Planarian EST Database

DrC_00347

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_00347 TCAGAATAACTATAATATGTCTAAAAGTTATTTAATTGATAATGAAGAAATTCCAGAATC AAGACATCCACCAAGTTATCAAAATATAGATATACAAAATGAATTTGAAACAATCACTTT ACCTGGTCACCATGATCATACAGGAACTCTTACAAATAGTATAAATTGCCAGGTCTGTCG AAATTTTATCAATTTAGATCAGAAAATGAATAATCTAGTTGTAAAATGCAATAATTGTAA CGAAGCAACGCCTATTAAAGCAGCTCCTCCTGGTAAAAAATATGTTCGTTGTACATGTAA TGGATTACTTATTTGTAAATCAAGTTCATCAAGAGTGGGTTGCCCTCGTCCTCATTGTAA AGCAATAATCACTTTAGCACCGACAACAGATGAAATTGGCGTGGCTACCGGCATCACCAG TCAAACAGGATTACTAGCTCAATCCATTCGAGTTACCTGTGTAAATTGCAGTAGTGGATT TATAATCAGTGTACAAAAACAAAAGAAATATATGGTCGCAAAATGTCCACATTGTCAGAA AAACAGTAGTATCGGTCCATATTATGCACGAGTGAGGTGGATAATTTATTTCACATTGGC CTTAATATTTATCGGCCTTGGGATTGGAATTACAGTTGGAACTTTCCACAAAGCTATTGA TGCTAAAGGATATTATGTTGCATACGTCGGATTACTTCTATGTGGAGTTATTTTATTGAT AAGAGGAGCTATTTATTGCTGTATGCCAATAAGCACTATGGAAACTTCATTATTAACTAC AGCATAATTTTAAGATTCAATCATGACAATTACAATTGTTTAATCACTGATTTTGTTAAT TAATAAATTTTTAAAATTTCC

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00347
         (861 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q86T03|TM55B_HUMAN  Transmembrane protein 55B                  135   2e-31
sp|Q5PPM8|TM55B_RAT  Transmembrane protein 55B                    133   7e-31
sp|O70305|ATX2_MOUSE  Ataxin-2 (Spinocerebellar ataxia type ...    35   0.27 
sp|Q92667|AKAP1_HUMAN  A kinase anchor protein 1, mitochondr...    33   1.3  
sp|Q92258|GRISA_PODAN  GRISEA protein (MAC1 homolog)               31   3.9  
sp|P41653|YCF2_PINTH  Protein ycf2                                 31   3.9  
sp|Q9SUA9|DOF44_ARATH  Hypothetical Dof zinc finger protein ...    31   5.1  
sp|Q57932|Y512_METJA  Hypothetical protein MJ0512                  30   6.6  
sp|Q8HZI9|LAMC2_HORSE  Laminin gamma-2 chain precursor (Lami...    30   6.6  
sp|O04164|C71A6_NEPRA  Cytochrome P450 71A6                        30   8.6

>sp|Q86T03|TM55B_HUMAN Transmembrane protein 55B
          Length = 277

 Score =  135 bits (339), Expect = 2e-31
 Identities = 79/198 (39%), Positives = 100/198 (50%)
 Frame = +2

Query: 161 INCQVCRNFINLDQKMNNLVVKCNNCNEATPIKAAPPGKKYVRCTCNGLLICKSSSSRVG 340
           I C+VC++ IN++ KM+  VVKC  CNEATPIK APPGKKYVRC CN LLICK +S R+ 
Sbjct: 82  ITCRVCQSLINVEGKMHQHVVKCGVCNEATPIKNAPPGKKYVRCPCNCLLICKVTSQRIA 141

Query: 341 CPRPHCKAIITLAPTTDEIGVATGITSQTGLLAQSIRVTCVNCSSGFIISVQKQKKYMVA 520
           CPRP+CK II L P      V  G  S        +RV C +C + F+ +    +   +A
Sbjct: 142 CPRPYCKRIINLGP------VHPGPLSPEP-QPMGVRVICGHCKNTFLWTEFTDR--TLA 192

