Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_A05
(871 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9N2M8|HDC_DROME Headcase protein [Contains: Headcase sh... 52 2e-06
sp|Q9UBI9|HDC_HUMAN Headcase protein homolog (hHDC) 48 3e-05
>sp|Q9N2M8|HDC_DROME Headcase protein [Contains: Headcase short protein]
Length = 1080
Score = 52.0 bits (123), Expect = 2e-06
Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 4/48 (8%)
Frame = +2
Query: 170 FLNVVCINCMHEI----VVCCQFCHRPWTGAQLLIGSLYTYDIFAAVP 301
+L VC++C+ + C+FC PW G+ L++G++Y YDIFAA+P
Sbjct: 539 YLTCVCMSCLDGTSSSRAINCRFCKEPWDGSSLVLGTMYAYDIFAAMP 586
>sp|Q9UBI9|HDC_HUMAN Headcase protein homolog (hHDC)
Length = 543
Score = 48.1 bits (113), Expect = 3e-05
Identities = 32/119 (26%), Positives = 47/119 (39%), Gaps = 1/119 (0%)
Frame = +2
Query: 173 LNVVCINCMHEI-VVCCQFCHRPWTGAQLLIGSLYTYDIFAAVPXXXXXXXXXXXXXXXX 349
L VC++C+ + + C C W G+ +G++YTYDI AA P
Sbjct: 443 LYAVCVDCLEGVHKIICIKCKSRWDGSWHQLGTMYTYDILAASPCCQARLNCKHCGKPVI 502
Query: 350 DLTGNSGDXXXXXXXXXXXXXXXXXXXXXXRLIECINCHNRDYHFVKPFTDIFKPIGPY 526
D+ + +C +C N DYHFVKPF+ FK + Y
Sbjct: 503 DV-----------------RIGMQYFSEYSNVQQCPHCGNLDYHFVKPFSS-FKVLEAY 543
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,051,631
Number of Sequences: 369166
Number of extensions: 1445006
Number of successful extensions: 2448
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2448
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8598109270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)