Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_I07
(590 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P50882|RL9_DROME 60S ribosomal protein L9 210 2e-54
sp|Q963B7|RL9_SPOFR 60S ribosomal protein L9 202 7e-52
sp|P51410|RL9_MOUSE 60S ribosomal protein L9 200 2e-51
sp|P17077|RL9_RAT 60S ribosomal protein L9 199 3e-51
sp|P32969|RL9_HUMAN 60S ribosomal protein L9 199 3e-51
sp|Q5IFJ7|RL9_MACFA 60S ribosomal protein L9 199 4e-51
sp|Q90YW0|RL9_ICTPU 60S ribosomal protein L9 196 5e-50
sp|P49210|RL9_ORYSA 60S ribosomal protein L9 193 3e-49
sp|P30707|RL9_PEA 60S ribosomal protein L9 (Gibberellin-reg... 191 9e-49
sp|Q95Y90|RL9_CAEEL 60S ribosomal protein L9 190 3e-48
>sp|P50882|RL9_DROME 60S ribosomal protein L9
Length = 190
Score = 210 bits (535), Expect = 2e-54
Identities = 113/181 (62%), Positives = 137/181 (75%), Gaps = 2/181 (1%)
Frame = +3
Query: 6 MRTILSEQVVEVPEGIKVTSNARVVRVAGKRGLLKRDFKHLAVEIHVV-KNTIKVVKYFG 182
MRTI S Q V++P+ IK + ARVV + G RG LKR FKHLA+++++ K T+KV K+FG
Sbjct: 1 MRTINSNQCVKIPKDIKASVKARVVTITGTRGTLKRSFKHLALDMYMPDKRTLKVEKWFG 60
Query: 183 GKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVIAEKNDAITIRNFLGEKL 362
KK++AAVRTV SHIENMI GVT GF+ KM+AVYAHFPIN V +E N I IRNFLGEK
Sbjct: 61 TKKELAAVRTVCSHIENMIKGVTFGFQYKMRAVYAHFPINCVTSENNTVIEIRNFLGEKY 120
Query: 363 DRHVAMKEGVK-VSATGVKDEIQIEGNDIELVAKCAALIQQKCKVRNKDIRKFLDGVYVS 539
R V M GV V++T KDE+ +EGNDIE V+ AALIQQ V+NKDIRKFLDG+YVS
Sbjct: 121 IRRVEMAPGVTVVNSTAQKDELIVEGNDIESVSGSAALIQQSTTVKNKDIRKFLDGLYVS 180
Query: 540 E 542
E
Sbjct: 181 E 181
>sp|Q963B7|RL9_SPOFR 60S ribosomal protein L9
Length = 190
Score = 202 bits (513), Expect = 7e-52
Identities = 108/186 (58%), Positives = 136/186 (73%), Gaps = 2/186 (1%)
Frame = +3
Query: 6 MRTILSEQVVEVPEGIKVTSNARVVRVAGKRGLLKRDFKHLAVEIHVVK-NTIKVVKYFG 182
M+ I++ Q V++PEG+ V +R+V V G RG+LKR+FKHLAV+I +V +KV K+FG
Sbjct: 1 MKQIVANQKVKIPEGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRVLKVEKWFG 60
Query: 183 GKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVIAEKNDAITIRNFLGEKL 362
KK++AAVRTV SH+ENMI GVT+GF+ KM++VYAHFPIN V E N I IRNFLGEK
Sbjct: 61 SKKELAAVRTVCSHVENMIKGVTKGFQYKMRSVYAHFPINCVTTEGNSVIEIRNFLGEKY 120
Query: 363 DRHVAMKEGVK-VSATGVKDEIQIEGNDIELVAKCAALIQQKCKVRNKDIRKFLDGVYVS 539
R V M GV V++ KDE+ IEGN +E V+ AALIQQ V+NKDIRKFLDG+YVS
Sbjct: 121 IRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVS 180
Query: 540 ETCKCE 557
E E
Sbjct: 181 EKTTVE 186
>sp|P51410|RL9_MOUSE 60S ribosomal protein L9
Length = 192
Score = 200 bits (509), Expect = 2e-51
Identities = 101/183 (55%), Positives = 134/183 (73%), Gaps = 4/183 (2%)
Frame = +3
Query: 6 MRTILSEQVVEVPEGIKVTSNARVVRVAGKRGLLKRDFKHLAVEIHVV---KNTIKVVKY 176
M+TILS Q V++PE +++T R V V G RG L+RDF H+ VE+ ++ K ++V K+
Sbjct: 1 MKTILSNQTVDIPENVEITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60
Query: 177 FGGKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVIAEKNDAITIRNFLGE 356
+G +K++A VRT+ SH++NMI GVT GF+ KM++VYAHFPIN+VI E + IRNFLGE
Sbjct: 61 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120
Query: 357 KLDRHVAMKEGVKVSAT-GVKDEIQIEGNDIELVAKCAALIQQKCKVRNKDIRKFLDGVY 533
K R V M+ GV S + KDE+ +EGNDIELV+ AALIQQ V+NKDIRKFLDG+Y
Sbjct: 121 KYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180
