Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_F04
(863 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9N2M8|HDC_DROME Headcase protein [Contains: Headcase sh... 83 9e-16
sp|Q9UBI9|HDC_HUMAN Headcase protein homolog (hHDC) 54 4e-07
sp|P18160|KYK1_DICDI Non-receptor tyrosine kinase spore lys... 42 0.002
sp|P14196|AAC2_DICDI AAC-rich mRNA clone AAC11 protein 34 0.46
sp|P09547|SWI1_YEAST Transcription regulatory protein SWI1 ... 34 0.60
sp|P54683|TAGB_DICDI Prestalk-specific protein tagB precursor 34 0.60
sp|P22810|HMOC_DROME Homeotic protein ocelliless (Orthodent... 34 0.60
sp|P32770|NRP1_YEAST Asparagine-rich protein (ARP protein) 34 0.60
sp|Q02629|NU100_YEAST Nucleoporin NUP100/NSP100 (Nuclear po... 33 0.79
sp|P50109|PSP2_YEAST Protein PSP2 (Mitochondrial regulator ... 32 1.8
>sp|Q9N2M8|HDC_DROME Headcase protein [Contains: Headcase short protein]
Length = 1080
Score = 83.2 bits (204), Expect = 9e-16
Identities = 74/296 (25%), Positives = 129/296 (43%), Gaps = 61/296 (20%)
Frame = +3
Query: 24 GSGTNNVEASYFAGQNNSNRRKLVSNTHPPVSQSGSSFPGNNGNRKN--SLENN------ 179
G+G N + + N ++ L N P V GS P NNGN + S NN
Sbjct: 225 GAGVNGNTKTPLSNNNGNSYAGLTPN--PNVGVIGSGLPHNNGNTASNGSSGNNGSSGVL 282
Query: 180 ------------SMNSYINFTKRFRSRTLSANQMVSNYSIDGHMISPTEFS--------P 299
+ N+ + R R+ +LS++ S + S E S P
Sbjct: 283 QTSALATFSNILNTNNVLGLDLRARAGSLSSSGAGSGSTSPSDSQSSGEISVSPVQQLLP 342
Query: 300 QKKEFLPNSLXXXXXXXXXX---IANGVILHK-----PKSQNRQRHHSASYHGSN----- 440
Q+++ SL + NG+ L K P+ Q +Q+ +N
Sbjct: 343 QQQQQQQQSLLIQPLGPAFGSNLLQNGLGLSKNLLIAPQQQQQQQLQQQQQQQNNLPALA 402
Query: 441 --------SACKEELVSLNQQNYNL------------AGNIFRQRSDFNNFQRLPFSKQN 560
++ +++ + Q+N + IF +R DF++F LP ++ N
Sbjct: 403 NISNFKPLASYEQQQLVQQQKNKEVELYSDRVRSTSGCNGIFSRRLDFSSFNLLPKTRLN 462
Query: 561 AYFIQMEDDSCTGNDDTKVFLLSHLSQLGLNTVSCLICASQLVVYDHLPLIDGTFF 728
+Y +++ED+ GND+T++F+LS L+Q ++ V+C++C L+V+D PL+DG+FF
Sbjct: 463 SYQVKIEDEGNHGNDETRLFILSSLAQSQMSRVACILCEEPLLVFDRYPLVDGSFF 518
>sp|Q9UBI9|HDC_HUMAN Headcase protein homolog (hHDC)
Length = 543
Score = 54.3 bits (129), Expect = 4e-07
Identities = 28/77 (36%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Frame = +3
Query: 504 FRQRSDFNNF-QRLPFSKQNAYFIQMEDDSCTGN-DDTKVFLLSHLSQLGLNTVSCLICA 677
F +R D + +P K N + ++MEDD+ G +D + F+L+ LS N V+C +C
Sbjct: 343 FLRRLDLSELLTHIPRHKLNTFHVRMEDDAQVGQGEDLRKFILAALSASHRNVVNCALCH 402
Query: 678 SQLVVYDHLPLIDGTFF 728
L V++ PL+DGT F
Sbjct: 403 RALPVFEQFPLVDGTLF 419
>sp|P18160|KYK1_DICDI Non-receptor tyrosine kinase spore lysis A (Tyrosine-protein kinase
1)
Length = 1584
Score = 42.4 bits (98), Expect = 0.002
Identities = 40/163 (24%), Positives = 68/163 (41%)
