Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_010_B07
(975 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7YR26|TOP1_CERAE DNA topoisomerase I 317 4e-86
sp|P11387|TOP1_HUMAN DNA topoisomerase I 316 6e-86
sp|Q9WUL0|TOP1_RAT DNA topoisomerase I 315 1e-85
sp|Q04750|TOP1_MOUSE DNA topoisomerase I 315 2e-85
sp|Q07050|TOP1_CRIGR DNA topoisomerase I 312 8e-85
sp|P30189|TOP1_DROME DNA topoisomerase I 293 5e-79
sp|Q969P6|TOP1M_HUMAN DNA topoisomerase I, mitochondrial pr... 292 9e-79
sp|P41512|TOP1_XENLA DNA topoisomerase I 291 1e-78
sp|P93119|TOP1_DAUCA DNA topoisomerase I 236 6e-62
sp|P30181|TOP1_ARATH DNA topoisomerase I 231 2e-60
>sp|Q7YR26|TOP1_CERAE DNA topoisomerase I
Length = 767
Score = 317 bits (811), Expect = 4e-86
Identities = 164/280 (58%), Positives = 198/280 (70%), Gaps = 1/280 (0%)
Frame = +1
Query: 1 ALRAGNEKGEDE-ADTVGCCSLRVEHITLENDPNTDEYIVKFDFLGKDSIRYQNEVTVPK 177
ALRAGNEK E E ADTVGCCSLRVEHI L + + EY+V+FDFLGKDSIRY N+V V K
Sbjct: 488 ALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPVEK 547
Query: 178 KVYKNLLRFKEGKQDGDDLFDRLNTTTLNQYLRDLMPGLTAKVFRTYNASITLERELVNK 357
+V+KNL F E KQ DDLFDRLNT LN++L+DLM GLTAKVFRTYNASITL+++L
Sbjct: 548 RVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKEL 607
Query: 358 TNLDENLSNKVLAYNGANREVAKLCNHQRAVPKTFEKSMENLGEKIDKRKKEYSEVKEQA 537
T DEN+ K+L+YN ANR VA LCNHQRA PKTFEKSM NL KID +K++ ++ +
Sbjct: 608 TAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKEQLADARRDL 667
Query: 538 KQLKSEYSKTKDSGIXXXXXXXXXXXXXXXXXXXXXINQQTDREKNKDVALGTSKLNYLD 717
K K++ KD+ Q TDRE+NK +ALGTSKLNYLD
Sbjct: 668 KSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLD 727
Query: 718 PRISIAWCLKNKVPLNKIYNKTQLQKFQWAVDMTTKDYKF 837
PRI++AWC K VP+ KIYNKTQ +KF WA+DM +DY+F
Sbjct: 728 PRITVAWCKKWGVPIEKIYNKTQREKFAWAIDMADEDYEF 767
>sp|P11387|TOP1_HUMAN DNA topoisomerase I
Length = 765
Score = 316 bits (810), Expect = 6e-86
Identities = 164/280 (58%), Positives = 198/280 (70%), Gaps = 1/280 (0%)
Frame = +1
Query: 1 ALRAGNEKGEDE-ADTVGCCSLRVEHITLENDPNTDEYIVKFDFLGKDSIRYQNEVTVPK 177
ALRAGNEK E E ADTVGCCSLRVEHI L + + EY+V+FDFLGKDSIRY N+V V K
Sbjct: 486 ALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPVEK 545
Query: 178 KVYKNLLRFKEGKQDGDDLFDRLNTTTLNQYLRDLMPGLTAKVFRTYNASITLERELVNK 357
+V+KNL F E KQ DDLFDRLNT LN++L+DLM GLTAKVFRTYNASITL+++L
Sbjct: 546 RVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKEL 605
Query: 358 TNLDENLSNKVLAYNGANREVAKLCNHQRAVPKTFEKSMENLGEKIDKRKKEYSEVKEQA 537
T DEN+ K+L+YN ANR VA LCNHQRA PKTFEKSM NL KID +K++ ++ +
