Planaria EST Database

DrC_00375

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00375
         (1498 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7YR26|TOP1_CERAE  DNA topoisomerase I                         317   7e-86
sp|P11387|TOP1_HUMAN  DNA topoisomerase I                         316   1e-85
sp|Q9WUL0|TOP1_RAT  DNA topoisomerase I                           315   2e-85
sp|Q04750|TOP1_MOUSE  DNA topoisomerase I                         315   3e-85
sp|Q07050|TOP1_CRIGR  DNA topoisomerase I                         312   1e-84
sp|P30189|TOP1_DROME  DNA topoisomerase I                         293   9e-79
sp|Q969P6|TOP1M_HUMAN  DNA topoisomerase I, mitochondrial pr...   292   2e-78
sp|P41512|TOP1_XENLA  DNA topoisomerase I                         291   3e-78
sp|P93119|TOP1_DAUCA  DNA topoisomerase I                         236   1e-61
sp|P30181|TOP1_ARATH  DNA topoisomerase I                         231   3e-60

>sp|Q7YR26|TOP1_CERAE DNA topoisomerase I
          Length = 767

 Score =  317 bits (811), Expect = 7e-86
 Identities = 164/280 (58%), Positives = 198/280 (70%), Gaps = 1/280 (0%)
 Frame = +1

Query: 1    ALRAGNEKGEDE-ADTVGCCSLRVEHITLENDPNTDEYIVKFDFLGKDSIRYQNEVTVPK 177
            ALRAGNEK E E ADTVGCCSLRVEHI L  + +  EY+V+FDFLGKDSIRY N+V V K
Sbjct: 488  ALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPVEK 547

Query: 178  KVYKNLLRFKEGKQDGDDLFDRLNTTTLNQYLRDLMPGLTAKVFRTYNASITLERELVNK 357
            +V+KNL  F E KQ  DDLFDRLNT  LN++L+DLM GLTAKVFRTYNASITL+++L   
Sbjct: 548  RVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKEL 607

Query: 358  TNLDENLSNKVLAYNGANREVAKLCNHQRAVPKTFEKSMENLGEKIDKRKKEYSEVKEQA 537
            T  DEN+  K+L+YN ANR VA LCNHQRA PKTFEKSM NL  KID +K++ ++ +   
Sbjct: 608  TAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARRDL 667

Query: 538  KQLKSEYSKTKDSGIXXXXXXXXXXXXXXXXXXXXXINQQTDREKNKDVALGTSKLNYLD 717
            K  K++    KD+                         Q TDRE+NK +ALGTSKLNYLD
Sbjct: 668  KSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLD 727

Query: 718  PRISIAWCLKNKVPLNKIYNKTQLQKFQWAVDMTTKDYKF 837
            PRI++AWC K  VP+ KIYNKTQ +KF WA+DM  +DY+F
Sbjct: 728  PRITVAWCKKWGVPIEKIYNKTQREKFAWAIDMADEDYEF 767

>sp|P11387|TOP1_HUMAN DNA topoisomerase I
          Length = 765

 Score =  316 bits (810), Expect = 1e-85
 Identities = 164/280 (58%), Positives = 198/280 (70%), Gaps = 1/280 (0%)
 Frame = +1

Query: 1    ALRAGNEKGEDE-ADTVGCCSLRVEHITLENDPNTDEYIVKFDFLGKDSIRYQNEVTVPK 177
            ALRAGNEK E E ADTVGCCSLRVEHI L  + +  EY+V+FDFLGKDSIRY N+V V K
Sbjct: 486  ALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPVEK 545

Query: 178  KVYKNLLRFKEGKQDGDDLFDRLNTTTLNQYLRDLMPGLTAKVFRTYNASITLERELVNK 357
            +V+KNL  F E KQ  DDLFDRLNT  LN++L+DLM GLTAKVFRTYNASITL+++L   
Sbjct: 546  RVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKEL 605

Query: 358  TNLDENLSNKVLAYNGANREVAKLCNHQRAVPKTFEKSMENLGEKIDKRKKEYSEVKEQA 537
            T  DEN+  K+L+YN ANR VA LCNHQRA PKTFEKSM NL  KID +K++ ++ +   
Sbjct: 606  TAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDL 665

Query: 538  KQLKSEYSKTKDSGIXXXXXXXXXXXXXXXXXXXXXINQQTDREKNKDVALGTSKLNYLD 717
            K  K++    KD+                         Q TDRE+NK +ALGTSKLNYLD
Sbjct: 666  KSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLD 725

