Planaria EST Database

DrC_00364

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00364
         (457 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P29126|XYNA_RUMFL  Bifunctional endo-1,4-beta-xylanase xy...    44   1e-04
sp|P49927|PRIO_PIG  Major prion protein precursor (PrP)            35   0.10 
sp|Q95211|PRIO_RABIT  Major prion protein precursor (PrP) (P...    33   0.30 
sp|Q01714|SP1_RAT  Transcription factor Sp1                        33   0.30 
sp|O89090|SP1_MOUSE  Transcription factor Sp1                      33   0.30 
sp|Q9UPQ9|TNC6B_HUMAN  Trinucleotide repeat-containing 6B pr...    33   0.39 
sp|P52113|PRIO_CAPHI  Major prion protein precursor (PrP)          32   0.51 
sp|P67986|PRIO_CEREN  Major prion protein precursor (PrP) >g...    32   0.51 
sp|P23907|PRIO_SHEEP  Major prion protein precursor (PrP)          32   0.51 
sp|P52114|PRIO_MUSPF  Major prion protein precursor (PrP) (P...    32   0.51 

>sp|P29126|XYNA_RUMFL Bifunctional endo-1,4-beta-xylanase xylA precursor
          Length = 954

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 29/95 (30%), Positives = 35/95 (36%), Gaps = 3/95 (3%)
 Frame = +2

Query: 5   NNMAQNGNSINQHMGRSADMMPNPWDPQ-MWNPNHLTTSAMQPSQASNNGWGPMTNGGWD 181
           NN  QN N  N   G   +   N WD    WN           +Q  NN W       W+
Sbjct: 463 NNWNQNNNQQNAWNGWDNNNNWNQWDQNNQWN-----------NQQQNNTWDWNNQNNWN 511

Query: 182 QGHPNNQWNALSGFSMQTNSGNDWR--SNMSNGMN 280
               NN WN  +    Q N  NDW   +N +N  N
Sbjct: 512 NNQQNNDWNQWNNQGQQQN--NDWNQWNNQNNNQN 544


 Score = 41.2 bits (95), Expect = 0.001
 Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 3/92 (3%)
 Frame = +2

Query: 5   NNMAQNGNSINQHMGRSADMMP-NPWDPQM-WNPNHLTTSAMQPSQASNNGWGPMTNGGW 178
           NN  Q  N  NQ   +       N W+ Q  WN N+   +A        NGW    N  W
Sbjct: 434 NNNQQQNNDWNQWNNQGQQNNDWNQWNNQNNWNQNNNQQNAW-------NGWD--NNNNW 484

Query: 179 DQGHPNNQW-NALSGFSMQTNSGNDWRSNMSN 271
           +Q   NNQW N     +   N+ N+W +N  N
Sbjct: 485 NQWDQNNQWNNQQQNNTWDWNNQNNWNNNQQN 516


 Score = 41.2 bits (95), Expect = 0.001
 Identities = 28/106 (26%), Positives = 39/106 (36%), Gaps = 9/106 (8%)
 Frame = +2

Query: 5   NNMAQNGNSINQHMGRSADMMPNPWD---PQMWNPNHLTTSAMQPSQASNNG--WGPMTN 169
           NN  Q  N+         +   N WD      WN N+   +A      +NN   WG   N
Sbjct: 523 NNQGQQQNNDWNQWNNQNNNQNNGWDWNNQNNWNQNNNQQNAWNGWDNNNNWNQWGGQNN 582

Query: 170 GGWDQGHPNNQWNALSGFSMQTNSG----NDWRSNMSNGMNPSAAS 295
             W+    NN WN  +    Q N+     N+W     N  N + +S
Sbjct: 583 D-WNNQQQNNDWNQWNNQGQQQNNDWNNQNNWNQGQQNNNNSAGSS 627


 Score = 38.1 bits (87), Expect = 0.009
 Identities = 28/100 (28%), Positives = 36/100 (36%), Gaps = 8/100 (8%)
 Frame = +2

