Planaria EST Database

DrC_00356

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00356
         (597 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P50882|RL9_DROME  60S ribosomal protein L9                     210   2e-54
sp|Q963B7|RL9_SPOFR  60S ribosomal protein L9                     202   7e-52
sp|P51410|RL9_MOUSE  60S ribosomal protein L9                     200   2e-51
sp|P17077|RL9_RAT  60S ribosomal protein L9                       199   3e-51
sp|P32969|RL9_HUMAN  60S ribosomal protein L9                     199   3e-51
sp|Q5IFJ7|RL9_MACFA  60S ribosomal protein L9                     199   4e-51
sp|Q90YW0|RL9_ICTPU  60S ribosomal protein L9                     196   5e-50
sp|P49210|RL9_ORYSA  60S ribosomal protein L9                     193   3e-49
sp|P30707|RL9_PEA  60S ribosomal protein L9 (Gibberellin-reg...   191   9e-49
sp|Q95Y90|RL9_CAEEL  60S ribosomal protein L9                     190   3e-48

>sp|P50882|RL9_DROME 60S ribosomal protein L9
          Length = 190

 Score =  210 bits (535), Expect = 2e-54
 Identities = 113/181 (62%), Positives = 137/181 (75%), Gaps = 2/181 (1%)
 Frame = +1

Query: 13  MRTILSEQVVEVPEGIKVTSNARVVRVAGKRGLLKRDFKHLAVEIHVV-KNTIKVVKYFG 189
           MRTI S Q V++P+ IK +  ARVV + G RG LKR FKHLA+++++  K T+KV K+FG
Sbjct: 1   MRTINSNQCVKIPKDIKASVKARVVTITGTRGTLKRSFKHLALDMYMPDKRTLKVEKWFG 60

Query: 190 GKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVIAEKNDAITIRNFLGEKL 369
            KK++AAVRTV SHIENMI GVT GF+ KM+AVYAHFPIN V +E N  I IRNFLGEK 
Sbjct: 61  TKKELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIRNFLGEKY 120

Query: 370 DRHVAMKEGVK-VSATGVKDEIQIEGNDIELVAKCAALIQQKCKVRNKDIRKFLDGVYVS 546
            R V M  GV  V++T  KDE+ +EGNDIE V+  AALIQQ   V+NKDIRKFLDG+YVS
Sbjct: 121 IRRVEMAPGVTVVNSTAQKDELIVEGNDIESVSGSAALIQQSTTVKNKDIRKFLDGLYVS 180

Query: 547 E 549
           E
Sbjct: 181 E 181

>sp|Q963B7|RL9_SPOFR 60S ribosomal protein L9
          Length = 190

 Score =  202 bits (513), Expect = 7e-52
 Identities = 108/186 (58%), Positives = 136/186 (73%), Gaps = 2/186 (1%)
 Frame = +1

Query: 13  MRTILSEQVVEVPEGIKVTSNARVVRVAGKRGLLKRDFKHLAVEIHVVK-NTIKVVKYFG 189
           M+ I++ Q V++PEG+ V   +R+V V G RG+LKR+FKHLAV+I +V    +KV K+FG
Sbjct: 1   MKQIVANQKVKIPEGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRVLKVEKWFG 60

Query: 190 GKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVIAEKNDAITIRNFLGEKL 369
            KK++AAVRTV SH+ENMI GVT+GF+ KM++VYAHFPIN V  E N  I IRNFLGEK 
Sbjct: 61  SKKELAAVRTVCSHVENMIKGVTKGFQYKMRSVYAHFPINCVTTEGNSVIEIRNFLGEKY 120

Query: 370 DRHVAMKEGVK-VSATGVKDEIQIEGNDIELVAKCAALIQQKCKVRNKDIRKFLDGVYVS 546
            R V M  GV  V++   KDE+ IEGN +E V+  AALIQQ   V+NKDIRKFLDG+YVS
Sbjct: 121 IRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVS 180

Query: 547 ETCKCE 564
           E    E
Sbjct: 181 EKTTVE 186

>sp|P51410|RL9_MOUSE 60S ribosomal protein L9
          Length = 192

 Score =  200 bits (509), Expect = 2e-51
 Identities = 101/183 (55%), Positives = 134/183 (73%), Gaps = 4/183 (2%)
 Frame = +1

Query: 13  MRTILSEQVVEVPEGIKVTSNARVVRVAGKRGLLKRDFKHLAVEIHVV---KNTIKVVKY 183
           M+TILS Q V++PE +++T   R V V G RG L+RDF H+ VE+ ++   K  ++V K+
Sbjct: 1   MKTILSNQTVDIPENVEITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 184 FGGKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVIAEKNDAITIRNFLGE 363
           +G +K++A VRT+ SH++NMI GVT GF+ KM++VYAHFPIN+VI E    + IRNFLGE
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120