Query: 718  PRISIAWCLKNKVPLNKIYNKTQLQKFQWAVDMTTKDYKF 837
            PRI++AWC K  VP+ KIYNKTQ +KF WA+DM  +DY+F
Sbjct: 726  PRITVAWCKKWGVPIEKIYNKTQREKFAWAIDMADEDYEF 765

>sp|Q9WUL0|TOP1_RAT DNA topoisomerase I
          Length = 767

 Score =  315 bits (807), Expect = 2e-85
 Identities = 164/280 (58%), Positives = 198/280 (70%), Gaps = 1/280 (0%)
 Frame = +1

Query: 1    ALRAGNEKGEDE-ADTVGCCSLRVEHITLENDPNTDEYIVKFDFLGKDSIRYQNEVTVPK 177
            ALRAGNEK E E ADTVGCCSLRVEHI L  + +  EY+V+FDF GKDSIRY N+V V K
Sbjct: 488  ALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFPGKDSIRYYNKVPVEK 547

Query: 178  KVYKNLLRFKEGKQDGDDLFDRLNTTTLNQYLRDLMPGLTAKVFRTYNASITLERELVNK 357
            +V+KNL  F E KQ  DDLFDRLNT  LN++L+DLM GLTAKVFRTYNASITL+++L   
Sbjct: 548  RVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKEL 607

Query: 358  TNLDENLSNKVLAYNGANREVAKLCNHQRAVPKTFEKSMENLGEKIDKRKKEYSEVKEQA 537
            T  DEN+  K+L+YN ANR VA LCNHQRA PKTFEKSM NL  KID +K + ++ ++  
Sbjct: 608  TAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARKDL 667

Query: 538  KQLKSEYSKTKDSGIXXXXXXXXXXXXXXXXXXXXXINQQTDREKNKDVALGTSKLNYLD 717
            K  K++    KD+                         Q TDRE+NK +ALGTSKLNYLD
Sbjct: 668  KSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLD 727

Query: 718  PRISIAWCLKNKVPLNKIYNKTQLQKFQWAVDMTTKDYKF 837
            PRI++AWC K  VP+ KIYNKTQ +KF WA+DMT +DY+F
Sbjct: 728  PRITVAWCKKWGVPIEKIYNKTQREKFAWAIDMTDEDYEF 767

>sp|Q04750|TOP1_MOUSE DNA topoisomerase I
          Length = 767

 Score =  315 bits (806), Expect = 3e-85
 Identities = 164/280 (58%), Positives = 197/280 (70%), Gaps = 1/280 (0%)
 Frame = +1

Query: 1    ALRAGNEKGEDE-ADTVGCCSLRVEHITLENDPNTDEYIVKFDFLGKDSIRYQNEVTVPK 177
            ALRAGNEK E E ADTVGCCSLRVEHI L  + +  EY+V+FDF GKDSIRY N+V V K
Sbjct: 488  ALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFPGKDSIRYYNKVPVEK 547

Query: 178  KVYKNLLRFKEGKQDGDDLFDRLNTTTLNQYLRDLMPGLTAKVFRTYNASITLERELVNK 357
            +V+KNL  F E KQ  DDLFDRLNT  LN++L+DLM GLTAKVFRTYNASITL+++L   
Sbjct: 548  RVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKEL 607

Query: 358  TNLDENLSNKVLAYNGANREVAKLCNHQRAVPKTFEKSMENLGEKIDKRKKEYSEVKEQA 537
            T  DEN+  K+L+YN ANR VA LCNHQRA PKTFEKSM NL  KID +K + ++ +   
Sbjct: 608  TAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARRDL 667

Query: 538  KQLKSEYSKTKDSGIXXXXXXXXXXXXXXXXXXXXXINQQTDREKNKDVALGTSKLNYLD 717
            K  K++    KD+                         Q TDRE+NK +ALGTSKLNYLD
Sbjct: 668  KSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLD 727

Query: 718  PRISIAWCLKNKVPLNKIYNKTQLQKFQWAVDMTTKDYKF 837
            PRI++AWC K  VP+ KIYNKTQ +KF WA+DMT +DY+F
Sbjct: 728  PRITVAWCKKWGVPIEKIYNKTQREKFAWAIDMTDEDYEF 767

>sp|Q07050|TOP1_CRIGR DNA topoisomerase I
          Length = 767

 Score =  312 bits (800), Expect = 1e-84
 Identities = 163/280 (58%), Positives = 196/280 (70%), Gaps = 1/280 (0%)
 Frame = +1