Query: 534 VSE 542
VSE
Sbjct: 181 VSE 183
>sp|P17077|RL9_RAT 60S ribosomal protein L9
Length = 192
Score = 199 bits (507), Expect = 3e-51
Identities = 101/183 (55%), Positives = 133/183 (72%), Gaps = 4/183 (2%)
Frame = +3
Query: 6 MRTILSEQVVEVPEGIKVTSNARVVRVAGKRGLLKRDFKHLAVEIHVV---KNTIKVVKY 176
M+TILS Q V++PE + +T R V V G RG L+RDF H+ VE+ ++ K ++V K+
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60
Query: 177 FGGKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVIAEKNDAITIRNFLGE 356
+G +K++A VRT+ SH++NMI GVT GF+ KM++VYAHFPIN+VI E + IRNFLGE
Sbjct: 61 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120
Query: 357 KLDRHVAMKEGVKVSAT-GVKDEIQIEGNDIELVAKCAALIQQKCKVRNKDIRKFLDGVY 533
K R V M+ GV S + KDE+ +EGNDIELV+ AALIQQ V+NKDIRKFLDG+Y
Sbjct: 121 KYIRRVRMRTGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180
Query: 534 VSE 542
VSE
Sbjct: 181 VSE 183
>sp|P32969|RL9_HUMAN 60S ribosomal protein L9
Length = 192
Score = 199 bits (507), Expect = 3e-51
Identities = 101/183 (55%), Positives = 133/183 (72%), Gaps = 4/183 (2%)
Frame = +3
Query: 6 MRTILSEQVVEVPEGIKVTSNARVVRVAGKRGLLKRDFKHLAVEIHVV---KNTIKVVKY 176
M+TILS Q V++PE + +T R V V G RG L+RDF H+ VE+ ++ K ++V K+
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60
Query: 177 FGGKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVIAEKNDAITIRNFLGE 356
+G +K++A VRT+ SH++NMI GVT GF+ KM++VYAHFPIN+VI E + IRNFLGE
Sbjct: 61 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120
Query: 357 KLDRHVAMKEGVKVSAT-GVKDEIQIEGNDIELVAKCAALIQQKCKVRNKDIRKFLDGVY 533
K R V M+ GV S + KDE+ +EGNDIELV+ AALIQQ V+NKDIRKFLDG+Y
Sbjct: 121 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180
Query: 534 VSE 542
VSE
Sbjct: 181 VSE 183
>sp|Q5IFJ7|RL9_MACFA 60S ribosomal protein L9
Length = 192
Score = 199 bits (506), Expect = 4e-51
Identities = 100/183 (54%), Positives = 133/183 (72%), Gaps = 4/183 (2%)
Frame = +3
Query: 6 MRTILSEQVVEVPEGIKVTSNARVVRVAGKRGLLKRDFKHLAVEIHVV---KNTIKVVKY 176
M+TILS Q V++PE + +T R V V G RG L+RDF H+ VE+ ++ K ++V K+
Sbjct: 1 MKTILSNQTVDIPENVDITLKGRTVIVKGPRGTLRRDFNHINVELSLLGKKKKRLRVDKW 60
Query: 177 FGGKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVIAEKNDAITIRNFLGE 356
+G +K++A +RT+ SH++NMI GVT GF+ KM++VYAHFPIN+VI E + IRNFLGE
Sbjct: 61 WGNRKELATIRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGE 120
Query: 357 KLDRHVAMKEGVKVSAT-GVKDEIQIEGNDIELVAKCAALIQQKCKVRNKDIRKFLDGVY 533
K R V M+ GV S + KDE+ +EGNDIELV+ AALIQQ V+NKDIRKFLDG+Y
Sbjct: 121 KYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180
Query: 534 VSE 542
VSE
Sbjct: 181 VSE 183
>sp|Q90YW0|RL9_ICTPU 60S ribosomal protein L9
Length = 192
Score = 196 bits (497), Expect = 5e-50
Identities = 97/183 (53%), Positives = 134/183 (73%), Gaps = 4/183 (2%)
Frame = +3
Query: 6 MRTILSEQVVEVPEGIKVTSNARVVRVAGKRGLLKRDFKHLAVEIHVV---KNTIKVVKY 176
M+TILS Q V++P+ + VT R V V G RG+L+R+F H+ +E+ ++ + ++V K+
Sbjct: 1 MKTILSTQTVDIPDNVDVTLKGRTVSVKGPRGVLRREFNHINLELRLLGKKQKKLRVDKW 60
Query: 177 FGGKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVIAEKNDAITIRNFLGE 356
+G +K++A VRT+ SH++NMI GVT GF+ KM++VYAHFPIN+VI E + IRNFLGE
Sbjct: 61 WGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQETGSLVEIRNFLGE 120
Query: 357 KLDRHVAMKEGVKVSATGV-KDEIQIEGNDIELVAKCAALIQQKCKVRNKDIRKFLDGVY 533
K R V M+ GV + + KDE+ +EGNDIELV+ AALIQQ V+NKDIRKFLDG+Y
Sbjct: 121 KYIRRVRMRPGVNCALSAAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIY 180
Query: 534 VSE 542
VSE
Sbjct: 181 VSE 183
>sp|P49210|RL9_ORYSA 60S ribosomal protein L9
Length = 190
Score = 193 bits (490), Expect = 3e-49
Identities = 98/182 (53%), Positives = 135/182 (74%), Gaps = 3/182 (1%)
Frame = +3
Query: 6 MRTILSEQVVEVPEGIKVTSNARVVRVAGKRGLLKRDFKHLAVEIHVVKN--TIKVVKYF 179
M+TIL+ + +E+PEG+ V A+VV V G RG L R+FKHL ++ +++ ++V +F
Sbjct: 1 MKTILASETMEIPEGLTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWF 60
Query: 180 GGKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVIAEKNDAITIRNFLGEK 359
G ++ +AA+RT SH++N+ITGVT+G++ KM+ VYAHFPIN I N AI IRNFLGEK
Sbjct: 61 GTRRTMAAIRTAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEK 120
Query: 360 LDRHVAMKEGVKV-SATGVKDEIQIEGNDIELVAKCAALIQQKCKVRNKDIRKFLDGVYV 536
R V M EGV + + VKDE+ ++GNDIELV++ AALI QKC V+NKDIRKFLDG+YV
Sbjct: 121 KVRKVDMLEGVTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYV 180
Query: 537 SE 542
S+
Sbjct: 181 SD 182
>sp|P30707|RL9_PEA 60S ribosomal protein L9 (Gibberellin-regulated protein GA)
Length = 193
Score = 191 bits (486), Expect = 9e-49
Identities = 96/185 (51%), Positives = 131/185 (70%), Gaps = 6/185 (3%)
Frame = +3
Query: 6 MRTILSEQVVEVPEGIKVTSNARVVRVAGKRGLLKRDFKHLAVEIHVV-----KNTIKVV 170
M+TILS + + +P+G+ + NA+V+ V G RG L RDFKHL ++ ++ K +K+
Sbjct: 1 MKTILSSETMNIPDGVTIKVNAKVIEVEGPRGKLVRDFKHLNLDFDLITDENGKKKLKID 60
Query: 171 KYFGGKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVIAEKNDAITIRNFL 350
+FG +K AA+RT SH+EN+ITGVT+GF+ KM+ VYA FPIN I N +I IRNFL
Sbjct: 61 AWFGSRKTSAAIRTALSHVENLITGVTKGFRYKMRFVYADFPINASITNDNKSIEIRNFL 120
Query: 351 GEKLDRHVAMKEGVK-VSATGVKDEIQIEGNDIELVAKCAALIQQKCKVRNKDIRKFLDG 527
GEK R V + +GV + + VKDE+ ++GNDIELV++ ALI QKC V+ KDIRKFLDG
Sbjct: 121 GEKKVRKVDLLDGVSIIRSEKVKDEVVLDGNDIELVSRSCALINQKCHVKKKDIRKFLDG 180
Query: 528 VYVSE 542
+YVSE
Sbjct: 181 IYVSE 185
>sp|Q95Y90|RL9_CAEEL 60S ribosomal protein L9
Length = 189
Score = 190 bits (482), Expect = 3e-48
Identities = 95/181 (52%), Positives = 132/181 (72%), Gaps = 2/181 (1%)
Frame = +3
Query: 6 MRTILSEQVVEVPEGIKVTSNARVVRVAGKRGLLKRDFKHLAVEIHVV-KNTIKVVKYFG 182
M+ I S V PEG+ T R+V V G RG +++DF+HL +E+ + K+T++V K+FG
Sbjct: 1 MKLIESNDTVVFPEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFG 60
Query: 183 GKKDIAAVRTVASHIENMITGVTQGFKKKMKAVYAHFPINLVIAEKNDAITIRNFLGEKL 362
+K++AA+RTV SHI+NMI GVT GF+ KM++VYAHFPIN+ + + N + IRNFLGEK+
Sbjct: 61 VRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKI 120
Query: 363 DRHVAMKEGVKVS-ATGVKDEIQIEGNDIELVAKCAALIQQKCKVRNKDIRKFLDGVYVS 539
R V + EGV + +T KDEI +EGND++ V++ AA IQQ V+ KDIRKFLDG+YVS
Sbjct: 121 VRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAVKEKDIRKFLDGIYVS 180
Query: 540 E 542
E
Sbjct: 181 E 181
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,472,939
Number of Sequences: 369166
Number of extensions: 1128105
Number of successful extensions: 3368
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3310
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4455160255
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)