Query: 5   NNMAQNGNSINQ--HMGRSADMMPNPWDPQMWNPNHLTTSAMQPSQ------ASNNGWGP 160
           NN  Q  N  NQ  + G+  +   N W  Q  + N       Q +         NN W  
Sbjct: 292 NNWGQQNNDWNQWNNQGQQQNNDWNNWGQQNNDWNQWNNQGQQQNNDWNNWGQQNNDWNQ 351

Query: 161 MTNGGWDQGHPNNQWNALSGFSMQTNSGNDWRSNMSNGMN 280
             N G  Q   NN WN    +  Q N  N W +  +N  N
Sbjct: 352 WNNQGQQQ---NNDWN---NWGQQNNDWNQWNNQNNNQQN 385


 Score = 37.7 bits (86), Expect = 0.012
 Identities = 27/99 (27%), Positives = 36/99 (36%), Gaps = 10/99 (10%)
 Frame = +2

Query: 5   NNMAQNG----NSINQHMGRSADMMPNPWDPQMWNPNHLTTSAMQPSQASNNGWGPMTNG 172
           NN  QN     N+ N       +   N W+ Q    N+        +   NNGW      
Sbjct: 494 NNQQQNNTWDWNNQNNWNNNQQNNDWNQWNNQGQQQNNDWNQWNNQNNNQNNGWDWNNQN 553

Query: 173 GWDQGHPNNQWNALSGFSMQTN------SGNDWRSNMSN 271
            W+Q   NNQ NA +G+    N        NDW +   N
Sbjct: 554 NWNQN--NNQQNAWNGWDNNNNWNQWGGQNNDWNNQQQN 590


 Score = 37.0 bits (84), Expect = 0.021
 Identities = 28/102 (27%), Positives = 38/102 (37%), Gaps = 13/102 (12%)
 Frame = +2

Query: 5   NNMAQNGNSINQHMGRSADMMP--NPWDPQM-WNPNHL--------TTSAMQPSQASNNG 151
           NN  Q  N  NQ   ++ +     N WD    WN N+           +    +Q  NN 
Sbjct: 364 NNWGQQNNDWNQWNNQNNNQQNAWNGWDNNNNWNQNNQQQNNWDWNNQNNWNNNQQQNND 423

Query: 152 WGPMTN-GGWDQGHP-NNQWNALSGFSMQTNSGNDWRSNMSN 271
           W    N   W+     NN WN  +    Q N  N W +N +N
Sbjct: 424 WNQWNNQNNWNNNQQQNNDWNQWNNQGQQNNDWNQW-NNQNN 464


 Score = 34.7 bits (78), Expect = 0.10
 Identities = 25/89 (28%), Positives = 34/89 (38%), Gaps = 4/89 (4%)
 Frame = +2

Query: 5   NNMAQNGNSINQHMGRSAD----MMPNPWDPQMWNPNHLTTSAMQPSQASNNGWGPMTNG 172
           +N + N  S++   G S+D       N W+ Q  N N    +        NN W    N 
Sbjct: 227 SNGSANVKSVSVTQGGSSDNGGQQQNNDWNQQ--NNNQQQNNDWNNWGQQNNDWNQWNN- 283

Query: 173 GWDQGHPNNQWNALSGFSMQTNSGNDWRS 259
              QG  NN WN    +  Q N  N W +
Sbjct: 284 ---QGQQNNDWN---NWGQQNNDWNQWNN 306


 Score = 33.9 bits (76), Expect = 0.17
 Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 8/100 (8%)
 Frame = +2

Query: 5   NNMAQNGNSINQ--HMGRSADMMPNPWDPQMWNPNHLTTSAMQPSQ------ASNNGWGP 160
           NN  Q  N  NQ  + G+  +   N W  Q  + N       Q +         NN W  
Sbjct: 316 NNWGQQNNDWNQWNNQGQQQNNDWNNWGQQNNDWNQWNNQGQQQNNDWNNWGQQNNDWNQ 375

