Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_H13
(738 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P38809|YHP7_YEAST Hypothetical 40.7 kDa protein in HXT5-... 33 0.61
sp|Q9HAU0|PLEA5_HUMAN Pleckstrin homology domain-containing... 33 0.61
sp|Q63ZW7|INADL_MOUSE InaD-like protein (Inadl protein) (Pa... 33 1.0
sp|P62634|CNBP_RAT Cellular nucleic acid binding protein (C... 31 3.0
sp|O94685|UCP8_SCHPO UBA-domain containing protein 8 31 3.0
sp|Q7G191|ALDO4_ARATH Aldehyde oxidase 4 (AtAO-4) (AtAO2) 30 5.1
sp|Q8D2L3|FUMC_WIGBR Fumarate hydratase class II (Fumarase C) 30 6.7
sp|Q9UJ42|GP160_HUMAN Probable G-protein coupled receptor 160 30 8.8
sp|P13846|DPOL_HHBV P protein [Includes: DNA-directed DNA p... 30 8.8
sp|Q8DMD8|HISZ_SYNEL ATP phosphoribosyltransferase regulato... 30 8.8
>sp|P38809|YHP7_YEAST Hypothetical 40.7 kDa protein in HXT5-NRK1 intergenic region
Length = 366
Score = 33.5 bits (75), Expect = 0.61
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +2
Query: 413 SSVNNSSYSKHPSEGHRSSEARKIRSRTLPGEKITPPSIIDTHSNHQSTGI 565
S +N + + S GHR + +K +SRT K+ PP +DT TG+
Sbjct: 95 SHQHNHHHHRRTSHGHRDKDKQKSKSRT----KVKPPKNVDTIDKMDVTGL 141
>sp|Q9HAU0|PLEA5_HUMAN Pleckstrin homology domain-containing protein family A member 5
(Phosphoinositol 3-phosphate-binding protein 2) (PEPP-2)
Length = 1116
Score = 33.5 bits (75), Expect = 0.61
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = +1
Query: 484 TLSNSSGRENNSSKYHRYS*QPPIDGNNSNKQLS-IEKSSWMDCDTEEYFGFVETADHSA 660
T N+ +E N+ HR +P I N NK++S IE+ ++ E +GF +
Sbjct: 281 TSENAPTKETNNIPNHRVLIKPEIQNNQKNKEMSKIEEKKALEA---EKYGFQKDGQDRP 337
Query: 661 LYKFGPNTIKKSKLGVDLKVGTA 729
L K N++K + L + + G+A
Sbjct: 338 LTKI--NSVKLNSLPSEYESGSA 358
>sp|Q63ZW7|INADL_MOUSE InaD-like protein (Inadl protein) (Pals1-associated tight junction
protein) (Protein associated to tight junctions)
(Channel-interacting PDZ domain protein)
Length = 1834
Score = 32.7 bits (73), Expect = 1.0
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = +2
Query: 365 PAAFNVELLSSTINQISSVNNSSYSKHPSEGHRSSEARKIRSRTLPGEKITPP 523
P F V+ LSST I +VNN + P++ + E + R T P PP
Sbjct: 1157 PVVFVVQSLSSTPRVIPTVNNKGKTPAPNQDQNTQERKAKRHGTAPPPMKLPP 1209
>sp|P62634|CNBP_RAT Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
sp|P62633|CNBP_HUMAN Cellular nucleic acid binding protein (CNBP) (Zinc finger protein
9)
Length = 177
Score = 31.2 bits (69), Expect = 3.0
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = -2
Query: 473 LPNSCDLQKDACYNC 429
L CDLQ+DACYNC
Sbjct: 63 LAKDCDLQEDACYNC 77
>sp|O94685|UCP8_SCHPO UBA-domain containing protein 8
Length = 884
Score = 31.2 bits (69), Expect = 3.0
Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Frame = +2
Query: 245 NTATKRPIAFTSDDVINCKPRVGDEVQFGCLDRIASQ----YLPPAAFNVELLSSTINQI 412
