Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_K06
(841 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18395|CSDE1_RAT Cold shock domain protein E1 (UNR protein) 60 6e-09
sp|Q91W50|CSDE1_MOUSE Cold shock domain protein E1 60 6e-09
sp|O75534|CSDE1_HUMAN Cold shock domain protein E1 (UNR pro... 60 6e-09
sp|Q8WWN8|CEND3_HUMAN Centaurin-delta 3 (Cnt-d3) (Arf-GAP, ... 36 0.12
sp|Q8R5G7|CEND3_MOUSE Centaurin-delta 3 (Cnt-d3) (Arf-GAP, ... 35 0.26
sp|Q7G191|ALDO4_ARATH Aldehyde oxidase 4 (AtAO-4) (AtAO2) 34 0.57
sp|Q660Y4|EFG1_BORGA Elongation factor G 1 (EF-G 1) 30 6.4
sp|O30913|EFG1_BORBU Elongation factor G 1 (EF-G 1) 30 6.4
sp|P35824|SLAP_BACCI S-layer related protein precursor 30 8.3
>sp|P18395|CSDE1_RAT Cold shock domain protein E1 (UNR protein)
Length = 798
Score = 60.5 bits (145), Expect = 6e-09
Identities = 28/69 (40%), Positives = 43/69 (62%)
Frame = +2
Query: 53 QIPFGEKDKKYQYTLHPGDNVAFKIAIDRRDQLQRACQVELFLSSFPSRKETRHIGVVKM 232
++PFG+KD K + TL GD+V F I+ DRRD+L+RA +E+ ++F E R +GV+
Sbjct: 296 ELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAA 355
Query: 233 FDGSAGLIE 259
G I+
Sbjct: 356 MRDGFGFIK 364
>sp|Q91W50|CSDE1_MOUSE Cold shock domain protein E1
Length = 798
Score = 60.5 bits (145), Expect = 6e-09
Identities = 28/69 (40%), Positives = 43/69 (62%)
Frame = +2
Query: 53 QIPFGEKDKKYQYTLHPGDNVAFKIAIDRRDQLQRACQVELFLSSFPSRKETRHIGVVKM 232
++PFG+KD K + TL GD+V F I+ DRRD+L+RA +E+ ++F E R +GV+
Sbjct: 296 ELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAA 355
Query: 233 FDGSAGLIE 259
G I+
Sbjct: 356 MRDGFGFIK 364
>sp|O75534|CSDE1_HUMAN Cold shock domain protein E1 (UNR protein) (N-ras upstream gene
protein)
Length = 798
Score = 60.5 bits (145), Expect = 6e-09
Identities = 28/69 (40%), Positives = 43/69 (62%)
Frame = +2
Query: 53 QIPFGEKDKKYQYTLHPGDNVAFKIAIDRRDQLQRACQVELFLSSFPSRKETRHIGVVKM 232
++PFG+KD K + TL GD+V F I+ DRRD+L+RA +E+ ++F E R +GV+
Sbjct: 296 ELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAA 355
Query: 233 FDGSAGLIE 259
G I+
Sbjct: 356 MRDGFGFIK 364
>sp|Q8WWN8|CEND3_HUMAN Centaurin-delta 3 (Cnt-d3) (Arf-GAP, Rho-GAP, ankyrin repeat and
pleckstrin homology domain-containing protein 3)
Length = 1544
Score = 36.2 bits (82), Expect = 0.12
Identities = 19/43 (44%), Positives = 24/43 (55%)
Frame = +2
Query: 596 DVINCKPRVGDEVRLLLDIFCHKYRVVTCSGLNRYCSRWACLI 724
DVI C PRV R L + H YRV C+ LN+ C+R L+
Sbjct: 1018 DVIGCLPRVNR--RTLATLIGHLYRVQKCAALNQMCTRNLALL 1058
>sp|Q8R5G7|CEND3_MOUSE Centaurin-delta 3 (Cnt-d3) (Arf-GAP, Rho-GAP, ankyrin repeat and
pleckstrin homology domain-containing protein 3)
(Dual-specificity Rho-and Arf-GTPase-activating protein
1)
Length = 1538
Score = 35.0 bits (79), Expect = 0.26
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +2
Query: 596 DVINCKPRVGDEVRLLLDIFCHKYRVVTCSGLNRYCSRWACLI 724
+VI+C PRV R L + H YRV C+ LN+ C+R L+
Sbjct: 1014 EVISCLPRVNR--RTLATLIGHLYRVQKCASLNQMCTRNLALL 1054
>sp|Q7G191|ALDO4_ARATH Aldehyde oxidase 4 (AtAO-4) (AtAO2)
Length = 1337
Score = 33.9 bits (76), Expect = 0.57
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 8/90 (8%)
Frame = +2
Query: 284 QDMLVSFKAKEW--LSTDSKLTKFAVVSYTPLQVSKNVGGQQKLTYTALRIMPS------ 439
Q+++ S + +W LS D K+ K + S T L+ V G +Y A I+ +
Sbjct: 883 QNIMNSLRKYDWGALSFDIKVCKTNLPSRTSLRAPGEVQG----SYIAESIIENVASSLK 938
Query: 440 KDIDKMLHLKLYPARSLRGFVKTAANLPDD 529
D+D + + L+ SLR F K AA PD+
Sbjct: 939 MDVDVVRRINLHTYESLRKFYKQAAGEPDE 968
>sp|Q660Y4|EFG1_BORGA Elongation factor G 1 (EF-G 1)
Length = 693
Score = 30.4 bits (67), Expect = 6.4
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Frame = +2
Query: 140 RDQLQRACQVELFLSSFPSRKETRHIGVVKM-------FDGSAG--LIESDLPARGEQDM 292
RDQL+ + L P E +HIGV+ + F+G G +IE ++P+ D+
Sbjct: 147 RDQLRSKLDLNSVLMQIPIGLEDKHIGVIDLVLMKAYYFEGKDGTEIIEKEIPS----DL 202
Query: 293 LVSFKAKEWLSTDS 334
L K K + D+
Sbjct: 203 LGEAKKKREIMLDA 216
>sp|O30913|EFG1_BORBU Elongation factor G 1 (EF-G 1)
Length = 693
Score = 30.4 bits (67), Expect = 6.4
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Frame = +2
Query: 140 RDQLQRACQVELFLSSFPSRKETRHIGVVKM-------FDGSAG--LIESDLPARGEQDM 292
+DQL+ + L P E +HIGV+ + F+G G +IE ++P+ D+
Sbjct: 147 KDQLRSKLDLNSVLMQIPIGLEDKHIGVIDLVLMKAYYFEGKDGTEIIEKEIPS----DL 202
Query: 293 LVSFKAKEWLSTDS 334
L K+K + D+
Sbjct: 203 LEEAKSKREIMLDT 216
>sp|P35824|SLAP_BACCI S-layer related protein precursor
Length = 1616
Score = 30.0 bits (66), Expect = 8.3
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +2
Query: 212 HIGVVKMFDGSAGLIESDLPARGEQDMLV 298
H+G +++ AGL+E+DLPA G D+LV
Sbjct: 1307 HLGAIEL---PAGLLEADLPAVGSFDLLV 1332
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,082,464
Number of Sequences: 369166
Number of extensions: 2454629
Number of successful extensions: 5659
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5659
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8197207050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)