Query: 161 MTNGGWDQGHPNNQWNALSGFSMQTNSGNDWRSNMSNGMN 280
             N   +Q +  N W+  + ++      N+W  N  N  N
Sbjct: 376 WNNQNNNQQNAWNGWDNNNNWNQNNQQQNNWDWNNQNNWN 415

>sp|P49927|PRIO_PIG Major prion protein precursor (PrP)
          Length = 257

 Score = 34.7 bits (78), Expect = 0.10
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = +2

Query: 134 QASNNGWGPMTNGGWDQGHPNNQWNALSGFSMQTNSGNDWRSNMSNGMNPSAA 292
           Q    GWG    GGW Q H    W    G   Q N  +  ++NM +    +AA
Sbjct: 70  QPHGGGWGQPHGGGWGQPHGGGGWGQGGGSHGQWNKPSKPKTNMKHVAGAAAA 122


 Score = 28.5 bits (62), Expect = 7.3
 Identities = 21/74 (28%), Positives = 23/74 (31%), Gaps = 2/74 (2%)
 Frame = +2

Query: 92  WNPNHLTTSAMQPSQASNNG--WGPMTNGGWDQGHPNNQWNALSGFSMQTNSGNDWRSNM 265
           WN    T  +  P Q S  G  + P   GGW Q H    W    G       G  W    
Sbjct: 34  WN----TGGSRYPGQGSPGGNRYPPQGGGGWGQPH-GGGWGQPHGGGWGQPHGGGWGQPH 88

Query: 266 SNGMNPSAASMHGQ 307
             G        HGQ
Sbjct: 89  GGGGWGQGGGSHGQ 102

>sp|Q95211|PRIO_RABIT Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)
          Length = 252

 Score = 33.1 bits (74), Expect = 0.30
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 134 QASNNGWGPMTNGGWDQGHPNNQW 205
           Q    GWG    GGW QG  +NQW
Sbjct: 75  QPHGGGWGQPHGGGWGQGGTHNQW 98

>sp|Q01714|SP1_RAT Transcription factor Sp1
          Length = 786

 Score = 33.1 bits (74), Expect = 0.30
 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
 Frame = +2

Query: 14  AQNGNSINQHMGRSADMMPNPWD------PQMWNPNHLTTSAMQPSQASNNGWGPMTNGG 175
           +  G+S +   G   +  P+P         ++ +PN  + ++  PSQ+   G   +T   
Sbjct: 41  SSTGSSSSSGGGGGQESQPSPLALLAATCSRIESPNENSNNSQGPSQSGGTGELDLTATQ 100

Query: 176 WDQGHPNNQWNALSGFSMQTNSGNDWRSNMSNGMNPSAAS 295
             QG   N W  +S  S  T +  +   N +NG N S +S
Sbjct: 101 LSQGA--NGWQIISSSSGATPTSKEQSGNSTNGSNGSESS 138

>sp|O89090|SP1_MOUSE Transcription factor Sp1
          Length = 784

 Score = 33.1 bits (74), Expect = 0.30
 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 6/100 (6%)
 Frame = +2

Query: 14  AQNGNSINQHMGRSADMMPNPWD------PQMWNPNHLTTSAMQPSQASNNGWGPMTNGG 175
           +  G+S +   G   +  P+P         ++ +PN  + ++  PSQ+   G   +T   
Sbjct: 42  SSTGSSSSSGGGGGQESQPSPLALLAATCSRIESPNENSNNSQGPSQSGGTGELDLTATQ 101

Query: 176 WDQGHPNNQWNALSGFSMQTNSGNDWRSNMSNGMNPSAAS 295
             QG   N W  +S  S  T +  +   N +NG N S +S
Sbjct: 102 LSQGA--NGWQIISSSSGATPTSKEQSGNSTNGSNGSESS 139

>sp|Q9UPQ9|TNC6B_HUMAN Trinucleotide repeat-containing 6B protein
          Length = 1723

 Score = 32.7 bits (73), Expect = 0.39
 Identities = 30/105 (28%), Positives = 38/105 (36%), Gaps = 4/105 (3%)
 Frame = +2