Query: 1    ALRAGNEKGEDE-ADTVGCCSLRVEHITLENDPNTDEYIVKFDFLGKDSIRYQNEVTVPK 177
            ALRAGNEK E E ADTV CCSLRVEHI L  + +  EY+V+FDF GKDSIRY N+V V K
Sbjct: 488  ALRAGNEKEEGETADTVSCCSLRVEHINLHPELDGQEYVVEFDFPGKDSIRYYNKVPVEK 547

Query: 178  KVYKNLLRFKEGKQDGDDLFDRLNTTTLNQYLRDLMPGLTAKVFRTYNASITLERELVNK 357
            +V+KNL  F E KQ  DDLFDRLNT  LN++L+DLM GLTAKVFRTYNASITL+++L   
Sbjct: 548  RVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKEL 607

Query: 358  TNLDENLSNKVLAYNGANREVAKLCNHQRAVPKTFEKSMENLGEKIDKRKKEYSEVKEQA 537
            T  DEN+  K+L+YN ANR VA LCNHQRA PKTFEKSM NL  KID +K + ++ +   
Sbjct: 608  TAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARRDL 667

Query: 538  KQLKSEYSKTKDSGIXXXXXXXXXXXXXXXXXXXXXINQQTDREKNKDVALGTSKLNYLD 717
            K  K++    KD+                         Q TDRE+NK +ALGTSKLNYLD
Sbjct: 668  KSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLD 727

Query: 718  PRISIAWCLKNKVPLNKIYNKTQLQKFQWAVDMTTKDYKF 837
            PRI++AWC K  VP+ KIYNKTQ +KF WA+DMT +DY+F
Sbjct: 728  PRITVAWCKKWGVPIEKIYNKTQREKFAWAIDMTDEDYEF 767

>sp|P30189|TOP1_DROME DNA topoisomerase I
          Length = 972

 Score =  293 bits (750), Expect = 9e-79
 Identities = 159/287 (55%), Positives = 197/287 (68%), Gaps = 8/287 (2%)
 Frame = +1

Query: 1    ALRAGNEKGEDEADTVGCCSLRVEHITLENDPNTDEYIVKFDFLGKDSIRYQNEVTVPKK 180
            ALRAGNEK ED+ADTVGCCSLRVEH+ L  + N  E +V FDF GKDSIRY NEV V K+
Sbjct: 709  ALRAGNEKDEDQADTVGCCSLRVEHVQLHKELNGKENVVVFDFPGKDSIRYYNEVEVEKR 768

Query: 181  VYKNLLRFKEGKQDGDDLFDRLNTTTLNQYLRDLMPGLTAKVFRTYNASITLERELVNKT 360
            V+KNL  F E K++GDDLFDRLNT  LN++L++LM GLTAKVFRTYNAS TL+ +L   T
Sbjct: 769  VFKNLELFMEHKKEGDDLFDRLNTQVLNEHLKELMEGLTAKVFRTYNASKTLQSQLDLLT 828

Query: 361  NLDENLSNKVLAYNGANREVAKLCNHQRAVPKTFEKSMENLGEKI-------DKRKKEY- 516
            +    +  K+LAYN ANR VA LCNHQR+VPK+ EKSMENL EKI       +K + EY 
Sbjct: 829  DPSATVPEKLLAYNRANRAVAILCNHQRSVPKSHEKSMENLKEKIKAKREAIEKCESEYH 888

Query: 517  SEVKEQAKQLKSEYSKTKDSGIXXXXXXXXXXXXXXXXXXXXXINQQTDREKNKDVALGT 696
            S  +++ KQL+    + K   +                       Q+TDR++NK +ALGT
Sbjct: 889  SRDEKKGKQLERLRDQLKKLEL-----------------------QETDRDENKTIALGT 925

Query: 697  SKLNYLDPRISIAWCLKNKVPLNKIYNKTQLQKFQWAVDMTTKDYKF 837
            SKLNYLDPRIS+AWC K+ VP+ KI+NKTQ  KF WAV M  ++Y+F
Sbjct: 926  SKLNYLDPRISVAWCKKHDVPIEKIFNKTQRTKFLWAVHMADENYRF 972

>sp|Q969P6|TOP1M_HUMAN DNA topoisomerase I, mitochondrial precursor (TOP1mt)
          Length = 601

 Score =  292 bits (748), Expect = 2e-78
 Identities = 149/280 (53%), Positives = 195/280 (69%), Gaps = 1/280 (0%)
 Frame = +1

