Planaria EST Database

DrC_00351

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00351
         (1568 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9N2M8|HDC_DROME  Headcase protein [Contains: Headcase sh...   108   4e-23
sp|Q9UBI9|HDC_HUMAN  Headcase protein homolog (hHDC)               75   4e-13
sp|P18160|KYK1_DICDI  Non-receptor tyrosine kinase spore lys...    42   0.004
sp|P14196|AAC2_DICDI  AAC-rich mRNA clone AAC11 protein            34   1.0  
sp|P09547|SWI1_YEAST  Transcription regulatory protein SWI1 ...    34   1.3  
sp|P54683|TAGB_DICDI  Prestalk-specific protein tagB precursor     34   1.3  
sp|P22810|HMOC_DROME  Homeotic protein ocelliless (Orthodent...    34   1.3  
sp|P32770|NRP1_YEAST  Asparagine-rich protein (ARP protein)        34   1.3  
sp|Q02629|NU100_YEAST  Nucleoporin NUP100/NSP100 (Nuclear po...    33   1.8  
sp|P50109|PSP2_YEAST  Protein PSP2 (Mitochondrial regulator ...    32   3.9  

>sp|Q9N2M8|HDC_DROME Headcase protein [Contains: Headcase short protein]
          Length = 1080

 Score =  108 bits (270), Expect = 4e-23
 Identities = 94/390 (24%), Positives = 161/390 (41%), Gaps = 65/390 (16%)
 Frame = +3

Query: 24   GSGTNNVEASYFAGQNNSNRRKLVSNTHPPVSQSGSSFPGNNGNRKN--SLENN------ 179
            G+G N    +  +  N ++   L  N  P V   GS  P NNGN  +  S  NN      
Sbjct: 225  GAGVNGNTKTPLSNNNGNSYAGLTPN--PNVGVIGSGLPHNNGNTASNGSSGNNGSSGVL 282

Query: 180  ------------SMNSYINFTKRFRSRTLSANQMVSNYSIDGHMISPTEFS--------P 299
                        + N+ +    R R+ +LS++   S  +      S  E S        P
Sbjct: 283  QTSALATFSNILNTNNVLGLDLRARAGSLSSSGAGSGSTSPSDSQSSGEISVSPVQQLLP 342

Query: 300  QKKEFLPNSLXXXXXXXXXX---IANGVILHK-----PKSQNRQRHHSASYHGSN----- 440
            Q+++    SL             + NG+ L K     P+ Q +Q+        +N     
Sbjct: 343  QQQQQQQQSLLIQPLGPAFGSNLLQNGLGLSKNLLIAPQQQQQQQLQQQQQQQNNLPALA 402

Query: 441  --------SACKEELVSLNQQNYNL------------AGNIFRQRSDFNNFQRLPFSKQN 560
                    ++ +++ +   Q+N  +               IF +R DF++F  LP ++ N
Sbjct: 403  NISNFKPLASYEQQQLVQQQKNKEVELYSDRVRSTSGCNGIFSRRLDFSSFNLLPKTRLN 462

Query: 561  AYFIQMEDDSCTGNDDTKVFLLSHLSQLGLNTVSCLICASQLVVYDHLPLIDGTFFXXXX 740
            +Y +++ED+   GND+T++F+LS L+Q  ++ V+C++C   L+V+D  PL+DG+FF    
Sbjct: 463  SYQVKIEDEGNHGNDETRLFILSSLAQSQMSRVACILCEEPLLVFDRYPLVDGSFFLSPK 522

Query: 741  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKFLNVVCINCM----HEIV 908
                                                      +L  VC++C+        
Sbjct: 523  QHSSGCIEVKYEGRTL--------------------------YLTCVCMSCLDGTSSSRA 556

Query: 909  VCCQFCHRPWTGAQLLIGSLYTYDIFAAVP 998
            + C+FC  PW G+ L++G++Y YDIFAA+P
Sbjct: 557  INCRFCKEPWDGSSLVLGTMYAYDIFAAMP 586

>sp|Q9UBI9|HDC_HUMAN Headcase protein homolog (hHDC)
          Length = 543

 Score = 75.5 bits (184), Expect = 4e-13
 Identities = 60/243 (24%), Positives = 91/243 (37%), Gaps = 3/243 (1%)
 Frame = +3

Query: 504  FRQRSDFNNF-QRLPFSKQNAYFIQMEDDSCTGN-DDTKVFLLSHLSQLGLNTVSCLICA 677
            F +R D +     +P  K N + ++MEDD+  G  +D + F+L+ LS    N V+C +C 
Sbjct: 343  FLRRLDLSELLTHIPRHKLNTFHVRMEDDAQVGQGEDLRKFILAALSASHRNVVNCALCH 402