Query: 2   GNNMAQNGNSINQHMGRSADMMPNPWDPQMWNPNHLTTSAMQPSQASNNGWGPMTNGGWD 181
           G N  +N NS N   GR     P+   P  WN N          +  N GW    NG  +
Sbjct: 697 GWNDYKNNNSSNWGGGR-----PDEKTPSSWNENPSKDQGWGGGRQPNQGWSSGKNGWGE 751

Query: 182 Q--GHPNNQW--NALSGFSMQTNSGNDWRSNMSNGMNPSAASMHG 304
           +     N+ W  +A    S     G +      NG N S AS  G
Sbjct: 752 EVDQTKNSNWESSASKPVSGWGEGGQNEIGTWGNGGNASLASKGG 796

>sp|P52113|PRIO_CAPHI Major prion protein precursor (PrP)
          Length = 256

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = +2

Query: 134 QASNNGWGPMTNGGWDQGHPNNQWNALSGFSMQTNSGNDWRSNMSNGMNPSAA 292
           Q    GWG    GGW Q H    W    G   Q N  +  ++NM +    +AA
Sbjct: 70  QPHGGGWGQPHGGGWGQPHGGGGWGQ-GGSHSQWNKPSKPKTNMKHVAGAAAA 121

>sp|P67986|PRIO_CEREN Major prion protein precursor (PrP)
 sp|P67987|PRIO_CEREL Major prion protein precursor (PrP)
          Length = 256

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = +2

Query: 134 QASNNGWGPMTNGGWDQGHPNNQWNALSGFSMQTNSGNDWRSNMSNGMNPSAA 292
           Q    GWG    GGW Q H    W    G   Q N  +  ++NM +    +AA
Sbjct: 70  QPHGGGWGQPHGGGWGQPHGGGGWGQ-GGTHSQWNKPSKPKTNMKHVAGAAAA 121

>sp|P23907|PRIO_SHEEP Major prion protein precursor (PrP)
          Length = 256

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = +2

Query: 134 QASNNGWGPMTNGGWDQGHPNNQWNALSGFSMQTNSGNDWRSNMSNGMNPSAA 292
           Q    GWG    GGW Q H    W    G   Q N  +  ++NM +    +AA
Sbjct: 70  QPHGGGWGQPHGGGWGQPHGGGGWGQ-GGSHSQWNKPSKPKTNMKHVAGAAAA 121

>sp|P52114|PRIO_MUSPF Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)
          Length = 257

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 16/53 (30%), Positives = 21/53 (39%)
 Frame = +2

Query: 134 QASNNGWGPMTNGGWDQGHPNNQWNALSGFSMQTNSGNDWRSNMSNGMNPSAA 292
           Q    GWG    GGW Q H    W    G   Q    +  ++NM +    +AA
Sbjct: 70  QPHGGGWGQPHGGGWGQPHGGGGWGQGGGSHGQWGKPSKPKTNMKHVAGAAAA 122


 Score = 28.5 bits (62), Expect = 7.3
 Identities = 21/74 (28%), Positives = 23/74 (31%), Gaps = 2/74 (2%)
 Frame = +2

Query: 92  WNPNHLTTSAMQPSQASNNG--WGPMTNGGWDQGHPNNQWNALSGFSMQTNSGNDWRSNM 265
           WN    T  +  P Q S  G  + P   GGW Q H    W    G       G  W    
Sbjct: 34  WN----TGGSRYPGQGSPGGNRYPPQGGGGWGQPH-GGGWGQPHGGGWGQPHGGGWGQPH 88

Query: 266 SNGMNPSAASMHGQ 307
             G        HGQ
Sbjct: 89  GGGGWGQGGGSHGQ 102

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,784,087
Number of Sequences: 369166
Number of extensions: 1161734
Number of successful extensions: 3340
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3199
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2484837250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00364

  1. Dr_sW_009_K19
  2. Dr_sW_020_D13