Query: 1    ALRAGNEKGEDEA-DTVGCCSLRVEHITLENDPNTDEYIVKFDFLGKDSIRYQNEVTVPK 177
            ALRAGNEK + EA DTVGCCSLRVEH+ L  + +  +++V+FDFLGKD IRY N V V K
Sbjct: 322  ALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPVEK 381

Query: 178  KVYKNLLRFKEGKQDGDDLFDRLNTTTLNQYLRDLMPGLTAKVFRTYNASITLERELVNK 357
             VYKNL  F E K   DDLFDRL TT+LN++L++LM GLTAKVFRTYNASITL+ +L   
Sbjct: 382  PVYKNLQLFMENKDPRDDLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLRAL 441

Query: 358  TNLDENLSNKVLAYNGANREVAKLCNHQRAVPKTFEKSMENLGEKIDKRKKEYSEVKEQA 537
            T  +++++ K+L+YN ANR VA LCNHQRA P TFEKSM+NL  KI  +K++ +E + + 
Sbjct: 442  TRAEDSIAAKILSYNRANRVVAILCNHQRATPSTFEKSMQNLQTKIQAKKEQVAEARAEL 501

Query: 538  KQLKSEYSKTKDSGIXXXXXXXXXXXXXXXXXXXXXINQQTDREKNKDVALGTSKLNYLD 717
            ++ ++E+    D                          Q TD+E+NK VALGTSKLNYLD
Sbjct: 502  RRARAEHKAQGDGKSRSVLEKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNYLD 561

Query: 718  PRISIAWCLKNKVPLNKIYNKTQLQKFQWAVDMTTKDYKF 837
            PRISIAWC + +VP+ KIY+KTQ ++F WA+ M  +D++F
Sbjct: 562  PRISIAWCKRFRVPVEKIYSKTQRERFAWALAMAGEDFEF 601

>sp|P41512|TOP1_XENLA DNA topoisomerase I
          Length = 829

 Score =  291 bits (746), Expect = 3e-78
 Identities = 153/263 (58%), Positives = 185/263 (70%), Gaps = 1/263 (0%)
 Frame = +1

Query: 1    ALRAGNEKGEDE-ADTVGCCSLRVEHITLENDPNTDEYIVKFDFLGKDSIRYQNEVTVPK 177
            ALRAGNEK E E ADTVGCCSLRVEHI L  + +  E++V+FDF GKDSIRY N+V V K
Sbjct: 542  ALRAGNEKEEGETADTVGCCSLRVEHINLFQELDGQEFVVEFDFPGKDSIRYYNKVPVEK 601

Query: 178  KVYKNLLRFKEGKQDGDDLFDRLNTTTLNQYLRDLMPGLTAKVFRTYNASITLERELVNK 357
            +V+KNL  F E KQ  DDLFDRLNT+ LN++L+DLM GLTAKVFRTYNASITL+++L   
Sbjct: 602  RVFKNLQLFMENKQPDDDLFDRLNTSILNKHLQDLMEGLTAKVFRTYNASITLQQQLDEL 661

Query: 358  TNLDENLSNKVLAYNGANREVAKLCNHQRAVPKTFEKSMENLGEKIDKRKKEYSEVKEQA 537
            TN D+N+  K+L+YN ANR VA LCNHQRA PKTFEKSM NL  KID +K + ++ + + 
Sbjct: 662  TNSDDNVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQGKIDAKKDQLADARREF 721

Query: 538  KQLKSEYSKTKDSGIXXXXXXXXXXXXXXXXXXXXXINQQTDREKNKDVALGTSKLNYLD 717
            K  K++    +D                          Q TDRE+NK +ALGTSKLNYLD
Sbjct: 722  KSAKADAKVRRDEKTKKLVESKKKAVQRIEEQLMKLEVQATDREENKQIALGTSKLNYLD 781

Query: 718  PRISIAWCLKNKVPLNKIYNKTQ 786
            PRIS+AWC K  VP+ KIYNKTQ
Sbjct: 782  PRISVAWCKKYGVPIEKIYNKTQ 804

>sp|P93119|TOP1_DAUCA DNA topoisomerase I
          Length = 790

 Score =  236 bits (603), Expect = 1e-61
 Identities = 132/302 (43%), Positives = 185/302 (61%), Gaps = 30/302 (9%)
 Frame = +1

Query: 1    ALRAGNEKGEDEADTVGCCSLRVEHITLENDPNTDEYIVKFDFLGKDSIRYQNEVTVPKK 180
            ALRAGNEK +DEADTVGCC+L+VE++  +  PN    I+KFDFLGKDSIRYQNEV V  +
Sbjct: 488  ALRAGNEKDDDEADTVGCCTLKVENVETKR-PN----ILKFDFLGKDSIRYQNEVEVEPR 542