Sbjct: 606 TAPDENIPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDL 665
Query: 538 KQLKSEYSKTKDSGIXXXXXXXXXXXXXXXXXXXXXINQQTDREKNKDVALGTSKLNYLD 717
K K++ KD+ Q TDRE+NK +ALGTSKLNYLD
Sbjct: 666 KSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLD 725
Query: 718 PRISIAWCLKNKVPLNKIYNKTQLQKFQWAVDMTTKDYKF 837
PRI++AWC K VP+ KIYNKTQ +KF WA+DM +DY+F
Sbjct: 726 PRITVAWCKKWGVPIEKIYNKTQREKFAWAIDMADEDYEF 765
>sp|Q9WUL0|TOP1_RAT DNA topoisomerase I
Length = 767
Score = 315 bits (807), Expect = 1e-85
Identities = 164/280 (58%), Positives = 198/280 (70%), Gaps = 1/280 (0%)
Frame = +1
Query: 1 ALRAGNEKGEDE-ADTVGCCSLRVEHITLENDPNTDEYIVKFDFLGKDSIRYQNEVTVPK 177
ALRAGNEK E E ADTVGCCSLRVEHI L + + EY+V+FDF GKDSIRY N+V V K
Sbjct: 488 ALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFPGKDSIRYYNKVPVEK 547
Query: 178 KVYKNLLRFKEGKQDGDDLFDRLNTTTLNQYLRDLMPGLTAKVFRTYNASITLERELVNK 357
+V+KNL F E KQ DDLFDRLNT LN++L+DLM GLTAKVFRTYNASITL+++L
Sbjct: 548 RVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKEL 607
Query: 358 TNLDENLSNKVLAYNGANREVAKLCNHQRAVPKTFEKSMENLGEKIDKRKKEYSEVKEQA 537
T DEN+ K+L+YN ANR VA LCNHQRA PKTFEKSM NL KID +K + ++ ++
Sbjct: 608 TAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARKDL 667
Query: 538 KQLKSEYSKTKDSGIXXXXXXXXXXXXXXXXXXXXXINQQTDREKNKDVALGTSKLNYLD 717
K K++ KD+ Q TDRE+NK +ALGTSKLNYLD
Sbjct: 668 KSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLD 727
Query: 718 PRISIAWCLKNKVPLNKIYNKTQLQKFQWAVDMTTKDYKF 837
PRI++AWC K VP+ KIYNKTQ +KF WA+DMT +DY+F
Sbjct: 728 PRITVAWCKKWGVPIEKIYNKTQREKFAWAIDMTDEDYEF 767
>sp|Q04750|TOP1_MOUSE DNA topoisomerase I
Length = 767
Score = 315 bits (806), Expect = 2e-85
Identities = 164/280 (58%), Positives = 197/280 (70%), Gaps = 1/280 (0%)
Frame = +1
Query: 1 ALRAGNEKGEDE-ADTVGCCSLRVEHITLENDPNTDEYIVKFDFLGKDSIRYQNEVTVPK 177
ALRAGNEK E E ADTVGCCSLRVEHI L + + EY+V+FDF GKDSIRY N+V V K
Sbjct: 488 ALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFPGKDSIRYYNKVPVEK 547
Query: 178 KVYKNLLRFKEGKQDGDDLFDRLNTTTLNQYLRDLMPGLTAKVFRTYNASITLERELVNK 357
+V+KNL F E KQ DDLFDRLNT LN++L+DLM GLTAKVFRTYNASITL+++L
Sbjct: 548 RVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKEL 607
Query: 358 TNLDENLSNKVLAYNGANREVAKLCNHQRAVPKTFEKSMENLGEKIDKRKKEYSEVKEQA 537
T DEN+ K+L+YN ANR VA LCNHQRA PKTFEKSM NL KID +K + ++ +
Sbjct: 608 TAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARRDL 667
Query: 538 KQLKSEYSKTKDSGIXXXXXXXXXXXXXXXXXXXXXINQQTDREKNKDVALGTSKLNYLD 717
K K++ KD+ Q TDRE+NK +ALGTSKLNYLD