Query: 364 KLDRHVAMKEGVKVSAT-GVKDEIQIEGNDIELVAKCAALIQQKCKVRNKDIRKFLDGVY 540
           K  R V M+ GV  S +   KDE+ +EGNDIELV+  AALIQQ   V+NKDIRKFLDG+Y
Sbjct: 121 KYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180

Query: 541 VSE 549
           VSE
Sbjct: 181 VSE 183

>sp|P17077|RL9_RAT 60S ribosomal protein L9
          Length = 192

 Score =  199 bits (507), Expect = 3e-51
 Identities = 101/183 (55%), Positives = 133/183 (72%), Gaps = 4/183 (2%)
 Frame = +1

Query: 13  MRTILSEQVVEVPEGIKVTSNARVVRVAGKRGLLKRDFKHLAVEIHVV---KNTIKVVKY 183
           M+TILS Q V++PE + +T   R V V G RG L+RDF H+ VE+ ++   K  ++V K+
Sbjct: 1   MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 184 FGGKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVIAEKNDAITIRNFLGE 363
           +G +K++A VRT+ SH++NMI GVT GF+ KM++VYAHFPIN+VI E    + IRNFLGE
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120

Query: 364 KLDRHVAMKEGVKVSAT-GVKDEIQIEGNDIELVAKCAALIQQKCKVRNKDIRKFLDGVY 540
           K  R V M+ GV  S +   KDE+ +EGNDIELV+  AALIQQ   V+NKDIRKFLDG+Y
Sbjct: 121 KYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180

Query: 541 VSE 549
           VSE
Sbjct: 181 VSE 183

>sp|P32969|RL9_HUMAN 60S ribosomal protein L9
          Length = 192

 Score =  199 bits (507), Expect = 3e-51
 Identities = 101/183 (55%), Positives = 133/183 (72%), Gaps = 4/183 (2%)
 Frame = +1

Query: 13  MRTILSEQVVEVPEGIKVTSNARVVRVAGKRGLLKRDFKHLAVEIHVV---KNTIKVVKY 183
           M+TILS Q V++PE + +T   R V V G RG L+RDF H+ VE+ ++   K  ++V K+
Sbjct: 1   MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 184 FGGKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVIAEKNDAITIRNFLGE 363
           +G +K++A VRT+ SH++NMI GVT GF+ KM++VYAHFPIN+VI E    + IRNFLGE
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120

Query: 364 KLDRHVAMKEGVKVSAT-GVKDEIQIEGNDIELVAKCAALIQQKCKVRNKDIRKFLDGVY 540
           K  R V M+ GV  S +   KDE+ +EGNDIELV+  AALIQQ   V+NKDIRKFLDG+Y
Sbjct: 121 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180

Query: 541 VSE 549
           VSE
Sbjct: 181 VSE 183

>sp|Q5IFJ7|RL9_MACFA 60S ribosomal protein L9
          Length = 192

 Score =  199 bits (506), Expect = 4e-51
 Identities = 100/183 (54%), Positives = 133/183 (72%), Gaps = 4/183 (2%)
 Frame = +1

Query: 13  MRTILSEQVVEVPEGIKVTSNARVVRVAGKRGLLKRDFKHLAVEIHVV---KNTIKVVKY 183
           M+TILS Q V++PE + +T   R V V G RG L+RDF H+ VE+ ++   K  ++V K+
Sbjct: 1   MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60

Query: 184 FGGKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVIAEKNDAITIRNFLGE 363
           +G +K++A +RT+ SH++NMI GVT GF+ KM++VYAHFPIN+VI E    + IRNFLGE
Sbjct: 61  WGNRKELATIRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120

Query: 364 KLDRHVAMKEGVKVSAT-GVKDEIQIEGNDIELVAKCAALIQQKCKVRNKDIRKFLDGVY 540
           K  R V M+ GV  S +   KDE+ +EGNDIELV+  AALIQQ   V+NKDIRKFLDG+Y
Sbjct: 121 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180

Query: 541 VSE 549
           VSE
Sbjct: 181 VSE 183

>sp|Q90YW0|RL9_ICTPU 60S ribosomal protein L9
          Length = 192

 Score =  196 bits (497), Expect = 5e-50
 Identities = 97/183 (53%), Positives = 134/183 (73%), Gaps = 4/183 (2%)
 Frame = +1

Query: 13  MRTILSEQVVEVPEGIKVTSNARVVRVAGKRGLLKRDFKHLAVEIHVV---KNTIKVVKY 183
           M+TILS Q V++P+ + VT   R V V G RG+L+R+F H+ +E+ ++   +  ++V K+
Sbjct: 1   MKTILSTQTVDIPDNVDVTLKGRTVSVKGPRGVLRREFNHINLELRLLGKKQKKLRVDKW 60

Query: 184 FGGKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVIAEKNDAITIRNFLGE 363
           +G +K++A VRT+ SH++NMI GVT GF+ KM++VYAHFPIN+VI E    + IRNFLGE
Sbjct: 61  WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQETGSLVEIRNFLGE 120

