Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_N14
(239 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q10232|RL9A_SCHPO 60S ribosomal protein L9-A 43 3e-04
sp|O74905|RL9B_SCHPO 60S ribosomal protein L9-B 43 3e-04
sp|P51401|RL9B_YEAST 60S ribosomal protein L9-B (L8) (YL11)... 40 0.002
sp|P05738|RL9A_YEAST 60S ribosomal protein L9-A (L8) (YL11)... 40 0.002
sp|Q963B7|RL9_SPOFR 60S ribosomal protein L9 39 0.003
sp|P51410|RL9_MOUSE 60S ribosomal protein L9 38 0.008
sp|P17077|RL9_RAT 60S ribosomal protein L9 38 0.008
sp|P32969|RL9_HUMAN 60S ribosomal protein L9 38 0.008
sp|Q90YW0|RL9_ICTPU 60S ribosomal protein L9 38 0.008
sp|Q5IFJ7|RL9_MACFA 60S ribosomal protein L9 38 0.008
>sp|Q10232|RL9A_SCHPO 60S ribosomal protein L9-A
Length = 190
Score = 42.7 bits (99), Expect = 3e-04
Identities = 21/33 (63%), Positives = 24/33 (72%)
Frame = +3
Query: 93 LKEVSDSNLKELEISKVRNKDIRKFLDGVYVSE 191
L+ VS S +I VRNKDIRKFLDG+YVSE
Sbjct: 149 LENVSQSAANIKQICNVRNKDIRKFLDGIYVSE 181
>sp|O74905|RL9B_SCHPO 60S ribosomal protein L9-B
Length = 189
Score = 42.7 bits (99), Expect = 3e-04
Identities = 21/33 (63%), Positives = 24/33 (72%)
Frame = +3
Query: 93 LKEVSDSNLKELEISKVRNKDIRKFLDGVYVSE 191
L+ VS S +I VRNKDIRKFLDG+YVSE
Sbjct: 149 LENVSQSAANIKQICNVRNKDIRKFLDGIYVSE 181
>sp|P51401|RL9B_YEAST 60S ribosomal protein L9-B (L8) (YL11) (RP25)
Length = 191
Score = 39.7 bits (91), Expect = 0.002
Identities = 18/32 (56%), Positives = 25/32 (78%)
Frame = +3
Query: 93 LKEVSDSNLKELEISKVRNKDIRKFLDGVYVS 188
+++VS + +I +VRNKDIRKFLDG+YVS
Sbjct: 151 VEDVSQNAADLQQICRVRNKDIRKFLDGIYVS 182
>sp|P05738|RL9A_YEAST 60S ribosomal protein L9-A (L8) (YL11) (RP25)
Length = 191
Score = 39.7 bits (91), Expect = 0.002
Identities = 18/32 (56%), Positives = 25/32 (78%)
Frame = +3
Query: 93 LKEVSDSNLKELEISKVRNKDIRKFLDGVYVS 188
+++VS + +I +VRNKDIRKFLDG+YVS
Sbjct: 151 VEDVSQNAADLQQICRVRNKDIRKFLDGIYVS 182
>sp|Q963B7|RL9_SPOFR 60S ribosomal protein L9
Length = 190
Score = 39.3 bits (90), Expect = 0.003
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = +3
Query: 93 LKEVSDSNLKELEISKVRNKDIRKFLDGVYVSETCKCE 206
L++VS S + + V+NKDIRKFLDG+YVSE E
Sbjct: 149 LEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVE 186
>sp|P51410|RL9_MOUSE 60S ribosomal protein L9
Length = 192
Score = 37.7 bits (86), Expect = 0.008
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = +3
Query: 102 VSDSNLKELEISKVRNKDIRKFLDGVYVSE 191
VS+S + + V+NKDIRKFLDG+YVSE
Sbjct: 154 VSNSAALIQQATTVKNKDIRKFLDGIYVSE 183
>sp|P17077|RL9_RAT 60S ribosomal protein L9
Length = 192
Score = 37.7 bits (86), Expect = 0.008
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = +3
Query: 102 VSDSNLKELEISKVRNKDIRKFLDGVYVSE 191
VS+S + + V+NKDIRKFLDG+YVSE
Sbjct: 154 VSNSAALIQQATTVKNKDIRKFLDGIYVSE 183
>sp|P32969|RL9_HUMAN 60S ribosomal protein L9
Length = 192
Score = 37.7 bits (86), Expect = 0.008
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = +3
Query: 102 VSDSNLKELEISKVRNKDIRKFLDGVYVSE 191
VS+S + + V+NKDIRKFLDG+YVSE
Sbjct: 154 VSNSAALIQQATTVKNKDIRKFLDGIYVSE 183
>sp|Q90YW0|RL9_ICTPU 60S ribosomal protein L9
Length = 192
Score = 37.7 bits (86), Expect = 0.008
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = +3
Query: 102 VSDSNLKELEISKVRNKDIRKFLDGVYVSE 191
VS+S + + V+NKDIRKFLDG+YVSE
Sbjct: 154 VSNSAALIQQATTVKNKDIRKFLDGIYVSE 183
>sp|Q5IFJ7|RL9_MACFA 60S ribosomal protein L9
Length = 192
Score = 37.7 bits (86), Expect = 0.008
Identities = 18/30 (60%), Positives = 23/30 (76%)
Frame = +3
Query: 102 VSDSNLKELEISKVRNKDIRKFLDGVYVSE 191
VS+S + + V+NKDIRKFLDG+YVSE
Sbjct: 154 VSNSAALIQQATTVKNKDIRKFLDGIYVSE 183
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,909,098
Number of Sequences: 369166
Number of extensions: 312498
Number of successful extensions: 1218
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 68,354,980
effective HSP length: 50
effective length of database: 59,118,230
effective search space used: 1714428670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)