Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_J06
(785 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q99150|SRP54_YARLI Signal recognition particle 54 kDa pr... 33 0.89
sp|Q9MI97|CYB_TYPNA Cytochrome b 31 3.4
sp|P52978|NODQ_RHITR NodQ bifunctional enzyme (Nodulation p... 31 4.4
sp|Q9UTR7|MCP3_SCHPO Meiotic coiled-coil protein 3 30 7.5
sp|Q8TE73|DYH5_HUMAN Ciliary dynein heavy chain 5 (Axonemal... 30 9.8
>sp|Q99150|SRP54_YARLI Signal recognition particle 54 kDa protein homolog (SRP54)
Length = 536
Score = 33.1 bits (74), Expect = 0.89
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 13/100 (13%)
Frame = +3
Query: 246 LVIGTCPMYKQTIQSDNADALKS------------DLRDFLGNLVENGGRCAYLPEIDNI 389
L IG +T+QS N D K+ DLRD +GN+++ G L I +
Sbjct: 297 LGIGDLQGLMETMQSLNLDQKKTMEHIQEGIFTLADLRDQMGNMLKMGS----LSSIAGM 352
Query: 390 PPSLGSLLHALSDELNA-LYKEMIYIFSLKISLGNNKLES 506
P L + ++SDE K MIYI S+ +L+S
Sbjct: 353 IPGLSGMASSISDEEGTRRIKRMIYILD---SMNQKELDS 389
>sp|Q9MI97|CYB_TYPNA Cytochrome b
Length = 380
Score = 31.2 bits (69), Expect = 3.4
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +3
Query: 99 PAQTEISWKILNNTLAKQLLRKQPIEKPSVIILVGQSGRVDHFIKTLIKL 248
P + W I+ NTL + QP+E P IL+GQ +FI L+ L
Sbjct: 320 PLSQLMFWSIIANTLVLTWIGGQPVEDP--FILIGQISSALYFILFLVLL 367
>sp|P52978|NODQ_RHITR NodQ bifunctional enzyme (Nodulation protein Q) [Includes: Sulfate
adenylyltransferase subunit 1 (Sulfate adenylate
transferase) (SAT) (ATP-sulfurylase large subunit);
Adenylyl-sulfate kinase (APS kinase) (ATP
adenosine-5'-phosphosulfate 3'-phosphotransferase)]
Length = 632
Score = 30.8 bits (68), Expect = 4.4
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Frame = +3
Query: 114 ISWKILN-NTLAKQLLRKQPIEKPSVIILVGQSGRVDHFIKTLIKLVIGTCPMYKQTIQS 290
+ W+ L+ + A+ L+ Q KP+V+ L G SG I ++ ++ TC + +
Sbjct: 439 VHWQALDVDKAARSALKNQ---KPAVLWLTGLSGSGKSTIANALEALLHTCGKHTYLLDG 495
Query: 291 DNA-DALKSDLRDFLGNLVENGGRCAYLPEI 380
DN L DL + VEN R A + ++
Sbjct: 496 DNVRHGLNRDLGFTAVDRVENIRRVAEVAKL 526
>sp|Q9UTR7|MCP3_SCHPO Meiotic coiled-coil protein 3
Length = 952
Score = 30.0 bits (66), Expect = 7.5
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 11/102 (10%)
Frame = +3
Query: 288 SDNADALKSDLRDFLGNLVENGGRCAYLPE--------IDNIPPSLGSLL---HALSDEL 434
+D D L+ DL++ GNL + GR A+L I+ + SL +L ++L E+
Sbjct: 493 TDERDGLQKDLKNTKGNLDDEIGRSAFLKSQIRDQELTIEKLHDSLETLSQTNNSLQCEI 552
Query: 435 NALYKEMIYIFSLKISLGNNKLESPPKTDKDAENFLKNQLSI 560
+ E+ + S K+S G LE+ K ++ LK QL +
Sbjct: 553 SEKNAELNSVNS-KLSEGRAHLETANKENE----ILKQQLEL 589
>sp|Q8TE73|DYH5_HUMAN Ciliary dynein heavy chain 5 (Axonemal beta dynein heavy chain 5)
(HL1)
Length = 4624
Score = 29.6 bits (65), Expect = 9.8
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Frame = +3
Query: 30 ENFYPSSTVPRYSQGFIKLIDAFPAQTEISWKILNNTLAKQ-----LLRKQPIEKPSVII 194
E YPS T P Y + +D + L T+AKQ L+ +Q K +I
Sbjct: 2548 EYLYPSDTTPEYGSILVPNVD------NVRTDFLIQTIAKQGKAVLLIGEQGTAK--TVI 2599
Query: 195 LVGQSGRVD---HFIKTLIKLVIGTCPMYKQTIQS 290
+ G + D H IK+L T M+++TI+S
Sbjct: 2600 IKGFMSKYDPECHMIKSLNFSSATTPLMFQRTIES 2634
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,065,392
Number of Sequences: 369166
Number of extensions: 1791954
Number of successful extensions: 4668
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4667
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7405750800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)