Frame = +3
Query: 12 DHSSGSGTNNVEASYFAGQNNSNRRKLVSNTHPPVSQSGSSFPGNNGNRKNSLENNSMNS 191
++S+ S TNN + NNSN SN + + S S+ NN N N+ NN+ N+
Sbjct: 477 NNSNSSNTNNNNINNTTNNNNSN-----SNNNNNNNNSNSNSNSNNNNINNNNNNNNNNN 531
Query: 192 YINFTKRFRSRTLSANQMVSNYSIDGHMISPTEFSPQKKEFLPNSLXXXXXXXXXXIANG 371
I TK+ ++ + S S+ G+ S S + N+ NG
Sbjct: 532 NIYLTKK---PSIGSTDESSTGSLGGNNSSGNNNSSSGS--IGNNSSIIKQRSPPHSING 586
Query: 372 VILHKPKSQNRQRHHSASYHGSNSACKEELVSLNQQNYNLAGN 500
++ P S N + +SY+ + + + L N+ + GN
Sbjct: 587 PLMLPPSSTNNNNNIYSSYNSTTAGSSTTI--LPTLNHPIFGN 627
Score = 30.0 bits (66), Expect = 8.7
Identities = 22/81 (27%), Positives = 34/81 (41%)
Frame = +3
Query: 12 DHSSGSGTNNVEASYFAGQNNSNRRKLVSNTHPPVSQSGSSFPGNNGNRKNSLENNSMNS 191
D SS + NN + NN+N +N + + S SS NN + NNS ++
Sbjct: 445 DISSNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNSNSSNTNNNNINNTTNNNNSNSN 501
Query: 192 YINFTKRFRSRTLSANQMVSN 254
N S + S N ++N
Sbjct: 502 NNNNNNNSNSNSNSNNNNINN 522
>sp|P14196|AAC2_DICDI AAC-rich mRNA clone AAC11 protein
Length = 448
Score = 34.3 bits (77), Expect = 0.46
Identities = 21/81 (25%), Positives = 37/81 (45%)
Frame = +3
Query: 12 DHSSGSGTNNVEASYFAGQNNSNRRKLVSNTHPPVSQSGSSFPGNNGNRKNSLENNSMNS 191
++++ S NN+ + NNSN SN + + S ++ NN N N+ NN+ N+
Sbjct: 275 NNNNNSNINNINNN---NNNNSNNNNNSSNNNNNNNNSTNNNTNNNNNNTNNNTNNNNNN 331
Query: 192 YINFTKRFRSRTLSANQMVSN 254
N + +AN +N
Sbjct: 332 INNNNNNTNNNNNNANNQNTN 352
>sp|P09547|SWI1_YEAST Transcription regulatory protein SWI1 (SWI/SNF complex component
SWI1) (Transcription regulatory protein ADR6)
(Regulatory protein GAM3)
Length = 1314
Score = 33.9 bits (76), Expect = 0.60
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Frame = +3
Query: 63 GQNNSNRRKLVSNTHPPVSQSGSSFPGNNGNRKNSLENNSMNSYINFTKRF--------R 218
G NN+N ++N + ++ + N +S N + NS N ++F
Sbjct: 186 GGNNNNNSTGIANDNVITPHFITNVQSISQNSSSSTPNTNSNSTPNANQQFLPFNNSASN 245
Query: 219 SRTLSANQMVSNYSIDGHMISPTEFSPQKKEFLPNS 326
+ L++NQ++SNY+ M S EF+PN+
Sbjct: 246 NGNLTSNQLISNYAASNSM---DRSSSASNEFVPNT 278
Score = 31.6 bits (70), Expect = 3.0
Identities = 12/59 (20%), Positives = 29/59 (49%)
Frame = +3
Query: 15 HSSGSGTNNVEASYFAGQNNSNRRKLVSNTHPPVSQSGSSFPGNNGNRKNSLENNSMNS 191
+++ + N + NN+N +N +P + + ++ G++ N N+ NN+ N+
Sbjct: 7 NNNNNNNNTTTTTTTTNNNNTNNNNTNNNNNPANNTNNNNSTGHSSNTNNNTNNNNTNT 65
>sp|P54683|TAGB_DICDI Prestalk-specific protein tagB precursor
Length = 1905
Score = 33.9 bits (76), Expect = 0.60
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +3
Query: 42 VEASYFAGQNNSNRRKLVSNTHPPVSQSGSSFPGNNGNRKNSLENNSMNSYINFTKRFRS 221
++ S NN+N KL +N + + + ++ NN N N+ NN+ + I + F S
