Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_H08
(796 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9MI97|CYB_TYPNA Cytochrome b 31 4.4
sp|Q9XSB5|ESR2_BOVIN Estrogen receptor beta (ER-beta) 30 7.6
sp|P47043|ZAP1_YEAST Zinc-responsive transcriptional regula... 30 9.9
sp|O42457|CP1A1_SPAAU Cytochrome P450 1A1 (CYPIA1) 30 9.9
sp|O87444|CLPB_PLEBO Chaperone clpB 30 9.9
>sp|Q9MI97|CYB_TYPNA Cytochrome b
Length = 380
Score = 30.8 bits (68), Expect = 4.4
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +3
Query: 390 PAQTEISWKILNNTLAKQILRKQPIEKPSVIILVGQSDRVDHFIKTLIKL 539
P + W I+ NTL + QP+E P IL+GQ +FI L+ L
Sbjct: 320 PLSQLMFWSIIANTLVLTWIGGQPVEDP--FILIGQISSALYFILFLVLL 367
>sp|Q9XSB5|ESR2_BOVIN Estrogen receptor beta (ER-beta)
Length = 527
Score = 30.0 bits (66), Expect = 7.6
Identities = 26/114 (22%), Positives = 54/114 (47%), Gaps = 6/114 (5%)
Frame = +3
Query: 306 LFLLWENFYPSSTVPRYSQGFIKLIDAFPAQTE-ISWKILNNTLAKQILRKQPIEKPSVI 482
+ LL + YPS+T P+ + KL A T+ + W I + ++ Q +Q + +++
Sbjct: 400 MILLNSSMYPSATAPQEADSGRKLTHLLNAVTDALVWVIAKSGMSSQ---QQSMRLANLL 456
Query: 483 ILV-----GQSDRVDHFIKTLIKLVIGTCPMYKQTIQSDNADALKSDLSDFLGN 629
+L+ + ++H + K V+ P+Y ++ NA L+ + S G+
Sbjct: 457 MLLSHVRHASNKGMEHLLNMKCKNVV---PVYDLLLEMLNAHTLRGNKSLVTGS 507
>sp|P47043|ZAP1_YEAST Zinc-responsive transcriptional regulator ZAP1
Length = 880
Score = 29.6 bits (65), Expect = 9.9
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
Frame = -2
Query: 168 FPHIYNYHCPILPNLNLHD----------HNHFFS*VYEAS*LFSFLH*FYCDFESDYPC 19
F + N H ++PN NLHD HNH + S L S L CD D PC
Sbjct: 237 FTDVKNDH--LMPNFNLHDQYCNSTNHDSHNHNNTVPDSFSQLMSHLSEIDCDLTCDTPC 294
>sp|O42457|CP1A1_SPAAU Cytochrome P450 1A1 (CYPIA1)
Length = 521
Score = 29.6 bits (65), Expect = 9.9
Identities = 17/87 (19%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Frame = +3
Query: 492 GQSDRVDHFIKTLIKLVIGTCPMYKQTIQSDNADALKS-DLSDFLGNLVGNGARCAYLPE 668
G D H + ++ ++ G C + + +N + L +LSD G +V +G ++P
Sbjct: 187 GSFDPFRHIVVSVANVICGMC--FGRRYDHNNQELLNLVNLSDEFGQVVASGNPADFIPI 244
Query: 669 IDNIPPSLGSLLHALSHELNALYKEMI 749
+ +P + +++ NA ++++
Sbjct: 245 LQYLPSTSMKKFVSINDRFNAFVQKIV 271
>sp|O87444|CLPB_PLEBO Chaperone clpB
Length = 873
Score = 29.6 bits (65), Expect = 9.9
Identities = 16/52 (30%), Positives = 31/52 (59%)
Frame = +3
Query: 357 SQGFIKLIDAFPAQTEISWKILNNTLAKQILRKQPIEKPSVIILVGQSDRVD 512
++GF + A P + I + L T+AK+ILR E ++ + VG+++R++
Sbjct: 811 AEGFDPVYGARPLKRAIQ-RELETTIAKEILRSNFTEGDTIFVDVGETERLE 861
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,026,975
Number of Sequences: 369166
Number of extensions: 1600218
Number of successful extensions: 3792
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3791
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7473924075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)