Sbjct: 668 KSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLD 727
Query: 718 PRISIAWCLKNKVPLNKIYNKTQLQKFQWAVDMTTKDYKF 837
PRI++AWC K VP+ KIYNKTQ +KF WA+DMT +DY+F
Sbjct: 728 PRITVAWCKKWGVPIEKIYNKTQREKFAWAIDMTDEDYEF 767
>sp|Q07050|TOP1_CRIGR DNA topoisomerase I
Length = 767
Score = 312 bits (800), Expect = 8e-85
Identities = 163/280 (58%), Positives = 196/280 (70%), Gaps = 1/280 (0%)
Frame = +1
Query: 1 ALRAGNEKGEDE-ADTVGCCSLRVEHITLENDPNTDEYIVKFDFLGKDSIRYQNEVTVPK 177
ALRAGNEK E E ADTV CCSLRVEHI L + + EY+V+FDF GKDSIRY N+V V K
Sbjct: 488 ALRAGNEKEEGETADTVSCCSLRVEHINLHPELDGQEYVVEFDFPGKDSIRYYNKVPVEK 547
Query: 178 KVYKNLLRFKEGKQDGDDLFDRLNTTTLNQYLRDLMPGLTAKVFRTYNASITLERELVNK 357
+V+KNL F E KQ DDLFDRLNT LN++L+DLM GLTAKVFRTYNASITL+++L
Sbjct: 548 RVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKEL 607
Query: 358 TNLDENLSNKVLAYNGANREVAKLCNHQRAVPKTFEKSMENLGEKIDKRKKEYSEVKEQA 537
T DEN+ K+L+YN ANR VA LCNHQRA PKTFEKSM NL KID +K + ++ +
Sbjct: 608 TAPDENVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQSKIDAKKDQLADARRDL 667
Query: 538 KQLKSEYSKTKDSGIXXXXXXXXXXXXXXXXXXXXXINQQTDREKNKDVALGTSKLNYLD 717
K K++ KD+ Q TDRE+NK +ALGTSKLNYLD
Sbjct: 668 KSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLD 727
Query: 718 PRISIAWCLKNKVPLNKIYNKTQLQKFQWAVDMTTKDYKF 837
PRI++AWC K VP+ KIYNKTQ +KF WA+DMT +DY+F
Sbjct: 728 PRITVAWCKKWGVPIEKIYNKTQREKFAWAIDMTDEDYEF 767
>sp|P30189|TOP1_DROME DNA topoisomerase I
Length = 972
Score = 293 bits (750), Expect = 5e-79
Identities = 159/287 (55%), Positives = 197/287 (68%), Gaps = 8/287 (2%)
Frame = +1
Query: 1 ALRAGNEKGEDEADTVGCCSLRVEHITLENDPNTDEYIVKFDFLGKDSIRYQNEVTVPKK 180
ALRAGNEK ED+ADTVGCCSLRVEH+ L + N E +V FDF GKDSIRY NEV V K+
Sbjct: 709 ALRAGNEKDEDQADTVGCCSLRVEHVQLHKELNGKENVVVFDFPGKDSIRYYNEVEVEKR 768
Query: 181 VYKNLLRFKEGKQDGDDLFDRLNTTTLNQYLRDLMPGLTAKVFRTYNASITLERELVNKT 360
V+KNL F E K++GDDLFDRLNT LN++L++LM GLTAKVFRTYNAS TL+ +L T
Sbjct: 769 VFKNLELFMEHKKEGDDLFDRLNTQVLNEHLKELMEGLTAKVFRTYNASKTLQSQLDLLT 828
Query: 361 NLDENLSNKVLAYNGANREVAKLCNHQRAVPKTFEKSMENLGEKI-------DKRKKEY- 516
+ + K+LAYN ANR VA LCNHQR+VPK+ EKSMENL EKI +K + EY
Sbjct: 829 DPSATVPEKLLAYNRANRAVAILCNHQRSVPKSHEKSMENLKEKIKAKREAIEKCESEYH 888
Query: 517 SEVKEQAKQLKSEYSKTKDSGIXXXXXXXXXXXXXXXXXXXXXINQQTDREKNKDVALGT 696
S +++ KQL+ + K + Q+TDR++NK +ALGT
Sbjct: 889 SRDEKKGKQLERLRDQLKKLEL-----------------------QETDRDENKTIALGT 925
Query: 697 SKLNYLDPRISIAWCLKNKVPLNKIYNKTQLQKFQWAVDMTTKDYKF 837
SKLNYLDPRIS+AWC K+ VP+ KI+NKTQ KF WAV M ++Y+F
Sbjct: 926 SKLNYLDPRISVAWCKKHDVPIEKIFNKTQRTKFLWAVHMADENYRF 972