Query: 521 KCPHCQKNSSIGPYYARVRWIIYXXXXXXXXXXXXXXXXXXXHKAIDAKGYYVAYXXXXX 700
           +CPHC+K SSIG  Y R R I                       A    G Y A+     
Sbjct: 193 RCPHCRKVSSIGRRYPRKRCICCFLLGLLLAVTATGLAFGTWKHARRYGGIYAAWAFVIL 252

Query: 701 XXXXXXXRGAIYCCMPIS 754
                  R   + CM +S
Sbjct: 253 LAVLCLGRALYWACMKVS 270

>sp|Q5PPM8|TM55B_RAT Transmembrane protein 55B
          Length = 284

 Score =  133 bits (334), Expect = 7e-31
 Identities = 79/198 (39%), Positives = 100/198 (50%)
 Frame = +2

Query: 161 INCQVCRNFINLDQKMNNLVVKCNNCNEATPIKAAPPGKKYVRCTCNGLLICKSSSSRVG 340
           I C+VC++ IN++ KM+  VVKC  CNEATPIK APPGKKYVRC CN LLICK +S R+ 
Sbjct: 89  ITCRVCQSPINVEGKMHQHVVKCGVCNEATPIKNAPPGKKYVRCPCNCLLICKVTSQRIA 148

Query: 341 CPRPHCKAIITLAPTTDEIGVATGITSQTGLLAQSIRVTCVNCSSGFIISVQKQKKYMVA 520
           CPRP+CK II L P      V  G  S        +RV C +C + F+ +    +   +A
Sbjct: 149 CPRPYCKRIINLGP------VHPGPLSPEP-QPMGVRVICGHCKNTFLWTEFTDR--TLA 199

Query: 521 KCPHCQKNSSIGPYYARVRWIIYXXXXXXXXXXXXXXXXXXXHKAIDAKGYYVAYXXXXX 700
           +CPHC+K SSIG  Y R R I                       A    G Y A+     
Sbjct: 200 RCPHCRKVSSIGRRYPRKRCICCFLLGLLLAVTATGLAFGTWKPAQQYGGIYAAWAFVIL 259

Query: 701 XXXXXXXRGAIYCCMPIS 754
                  R   + CM +S
Sbjct: 260 LAVLCLGRALYWGCMKVS 277

>sp|O70305|ATX2_MOUSE Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)
          Length = 1285

 Score = 35.0 bits (79), Expect = 0.27
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
 Frame = +2

Query: 245 ATPIKAAPPGKKYVRCTCNGLLICKSSSSRVGCPRPHCKAI-----ITLAPTTDEIGVAT 409
           ATP +A PPG   VR +     +  S+    GCPRP C+ +     ++L P       AT
Sbjct: 108 ATPARACPPG---VRASPPRSGVSSSARPAPGCPRPACEPVYGPLTMSLKPQPQPPAPAT 164

Query: 410 GITSQTGLLA 439
           G     GLL+
Sbjct: 165 GRKPGGGLLS 174

>sp|Q92667|AKAP1_HUMAN A kinase anchor protein 1, mitochondrial precursor (Protein kinase
           A anchoring protein 1) (PRKA1) (A-kinase anchor protein
           149 kDa) (AKAP 149) (Dual specificity A-kinase anchoring
           protein 1) (D-AKAP-1) (Spermatid A-kinase anchor protein
           84) (S-AKAP84)
          Length = 903

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 28/100 (28%), Positives = 40/100 (40%)
 Frame = +2

Query: 251 PIKAAPPGKKYVRCTCNGLLICKSSSSRVGCPRPHCKAIITLAPTTDEIGVATGITSQTG 430
           P + +PP K YV C    LL   +  S+      H      LA TT     +  +  + G
Sbjct: 425 PAEGSPPPKTYVSC-LKSLLSSPTKDSKPNISAHHISLASCLALTTP----SEELPDRAG 479

Query: 431 LLAQSIRVTCVNCSSGFIISVQKQKKYMVAKCPHCQKNSS 550
           +L +    TCV C     +S   Q   +VA   HC  + S
Sbjct: 480 ILVED--ATCVTC-----MSDSSQSVPLVASPGHCSDSFS 512