Query: 181  VYKNLLRFKEGKQDGDDLFDRLNTTTLNQYLRDLMPGLTAKVFRTYNASITLER----EL 348
            V+  + +F+ GK+ GDDLFD+L+T+ LN +L++LMPGLTAKVFRTYNASITL+     +L
Sbjct: 543  VFSAIEQFRSGKEGGDDLFDQLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEMVRCKL 602

Query: 349  VNKTNLDENLSNKVLAYNGANREVAKLCNHQRAVPKTFEKSMENLGEKIDKRKKEYSEVK 528
            +++     +++ KV+ Y  AN+EVA +CNHQR V K+    M  L EKI++ K    E++
Sbjct: 603  LSRETKGGDVAEKVVVYQHANKEVAIICNHQRTVSKSHSAQMVRLNEKIEELKGLLKELQ 662

Query: 529  EQAKQLKSEYSKTKDSGIXXXXXXXXXXXXXXXXXXXXXINQ------------------ 654
            E   ++       K+S                       + +                  
Sbjct: 663  EDLTRVNKGKPPLKNSDGKPKRNLNLKRYKGKLLKLIQKLRKWSETRRLSVTKKIAQTNT 722

Query: 655  -----QTDREKNKD---VALGTSKLNYLDPRISIAWCLKNKVPLNKIYNKTQLQKFQWAV 810
                 + D+E  +D   VALGTSK+NYLDPRI++AWC ++ VP+ KI+NK+ L KF WA+
Sbjct: 723  KIEKMERDKETKEDLKTVALGTSKINYLDPRITVAWCKRHDVPIEKIFNKSLLAKFAWAM 782

Query: 811  DM 816
            D+
Sbjct: 783  DV 784

>sp|P30181|TOP1_ARATH DNA topoisomerase I
          Length = 916

 Score =  231 bits (590), Expect = 3e-60
 Identities = 131/290 (45%), Positives = 181/290 (62%), Gaps = 11/290 (3%)
 Frame = +1

Query: 1    ALRAGNEKGEDEADTVGCCSLRVEHITLENDPNTDEYIVKFDFLGKDSIRYQNEVTVPKK 180
            ALRAGNEK +DEADTVGCC+L+V ++     PN     +KFDFLGKDSI+Y N V V   
Sbjct: 638  ALRAGNEKDDDEADTVGCCTLKVGNVECI-PPNK----IKFDFLGKDSIQYVNTVEVEPL 692

Query: 181  VYKNLLRFKEGKQDGDDLFDRLNTTTLNQYLRDLMPGLTAKVFRTYNASITLERELVNKT 360
            VYK + +F+ GK   DDLFD L+T+ LN +L++L+PGLTAKVFRTYNASITL+ E++++ 
Sbjct: 693  VYKAIGQFQAGKSKTDDLFDELDTSKLNAHLKELVPGLTAKVFRTYNASITLD-EMLSQE 751

Query: 361  NLDENLSNKVLAYNGANREVAKLCNHQRAVPKTFEKSMENLGEKIDKRKKEYSEVKEQAK 540
              D +++ K++ Y  AN+EVA +CNHQR V KT        G +I+K      E+KE  K
Sbjct: 752  TKDGDVTQKIVVYQKANKEVAIICNHQRTVSKTH-------GAQIEKLTARIEELKEVLK 804

Query: 541  QLKSEYSKTKDSGIXXXXXXXXXXXXXXXXXXXXXINQQT-----------DREKNKDVA 687
            +LK+   + K                         I QQ+            +E  K VA
Sbjct: 805  ELKTNLDRAKKGKPPLEGSDGKKIRSLEPNAWEKKIAQQSAKIEKMERDMHTKEDLKTVA 864

Query: 688  LGTSKLNYLDPRISIAWCLKNKVPLNKIYNKTQLQKFQWAVDMTTKDYKF 837
            LGTSK+NYLDPRI++AWC +++VP+ KI+ K+ L+KF WA+D+   +Y+F
Sbjct: 865  LGTSKINYLDPRITVAWCKRHEVPIEKIFTKSLLEKFAWAMDV-EPEYRF 913

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,938,707
Number of Sequences: 369166
Number of extensions: 2153757
Number of successful extensions: 7191
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7146
length of database: 68,354,980
effective HSP length: 115
effective length of database: 47,110,455
effective search space used: 18043304265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00375

  1. Dr_sW_010_B07
  2. Dr_sW_026_I23