AFT+D+V N    V D      L+ +AS     + P A    E  SS++  +
Sbjct: 399 NASTAVPVAFTNDNVSNVPLSVADNEPNSTLNLLASSDTAAFEPTAVSLHENPSSSLEDL 458

Query: 725 -SSVNNSSYSKHPSEGHRSSEA 787
            S+  N+S+    S  ++++ A
Sbjct: 459 QSAFQNTSFQDQVSTQNQANTA 480

>sp|Q660Y4|EFG1_BORGA Elongation factor G 1 (EF-G 1)
          Length = 693

 Score = 30.4 bits (67), Expect = 8.8
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
 Frame = +2

Query: 140 RDQLQRACQVELFLSSFPSRKETRHIGVVKM-------FDGSAG--LIESDLPARGEQDM 292
           RDQL+    +   L   P   E +HIGV+ +       F+G  G  +IE ++P+    D+
Sbjct: 147 RDQLRSKLDLNSVLMQIPIGLEDKHIGVIDLVLMKAYYFEGKDGTEIIEKEIPS----DL 202

Query: 293 LVSFKAKEWLSTDS 334
           L   K K  +  D+
Sbjct: 203 LGEAKKKREIMLDA 216

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,944,035
Number of Sequences: 369166
Number of extensions: 2908342
Number of successful extensions: 7682
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7680
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 11388156010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00395

  1. Dr_sW_010_K06
  2. Dr_sW_012_H13