>sp|Q92258|GRISA_PODAN GRISEA protein (MAC1 homolog)
          Length = 597

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
 Frame = +2

Query: 224 KCNNCNEATPIKAAPPGKKYVRCTCNGLLICKSSSSRVGCPRP---HCKAIITLAPTTDE 394
           KCN+ NE   +    PG+    C C     C     RV  P+    HC A    + T+ E
Sbjct: 22  KCNHYNERVMVPVRKPGRPLSTCPCPPGKPCVCGGVRVAIPKKQKCHCPAGTVDSATSSE 81

>sp|P41653|YCF2_PINTH Protein ycf2
          Length = 2054

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
 Frame = +1

Query: 400  RGYRHHQSNRITSSIHSSYLCKLQ*WIYNQCTKTK----EIYGRKMSTLSEKQ*YRSILC 567
            R Y+    + + S+ +     ++Q W   +C K K    +I GR   + S K+  ++I  
Sbjct: 948  RSYQDDLLSEMFSNKNEEIFPRIQDWFVTECLKNKIVNEDIDGRSTLSNSSKE-EQNIYR 1006

Query: 568  TSEVDNLFHIG--LNIYRPWDWNYSW 639
             S++D++F        Y PW +  +W
Sbjct: 1007 ISQIDSIFSKWDLFKTYMPWFFTSAW 1032

>sp|Q9SUA9|DOF44_ARATH Hypothetical Dof zinc finger protein DOF4.4 (AtDOF4.4)
          Length = 210

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +2

Query: 206 MNNLVVKCNNCNEATPIKAAPPGKKYVRCTCNGLLICKSSSSRVGCPRPHCK 361
           M+NL V  N  N+   +K  PP +   RC  +    C  ++     PR  CK
Sbjct: 1   MDNLNVFANEDNQVNGLKRPPPSRVCPRCDSDNTKFCFYNNYSESQPRYFCK 52

>sp|Q57932|Y512_METJA Hypothetical protein MJ0512
          Length = 237

 Score = 30.4 bits (67), Expect = 6.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 167 CQVCRNFINLDQKMNNLVVKCNNCNEATP 253
           C++CR  ++   K   LV  C NC E  P
Sbjct: 128 CKICRGIVDTKIKPRGLVYICRNCGEIDP 156

>sp|Q8HZI9|LAMC2_HORSE Laminin gamma-2 chain precursor (Laminin 5 gamma 2 subunit)
          Length = 1190

 Score = 30.4 bits (67), Expect = 6.6
 Identities = 17/64 (26%), Positives = 24/64 (37%)
 Frame = +2

Query: 152 TNSINCQVCRNFINLDQKMNNLVVKCNNCNEATPIKAAPPGKKYVRCTCNGLLICKSSSS 331
           T  ++C  C+     D    N   KC  CN        P G + V C  +G  +CK    
Sbjct: 546 TAGVHCDQCKAGYYGDPLAPNPADKCRACN------CNPVGSEPVECRSDGSCVCKPGFG 599

Query: 332 RVGC 343
            + C
Sbjct: 600 GLSC 603

>sp|O04164|C71A6_NEPRA Cytochrome P450 71A6
          Length = 511

 Score = 30.0 bits (66), Expect = 8.6
 Identities = 20/69 (28%), Positives = 30/69 (43%)
 Frame = +2

Query: 326 SSRVGCPRPHCKAIITLAPTTDEIGVATGITSQTGLLAQSIRVTCVNCSSGFIISVQKQK 505
           S R GCP        T A   DE+ +AT +      L   +RV  ++ S G   ++ K+ 
Sbjct: 445 SGRRGCPGA------TFAAAIDELALATLVHKFDFKLPNGVRVEDLDMSEGSGFTIHKKF 498

Query: 506 KYMVAKCPH 532
             +V   PH
Sbjct: 499 PLLVVPTPH 507

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,885,210
Number of Sequences: 369166
Number of extensions: 1889872
Number of successful extensions: 4484
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4479
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8534739105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00347

Planaria EST Database

DrC_00347

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail