Planaria EST Database

DrC_00355

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00355
         (1076 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q99150|SRP54_YARLI  Signal recognition particle 54 kDa pr...    31   5.3  
sp|Q9MI97|CYB_TYPNA  Cytochrome b                                  31   7.0  

>sp|Q99150|SRP54_YARLI Signal recognition particle 54 kDa protein homolog (SRP54)
          Length = 536

 Score = 31.2 bits (69), Expect = 5.3
 Identities = 36/127 (28%), Positives = 54/127 (42%), Gaps = 21/127 (16%)
 Frame = +3

Query: 480 IILVGQSDRVD--------HFIKTLIKLVIGTCPMYKQTIQSDNADALKS---------- 605
           II +G  + +          FI  L  L IG      +T+QS N D  K+          
Sbjct: 272 IIFIGTGEHIHDLEAFSPKQFISKL--LGIGDLQGLMETMQSLNLDQKKTMEHIQEGIFT 329

Query: 606 --DLRDFLGNLVENGARCAYLPEIDNIPPSLGSLLHALSHELNA-LYKEMIYIFSLKISL 776
             DLRD +GN+++ G+    L  I  + P L  +  ++S E      K MIYI     S+
Sbjct: 330 LADLRDQMGNMLKMGS----LSSIAGMIPGLSGMASSISDEEGTRRIKRMIYILD---SM 382

Query: 777 GNNKLES 797
              +L+S
Sbjct: 383 NQKELDS 389

>sp|Q9MI97|CYB_TYPNA Cytochrome b
          Length = 380

 Score = 30.8 bits (68), Expect = 7.0
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +3

Query: 390 PAQTEISWKILNNTLAKQILRKQPIEKPSVIILVGQSDRVDHFIKTLIKL 539
           P    + W I+ NTL    +  QP+E P   IL+GQ     +FI  L+ L
Sbjct: 320 PLSQLMFWSIIANTLVLTWIGGQPVEDP--FILIGQISSALYFILFLVLL 367

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,107,632
Number of Sequences: 369166
Number of extensions: 2160851
Number of successful extensions: 5185
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5184
length of database: 68,354,980
effective HSP length: 112
effective length of database: 47,664,660
effective search space used: 11725506360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00355

  1. Dr_sW_009_H08
  2. Dr_sW_001_J06