N +T P+AFT+D+V N V D L+ +AS + P A E SS++ +
Sbjct: 399 NASTAVPVAFTNDNVSNVPLSVADNEPNSTLNLLASSDTAAFEPTAVSLHENPSSSLEDL 458
Query: 413 -SSVNNSSYSKHPSEGHRSSEA 475
S+ N+S+ S ++++ A
Sbjct: 459 QSAFQNTSFQDQVSTQNQANTA 480
>sp|Q7G191|ALDO4_ARATH Aldehyde oxidase 4 (AtAO-4) (AtAO2)
Length = 1337
Score = 30.4 bits (67), Expect = 5.1
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Frame = +2
Query: 8 LSTDSKLTKFAVVSYTPLQVSKNVGGQQKLTYTALRIMPS------KDIDKMLHLKLYPA 169
LS D K+ K + S T L+ V G +Y A I+ + D+D + + L+
Sbjct: 897 LSFDIKVCKTNLPSRTSLRAPGEVQG----SYIAESIIENVASSLKMDVDVVRRINLHTY 952
Query: 170 RSLRGFVKTAANLPDD 217
SLR F K AA PD+
Sbjct: 953 ESLRKFYKQAAGEPDE 968
>sp|Q8D2L3|FUMC_WIGBR Fumarate hydratase class II (Fumarase C)
Length = 464
Score = 30.0 bits (66), Expect = 6.7
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Frame = +3
Query: 357 TCRQQHSMWNCYRRQSIKYHQSTTAVIASILL----KVTGVRKHVRYALELFRARK*LLQ 524
T Q+ S W C +++IKY +++ I+ I L TG+ H +Y+L +A K L +
Sbjct: 196 TLGQEVSSWYCMLKKNIKYIKNSILCISEIALGGTAVGTGLNAHEKYSL---KASKLLSE 252
Query: 525 VS-*ILIATTNRRE 563
++ I++TN+ E
Sbjct: 253 INKHNFISSTNKFE 266
>sp|Q9UJ42|GP160_HUMAN Probable G-protein coupled receptor 160
Length = 338
Score = 29.6 bits (65), Expect = 8.8
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -3
Query: 568 SYSRRLVVAMSIYDTWRSYFLARKSSRAYLTCFRTPVTFRRMLAITAVVD 419
+YSR +SI W S+F+ A++TC+ T + + IT+ ++
Sbjct: 169 AYSRHCPFYVSIQSYWLSFFMVMILFVAFITCWEEVTTLVQAIRITSYMN 218
>sp|P13846|DPOL_HHBV P protein [Includes: DNA-directed DNA polymerase ; RNA-directed DNA
polymerase ; Ribonuclease H ]
Length = 788
Score = 29.6 bits (65), Expect = 8.8
Identities = 22/74 (29%), Positives = 32/74 (43%)
Frame = -3
Query: 649 PLFRRNRNTLQYHNPSTKIFRWTIVYWSYSRRLVVAMSIYDTWRSYFLARKSSRAYLTCF 470
P F++N +L ++ K+F I+Y S+ LV Y TW L + AY +
Sbjct: 157 PEFQQNHESL-VNDYLNKLFEAGILYKRVSKHLVTFKGPYFTWEQKHLVPQQHGAYSSKI 215
Query: 469 RTPVTFRRMLAITA 428
RR ITA
Sbjct: 216 NDRQESRRRRIITA 229
>sp|Q8DMD8|HISZ_SYNEL ATP phosphoribosyltransferase regulatory subunit
Length = 408
Score = 29.6 bits (65), Expect = 8.8
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Frame = -1
Query: 378 LNAAGGKYCEAIRSKHPN*TSSPTRGLQLMTSSLVNAIGRLVAVL---GN*QMIIPRSSG 208
L A GG+Y + + HP+ + P G +L+ A+ A L + +++PR++
Sbjct: 279 LVAQGGRYDQLLSIYHPDGATVPGIGFVFNVEALLQAVAIPPAALLAPRSQWLVVPRTAN 338
Query: 207 KLAAVFTKPLRLRAG*SFRWSILSISL 127
LAA LR S R + + L
Sbjct: 339 ALAAALHHAQTLRLDGSTRVELALLEL 365
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,949,619
Number of Sequences: 369166
Number of extensions: 1892175
Number of successful extensions: 5388
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5386
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6631293200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)