>sp|Q969P6|TOP1M_HUMAN DNA topoisomerase I, mitochondrial precursor (TOP1mt)
Length = 601
Score = 292 bits (748), Expect = 9e-79
Identities = 149/280 (53%), Positives = 195/280 (69%), Gaps = 1/280 (0%)
Frame = +1
Query: 1 ALRAGNEKGEDEA-DTVGCCSLRVEHITLENDPNTDEYIVKFDFLGKDSIRYQNEVTVPK 177
ALRAGNEK + EA DTVGCCSLRVEH+ L + + +++V+FDFLGKD IRY N V V K
Sbjct: 322 ALRAGNEKEDGEAADTVGCCSLRVEHVQLHPEADGCQHVVEFDFLGKDCIRYYNRVPVEK 381
Query: 178 KVYKNLLRFKEGKQDGDDLFDRLNTTTLNQYLRDLMPGLTAKVFRTYNASITLERELVNK 357
VYKNL F E K DDLFDRL TT+LN++L++LM GLTAKVFRTYNASITL+ +L
Sbjct: 382 PVYKNLQLFMENKDPRDDLFDRLTTTSLNKHLQELMDGLTAKVFRTYNASITLQEQLRAL 441
Query: 358 TNLDENLSNKVLAYNGANREVAKLCNHQRAVPKTFEKSMENLGEKIDKRKKEYSEVKEQA 537
T +++++ K+L+YN ANR VA LCNHQRA P TFEKSM+NL KI +K++ +E + +
Sbjct: 442 TRAEDSIAAKILSYNRANRVVAILCNHQRATPSTFEKSMQNLQTKIQAKKEQVAEARAEL 501
Query: 538 KQLKSEYSKTKDSGIXXXXXXXXXXXXXXXXXXXXXINQQTDREKNKDVALGTSKLNYLD 717
++ ++E+ D Q TD+E+NK VALGTSKLNYLD
Sbjct: 502 RRARAEHKAQGDGKSRSVLEKKRRLLEKLQEQLAQLSVQATDKEENKQVALGTSKLNYLD 561
Query: 718 PRISIAWCLKNKVPLNKIYNKTQLQKFQWAVDMTTKDYKF 837
PRISIAWC + +VP+ KIY+KTQ ++F WA+ M +D++F
Sbjct: 562 PRISIAWCKRFRVPVEKIYSKTQRERFAWALAMAGEDFEF 601
>sp|P41512|TOP1_XENLA DNA topoisomerase I
Length = 829
Score = 291 bits (746), Expect = 1e-78
Identities = 153/263 (58%), Positives = 185/263 (70%), Gaps = 1/263 (0%)
Frame = +1
Query: 1 ALRAGNEKGEDE-ADTVGCCSLRVEHITLENDPNTDEYIVKFDFLGKDSIRYQNEVTVPK 177
ALRAGNEK E E ADTVGCCSLRVEHI L + + E++V+FDF GKDSIRY N+V V K
Sbjct: 542 ALRAGNEKEEGETADTVGCCSLRVEHINLFQELDGQEFVVEFDFPGKDSIRYYNKVPVEK 601
Query: 178 KVYKNLLRFKEGKQDGDDLFDRLNTTTLNQYLRDLMPGLTAKVFRTYNASITLERELVNK 357
+V+KNL F E KQ DDLFDRLNT+ LN++L+DLM GLTAKVFRTYNASITL+++L
Sbjct: 602 RVFKNLQLFMENKQPDDDLFDRLNTSILNKHLQDLMEGLTAKVFRTYNASITLQQQLDEL 661
Query: 358 TNLDENLSNKVLAYNGANREVAKLCNHQRAVPKTFEKSMENLGEKIDKRKKEYSEVKEQA 537
TN D+N+ K+L+YN ANR VA LCNHQRA PKTFEKSM NL KID +K + ++ + +
Sbjct: 662 TNSDDNVPAKILSYNRANRAVAILCNHQRAPPKTFEKSMMNLQGKIDAKKDQLADARREF 721
Query: 538 KQLKSEYSKTKDSGIXXXXXXXXXXXXXXXXXXXXXINQQTDREKNKDVALGTSKLNYLD 717
K K++ +D Q TDRE+NK +ALGTSKLNYLD
Sbjct: 722 KSAKADAKVRRDEKTKKLVESKKKAVQRIEEQLMKLEVQATDREENKQIALGTSKLNYLD 781
Query: 718 PRISIAWCLKNKVPLNKIYNKTQ 786
PRIS+AWC K VP+ KIYNKTQ
Sbjct: 782 PRISVAWCKKYGVPIEKIYNKTQ 804
>sp|P93119|TOP1_DAUCA DNA topoisomerase I
Length = 790
Score = 236 bits (603), Expect = 6e-62
Identities = 132/302 (43%), Positives = 185/302 (61%), Gaps = 30/302 (9%)
Frame = +1