Query: 678  SQLVVYDHLPLIDGTFFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 857
              L V++  PL+DGT F                                           
Sbjct: 403  RALPVFEQFPLVDGTLFLSPSRHDEIEYDVPCHLQGRL---------------------- 440

Query: 858  XEKFLNVVCINCMHEI-VVCCQFCHRPWTGAQLLIGSLYTYDIFAAVPXXXXXXXXXXXX 1034
                L  VC++C+  +  + C  C   W G+   +G++YTYDI AA P            
Sbjct: 441  --MHLYAVCVDCLEGVHKIICIKCKSRWDGSWHQLGTMYTYDILAASPCCQARLNCKHCG 498

Query: 1035 XXXXDLTGNSGDXXXXXXXXXXXXXXXXXXXXXXRLIECINCHNRDYHFVKPFTDIFKPI 1214
                D+                             + +C +C N DYHFVKPF+  FK +
Sbjct: 499  KPVIDV-----------------RIGMQYFSEYSNVQQCPHCGNLDYHFVKPFSS-FKVL 540

Query: 1215 GPY 1223
              Y
Sbjct: 541  EAY 543

>sp|P18160|KYK1_DICDI Non-receptor tyrosine kinase spore lysis A (Tyrosine-protein kinase
           1)
          Length = 1584

 Score = 42.4 bits (98), Expect = 0.004
 Identities = 40/163 (24%), Positives = 68/163 (41%)
 Frame = +3

Query: 12  DHSSGSGTNNVEASYFAGQNNSNRRKLVSNTHPPVSQSGSSFPGNNGNRKNSLENNSMNS 191
           ++S+ S TNN   +     NNSN     SN +   + S S+   NN N  N+  NN+ N+
Sbjct: 477 NNSNSSNTNNNNINNTTNNNNSN-----SNNNNNNNNSNSNSNSNNNNINNNNNNNNNNN 531

Query: 192 YINFTKRFRSRTLSANQMVSNYSIDGHMISPTEFSPQKKEFLPNSLXXXXXXXXXXIANG 371
            I  TK+    ++ +    S  S+ G+  S    S      + N+             NG
Sbjct: 532 NIYLTKK---PSIGSTDESSTGSLGGNNSSGNNNSSSGS--IGNNSSIIKQRSPPHSING 586

Query: 372 VILHKPKSQNRQRHHSASYHGSNSACKEELVSLNQQNYNLAGN 500
            ++  P S N   +  +SY+ + +     +  L   N+ + GN
Sbjct: 587 PLMLPPSSTNNNNNIYSSYNSTTAGSSTTI--LPTLNHPIFGN 627

>sp|P14196|AAC2_DICDI AAC-rich mRNA clone AAC11 protein
          Length = 448

 Score = 34.3 bits (77), Expect = 1.0
 Identities = 21/81 (25%), Positives = 37/81 (45%)
 Frame = +3

Query: 12  DHSSGSGTNNVEASYFAGQNNSNRRKLVSNTHPPVSQSGSSFPGNNGNRKNSLENNSMNS 191
           ++++ S  NN+  +     NNSN     SN +   + S ++   NN N  N+  NN+ N+
Sbjct: 275 NNNNNSNINNINNN---NNNNSNNNNNSSNNNNNNNNSTNNNTNNNNNNTNNNTNNNNNN 331

Query: 192 YINFTKRFRSRTLSANQMVSN 254
             N      +   +AN   +N
Sbjct: 332 INNNNNNTNNNNNNANNQNTN 352

>sp|P09547|SWI1_YEAST Transcription regulatory protein SWI1 (SWI/SNF complex component
           SWI1) (Transcription regulatory protein ADR6)
           (Regulatory protein GAM3)
          Length = 1314

 Score = 33.9 bits (76), Expect = 1.3
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
 Frame = +3

Query: 63  GQNNSNRRKLVSNTHPPVSQSGSSFPGNNGNRKNSLENNSMNSYINFTKRF--------R 218
           G NN+N    ++N +       ++    + N  +S  N + NS  N  ++F         
Sbjct: 186 GGNNNNNSTGIANDNVITPHFITNVQSISQNSSSSTPNTNSNSTPNANQQFLPFNNSASN 245

Query: 219 SRTLSANQMVSNYSIDGHMISPTEFSPQKKEFLPNS 326
           +  L++NQ++SNY+    M      S    EF+PN+
Sbjct: 246 NGNLTSNQLISNYAASNSM---DRSSSASNEFVPNT 278


 Score = 31.6 bits (70), Expect = 6.7
 Identities = 12/59 (20%), Positives = 29/59 (49%)
 Frame = +3