Query: 364 KLDRHVAMKEGVKVSATGV-KDEIQIEGNDIELVAKCAALIQQKCKVRNKDIRKFLDGVY 540
           K  R V M+ GV  + +   KDE+ +EGNDIELV+  AALIQQ   V+NKDIRKFLDG+Y
Sbjct: 121 KYIRRVRMRPGVNCALSAAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180

Query: 541 VSE 549
           VSE
Sbjct: 181 VSE 183

>sp|P49210|RL9_ORYSA 60S ribosomal protein L9
          Length = 190

 Score =  193 bits (490), Expect = 3e-49
 Identities = 98/182 (53%), Positives = 135/182 (74%), Gaps = 3/182 (1%)
 Frame = +1

Query: 13  MRTILSEQVVEVPEGIKVTSNARVVRVAGKRGLLKRDFKHLAVEIHVVKN--TIKVVKYF 186
           M+TIL+ + +E+PEG+ V   A+VV V G RG L R+FKHL ++  +++    ++V  +F
Sbjct: 1   MKTILASETMEIPEGLTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWF 60

Query: 187 GGKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVIAEKNDAITIRNFLGEK 366
           G ++ +AA+RT  SH++N+ITGVT+G++ KM+ VYAHFPIN  I   N AI IRNFLGEK
Sbjct: 61  GTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEK 120

Query: 367 LDRHVAMKEGVKV-SATGVKDEIQIEGNDIELVAKCAALIQQKCKVRNKDIRKFLDGVYV 543
             R V M EGV +  +  VKDE+ ++GNDIELV++ AALI QKC V+NKDIRKFLDG+YV
Sbjct: 121 KVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 180

Query: 544 SE 549
           S+
Sbjct: 181 SD 182

>sp|P30707|RL9_PEA 60S ribosomal protein L9 (Gibberellin-regulated protein GA)
          Length = 193

 Score =  191 bits (486), Expect = 9e-49
 Identities = 96/185 (51%), Positives = 131/185 (70%), Gaps = 6/185 (3%)
 Frame = +1

Query: 13  MRTILSEQVVEVPEGIKVTSNARVVRVAGKRGLLKRDFKHLAVEIHVV-----KNTIKVV 177
           M+TILS + + +P+G+ +  NA+V+ V G RG L RDFKHL ++  ++     K  +K+ 
Sbjct: 1   MKTILSSETMNIPDGVTIKVNAKVIEVEGPRGKLVRDFKHLNLDFDLITDENGKKKLKID 60

Query: 178 KYFGGKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVIAEKNDAITIRNFL 357
            +FG +K  AA+RT  SH+EN+ITGVT+GF+ KM+ VYA FPIN  I   N +I IRNFL
Sbjct: 61  AWFGSRKTSAAIRTALSHVENLITGVTKGFRYKMRFVYADFPINASITNDNKSIEIRNFL 120

Query: 358 GEKLDRHVAMKEGVK-VSATGVKDEIQIEGNDIELVAKCAALIQQKCKVRNKDIRKFLDG 534
           GEK  R V + +GV  + +  VKDE+ ++GNDIELV++  ALI QKC V+ KDIRKFLDG
Sbjct: 121 GEKKVRKVDLLDGVSIIRSEKVKDEVVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDG 180

Query: 535 VYVSE 549
           +YVSE
Sbjct: 181 IYVSE 185

>sp|Q95Y90|RL9_CAEEL 60S ribosomal protein L9
          Length = 189

 Score =  190 bits (482), Expect = 3e-48
 Identities = 95/181 (52%), Positives = 132/181 (72%), Gaps = 2/181 (1%)
 Frame = +1

Query: 13  MRTILSEQVVEVPEGIKVTSNARVVRVAGKRGLLKRDFKHLAVEIHVV-KNTIKVVKYFG 189
           M+ I S   V  PEG+  T   R+V V G RG +++DF+HL +E+  + K+T++V K+FG
Sbjct: 1   MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFG 60

Query: 190 GKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVIAEKNDAITIRNFLGEKL 369
            +K++AA+RTV SHI+NMI GVT GF+ KM++VYAHFPIN+ + + N  + IRNFLGEK+
Sbjct: 61  VRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKI 120

Query: 370 DRHVAMKEGVKVS-ATGVKDEIQIEGNDIELVAKCAALIQQKCKVRNKDIRKFLDGVYVS 546
            R V + EGV  + +T  KDEI +EGND++ V++ AA IQQ   V+ KDIRKFLDG+YVS
Sbjct: 121 VRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAVKEKDIRKFLDGIYVS 180

Query: 547 E 549
           E
Sbjct: 181 E 181

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,151,044
Number of Sequences: 369166
Number of extensions: 1138438
Number of successful extensions: 3375
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3317
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4553075865
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00356

  1. Dr_sW_009_H15
  2. Dr_sW_017_I07
  3. Dr_sW_009_N14