Sbjct: 90 IKPSININNNNNNNNKLNNNNNNNNNNNNNN--NNNNNNNNNNNNNNYYNSIEYYSSFVS 147
Query: 222 RTLSAN 239
R L +N
Sbjct: 148 RLLKSN 153
>sp|P22810|HMOC_DROME Homeotic protein ocelliless (Orthodenticle protein)
Length = 671
Score = 33.9 bits (76), Expect = 0.60
Identities = 28/93 (30%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Frame = +3
Query: 3 RKFDHSSGSGTNNVEASYFAGQNNSNRRKLVSNTHPPVSQSGSSFPGNNGNRKNSLENNS 182
R +++GS +NN S +G NNSN+ Q G S GNN N ++ S
Sbjct: 164 RSNSNNNGSSSNNNTQS--SGGNNSNKSSQKQGNSQSSQQGGGSSGGNNSNNNSAAAAAS 221
Query: 183 MNSYI---NFTKRFRSRTLSANQMVSNYSIDGH 272
+ + K S LSA S SI H
Sbjct: 222 AAAAVAAAQSIKTHHSSFLSAAAAASAQSIKTH 254
>sp|P32770|NRP1_YEAST Asparagine-rich protein (ARP protein)
Length = 719
Score = 33.9 bits (76), Expect = 0.60
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +3
Query: 27 SGTNNVEASYFAGQNNSNRRKLVSNTHPPVSQSGSSFPGN-NGNRKNSLENNSMNSYINF 203
SG NN+ +Y N +N ++N ++ GN NGN NS NN+ N+ N
Sbjct: 478 SGNNNIAPNYRYNNNINNNNNNINNMTNNRYNINNNINGNGNGNGNNSNNNNNHNN--NH 535
Query: 204 TKRFRSRTLSANQMVSN 254
+ ++++N +N
Sbjct: 536 NNNHHNGSINSNSNTNN 552
Score = 30.8 bits (68), Expect = 5.1
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +3
Query: 21 SGSGTNNVEASYFAGQNNSNRRKLVSNTHPPVSQSGSSFPGNNGNRKNSLENNSMNSYI 197
+G+G N S NN+N +N H S + +S NN N N +N+ NS I
Sbjct: 515 NGNGNGNGNNS----NNNNNHNNNHNNNHHNGSINSNSNTNNNNNNNNGNNSNNCNSNI 569
>sp|Q02629|NU100_YEAST Nucleoporin NUP100/NSP100 (Nuclear pore protein NUP100/NSP100)
Length = 959
Score = 33.5 bits (75), Expect = 0.79
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = +3
Query: 117 SQSGSSFPGNNGNRKNSLENNSMNSYINFTKR--FRSRTLSANQMVSNYSIDGHMISPTE 290
SQ +S GN+ N NS NN+ + + FT S +L N N G + T+
Sbjct: 28 SQQPNSLFGNSNNNNNSTSNNAQSGFGGFTSAAGSNSNSLFGNNNTQNNGAFGQSMGATQ 87
Query: 291 FSP 299
SP
Sbjct: 88 NSP 90
>sp|P50109|PSP2_YEAST Protein PSP2 (Mitochondrial regulator of splicing 15)
Length = 578
Score = 32.3 bits (72), Expect = 1.8
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
Frame = +3
Query: 12 DHSSGSGTNNVEASYFAGQNNSNRRKLVSNTHPPVSQSGSSFPGNNGNRKNSLENNSMNS 191
+H++ +G Y G N S+ + +N G S NN N N NN+ NS
Sbjct: 395 NHNNNNGNFRGSNRYRGGPNGSSYKGGHNNRGNRGGYRGGSSYNNNNNNTNDNNNNNNNS 454
Query: 192 YINFT--KRFRSRTLSANQMVSNYSIDGHMISPTEFS 296
N R+ R + + S+ S+D +F+
Sbjct: 455 SSNNNNGSRYHDRQNNEEGLTSDSSLDASGNKKNDFT 491
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,245,858
Number of Sequences: 369166
Number of extensions: 1737217
Number of successful extensions: 5526
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5035
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8582957970
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)