Query: 15  HSSGSGTNNVEASYFAGQNNSNRRKLVSNTHPPVSQSGSSFPGNNGNRKNSLENNSMNS 191
           +++ +  N    +     NN+N     +N +P  + + ++  G++ N  N+  NN+ N+
Sbjct: 7   NNNNNNNNTTTTTTTTNNNNTNNNNTNNNNNPANNTNNNNSTGHSSNTNNNTNNNNTNT 65

>sp|P54683|TAGB_DICDI Prestalk-specific protein tagB precursor
          Length = 1905

 Score = 33.9 bits (76), Expect = 1.3
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = +3

Query: 42  VEASYFAGQNNSNRRKLVSNTHPPVSQSGSSFPGNNGNRKNSLENNSMNSYINFTKRFRS 221
           ++ S     NN+N  KL +N +   + + ++   NN N  N+  NN+  + I +   F S
Sbjct: 90  IKPSININNNNNNNNKLNNNNNNNNNNNNNN--NNNNNNNNNNNNNNYYNSIEYYSSFVS 147

Query: 222 RTLSAN 239
           R L +N
Sbjct: 148 RLLKSN 153

>sp|P22810|HMOC_DROME Homeotic protein ocelliless (Orthodenticle protein)
          Length = 671

 Score = 33.9 bits (76), Expect = 1.3
 Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
 Frame = +3

Query: 3   RKFDHSSGSGTNNVEASYFAGQNNSNRRKLVSNTHPPVSQSGSSFPGNNGNRKNSLENNS 182
           R   +++GS +NN   S  +G NNSN+            Q G S  GNN N  ++    S
Sbjct: 164 RSNSNNNGSSSNNNTQS--SGGNNSNKSSQKQGNSQSSQQGGGSSGGNNSNNNSAAAAAS 221

Query: 183 MNSYI---NFTKRFRSRTLSANQMVSNYSIDGH 272
             + +      K   S  LSA    S  SI  H
Sbjct: 222 AAAAVAAAQSIKTHHSSFLSAAAAASAQSIKTH 254

>sp|P32770|NRP1_YEAST Asparagine-rich protein (ARP protein)
          Length = 719

 Score = 33.9 bits (76), Expect = 1.3
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = +3

Query: 27  SGTNNVEASYFAGQNNSNRRKLVSNTHPPVSQSGSSFPGN-NGNRKNSLENNSMNSYINF 203
           SG NN+  +Y    N +N    ++N         ++  GN NGN  NS  NN+ N+  N 
Sbjct: 478 SGNNNIAPNYRYNNNINNNNNNINNMTNNRYNINNNINGNGNGNGNNSNNNNNHNN--NH 535

Query: 204 TKRFRSRTLSANQMVSN 254
                + ++++N   +N
Sbjct: 536 NNNHHNGSINSNSNTNN 552

>sp|Q02629|NU100_YEAST Nucleoporin NUP100/NSP100 (Nuclear pore protein NUP100/NSP100)
          Length = 959

 Score = 33.5 bits (75), Expect = 1.8
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = +3

Query: 117 SQSGSSFPGNNGNRKNSLENNSMNSYINFTKR--FRSRTLSANQMVSNYSIDGHMISPTE 290
           SQ  +S  GN+ N  NS  NN+ + +  FT      S +L  N    N    G  +  T+
Sbjct: 28  SQQPNSLFGNSNNNNNSTSNNAQSGFGGFTSAAGSNSNSLFGNNNTQNNGAFGQSMGATQ 87

Query: 291 FSP 299
            SP
Sbjct: 88  NSP 90

>sp|P50109|PSP2_YEAST Protein PSP2 (Mitochondrial regulator of splicing 15)
          Length = 578

 Score = 32.3 bits (72), Expect = 3.9
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
 Frame = +3

Query: 12  DHSSGSGTNNVEASYFAGQNNSNRRKLVSNTHPPVSQSGSSFPGNNGNRKNSLENNSMNS 191
           +H++ +G       Y  G N S+ +   +N        G S   NN N  N   NN+ NS
Sbjct: 395 NHNNNNGNFRGSNRYRGGPNGSSYKGGHNNRGNRGGYRGGSSYNNNNNNTNDNNNNNNNS 454

Query: 192 YINFT--KRFRSRTLSANQMVSNYSIDGHMISPTEFS 296
             N     R+  R  +   + S+ S+D       +F+
Sbjct: 455 SSNNNNGSRYHDRQNNEEGLTSDSSLDASGNKKNDFT 491

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160,541,456
Number of Sequences: 369166
Number of extensions: 3023161
Number of successful extensions: 7705
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7214
length of database: 68,354,980
effective HSP length: 115
effective length of database: 47,110,455
effective search space used: 19173955185
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00351

  1. Dr_sW_009_F04
  2. Dr_sW_016_A05