Query: 1 ALRAGNEKGEDEADTVGCCSLRVEHITLENDPNTDEYIVKFDFLGKDSIRYQNEVTVPKK 180
ALRAGNEK +DEADTVGCC+L+VE++ + PN I+KFDFLGKDSIRYQNEV V +
Sbjct: 488 ALRAGNEKDDDEADTVGCCTLKVENVETKR-PN----ILKFDFLGKDSIRYQNEVEVEPR 542
Query: 181 VYKNLLRFKEGKQDGDDLFDRLNTTTLNQYLRDLMPGLTAKVFRTYNASITLER----EL 348
V+ + +F+ GK+ GDDLFD+L+T+ LN +L++LMPGLTAKVFRTYNASITL+ +L
Sbjct: 543 VFSAIEQFRSGKEGGDDLFDQLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEMVRCKL 602
Query: 349 VNKTNLDENLSNKVLAYNGANREVAKLCNHQRAVPKTFEKSMENLGEKIDKRKKEYSEVK 528
+++ +++ KV+ Y AN+EVA +CNHQR V K+ M L EKI++ K E++
Sbjct: 603 LSRETKGGDVAEKVVVYQHANKEVAIICNHQRTVSKSHSAQMVRLNEKIEELKGLLKELQ 662
Query: 529 EQAKQLKSEYSKTKDSGIXXXXXXXXXXXXXXXXXXXXXINQ------------------ 654
E ++ K+S + +
Sbjct: 663 EDLTRVNKGKPPLKNSDGKPKRNLNLKRYKGKLLKLIQKLRKWSETRRLSVTKKIAQTNT 722
Query: 655 -----QTDREKNKD---VALGTSKLNYLDPRISIAWCLKNKVPLNKIYNKTQLQKFQWAV 810
+ D+E +D VALGTSK+NYLDPRI++AWC ++ VP+ KI+NK+ L KF WA+
Sbjct: 723 KIEKMERDKETKEDLKTVALGTSKINYLDPRITVAWCKRHDVPIEKIFNKSLLAKFAWAM 782
Query: 811 DM 816
D+
Sbjct: 783 DV 784
>sp|P30181|TOP1_ARATH DNA topoisomerase I
Length = 916
Score = 231 bits (590), Expect = 2e-60
Identities = 131/290 (45%), Positives = 181/290 (62%), Gaps = 11/290 (3%)
Frame = +1
Query: 1 ALRAGNEKGEDEADTVGCCSLRVEHITLENDPNTDEYIVKFDFLGKDSIRYQNEVTVPKK 180
ALRAGNEK +DEADTVGCC+L+V ++ PN +KFDFLGKDSI+Y N V V
Sbjct: 638 ALRAGNEKDDDEADTVGCCTLKVGNVECI-PPNK----IKFDFLGKDSIQYVNTVEVEPL 692
Query: 181 VYKNLLRFKEGKQDGDDLFDRLNTTTLNQYLRDLMPGLTAKVFRTYNASITLERELVNKT 360
VYK + +F+ GK DDLFD L+T+ LN +L++L+PGLTAKVFRTYNASITL+ E++++
Sbjct: 693 VYKAIGQFQAGKSKTDDLFDELDTSKLNAHLKELVPGLTAKVFRTYNASITLD-EMLSQE 751
Query: 361 NLDENLSNKVLAYNGANREVAKLCNHQRAVPKTFEKSMENLGEKIDKRKKEYSEVKEQAK 540
D +++ K++ Y AN+EVA +CNHQR V KT G +I+K E+KE K
Sbjct: 752 TKDGDVTQKIVVYQKANKEVAIICNHQRTVSKTH-------GAQIEKLTARIEELKEVLK 804
Query: 541 QLKSEYSKTKDSGIXXXXXXXXXXXXXXXXXXXXXINQQT-----------DREKNKDVA 687
+LK+ + K I QQ+ +E K VA
Sbjct: 805 ELKTNLDRAKKGKPPLEGSDGKKIRSLEPNAWEKKIAQQSAKIEKMERDMHTKEDLKTVA 864
Query: 688 LGTSKLNYLDPRISIAWCLKNKVPLNKIYNKTQLQKFQWAVDMTTKDYKF 837
LGTSK+NYLDPRI++AWC +++VP+ KI+ K+ L+KF WA+D+ +Y+F
Sbjct: 865 LGTSKINYLDPRITVAWCKRHEVPIEKIFTKSLLEKFAWAMDV-EPEYRF 913
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,798,946
Number of Sequences: 369166
Number of extensions: 1673632
Number of successful extensions: 5938
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5894
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10191921135
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)