Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_E13
(860 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q86T03|TM55B_HUMAN Transmembrane protein 55B 135 2e-31
sp|Q5PPM8|TM55B_RAT Transmembrane protein 55B 133 7e-31
sp|O70305|ATX2_MOUSE Ataxin-2 (Spinocerebellar ataxia type ... 35 0.27
sp|Q92667|AKAP1_HUMAN A kinase anchor protein 1, mitochondr... 33 1.3
sp|Q92258|GRISA_PODAN GRISEA protein (MAC1 homolog) 31 3.9
sp|P41653|YCF2_PINTH Protein ycf2 31 3.9
sp|Q9SUA9|DOF44_ARATH Hypothetical Dof zinc finger protein ... 31 5.1
sp|Q57932|Y512_METJA Hypothetical protein MJ0512 30 6.6
sp|Q8HZI9|LAMC2_HORSE Laminin gamma-2 chain precursor (Lami... 30 6.6
sp|O04164|C71A6_NEPRA Cytochrome P450 71A6 30 8.6
>sp|Q86T03|TM55B_HUMAN Transmembrane protein 55B
Length = 277
Score = 135 bits (339), Expect = 2e-31
Identities = 79/198 (39%), Positives = 100/198 (50%)
Frame = +2
Query: 161 INCQVCRNFINLDQKMNNLVVKCNNCNEATPIKAAPPGKKYVRCTCNGLLICKSSSSRVG 340
I C+VC++ IN++ KM+ VVKC CNEATPIK APPGKKYVRC CN LLICK +S R+
Sbjct: 82 ITCRVCQSLINVEGKMHQHVVKCGVCNEATPIKNAPPGKKYVRCPCNCLLICKVTSQRIA 141
Query: 341 CPRPHCKAIITLAPTTDEIGVATGITSQTGLLAQSIRVTCVNCSSGFIISVQKQKKYMVA 520
CPRP+CK II L P V G S +RV C +C + F+ + + +A
Sbjct: 142 CPRPYCKRIINLGP------VHPGPLSPEP-QPMGVRVICGHCKNTFLWTEFTDR--TLA 192
Query: 521 KCPHCQKNSSIGPYYARVRWIIYXXXXXXXXXXXXXXXXXXXHKAIDAKGYYVAYXXXXX 700
+CPHC+K SSIG Y R R I A G Y A+
Sbjct: 193 RCPHCRKVSSIGRRYPRKRCICCFLLGLLLAVTATGLAFGTWKHARRYGGIYAAWAFVIL 252
Query: 701 XXXXXXXRGAIYCCMPIS 754
R + CM +S
Sbjct: 253 LAVLCLGRALYWACMKVS 270
>sp|Q5PPM8|TM55B_RAT Transmembrane protein 55B
Length = 284
Score = 133 bits (334), Expect = 7e-31
Identities = 79/198 (39%), Positives = 100/198 (50%)
Frame = +2
Query: 161 INCQVCRNFINLDQKMNNLVVKCNNCNEATPIKAAPPGKKYVRCTCNGLLICKSSSSRVG 340
I C+VC++ IN++ KM+ VVKC CNEATPIK APPGKKYVRC CN LLICK +S R+
Sbjct: 89 ITCRVCQSPINVEGKMHQHVVKCGVCNEATPIKNAPPGKKYVRCPCNCLLICKVTSQRIA 148
Query: 341 CPRPHCKAIITLAPTTDEIGVATGITSQTGLLAQSIRVTCVNCSSGFIISVQKQKKYMVA 520
CPRP+CK II L P V G S +RV C +C + F+ + + +A
Sbjct: 149 CPRPYCKRIINLGP------VHPGPLSPEP-QPMGVRVICGHCKNTFLWTEFTDR--TLA 199
Query: 521 KCPHCQKNSSIGPYYARVRWIIYXXXXXXXXXXXXXXXXXXXHKAIDAKGYYVAYXXXXX 700
+CPHC+K SSIG Y R R I A G Y A+
Sbjct: 200 RCPHCRKVSSIGRRYPRKRCICCFLLGLLLAVTATGLAFGTWKPAQQYGGIYAAWAFVIL 259
Query: 701 XXXXXXXRGAIYCCMPIS 754
R + CM +S
Sbjct: 260 LAVLCLGRALYWGCMKVS 277
>sp|O70305|ATX2_MOUSE Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)
Length = 1285
Score = 35.0 bits (79), Expect = 0.27
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = +2
Query: 245 ATPIKAAPPGKKYVRCTCNGLLICKSSSSRVGCPRPHCKAI-----ITLAPTTDEIGVAT 409
ATP +A PPG VR + + S+ GCPRP C+ + ++L P AT
Sbjct: 108 ATPARACPPG---VRASPPRSGVSSSARPAPGCPRPACEPVYGPLTMSLKPQPQPPAPAT 164
Query: 410 GITSQTGLLA 439
G GLL+
Sbjct: 165 GRKPGGGLLS 174
>sp|Q92667|AKAP1_HUMAN A kinase anchor protein 1, mitochondrial precursor (Protein kinase
A anchoring protein 1) (PRKA1) (A-kinase anchor protein
149 kDa) (AKAP 149) (Dual specificity A-kinase anchoring
protein 1) (D-AKAP-1) (Spermatid A-kinase anchor protein
84) (S-AKAP84)
Length = 903
Score = 32.7 bits (73), Expect = 1.3
Identities = 28/100 (28%), Positives = 40/100 (40%)
Frame = +2
Query: 251 PIKAAPPGKKYVRCTCNGLLICKSSSSRVGCPRPHCKAIITLAPTTDEIGVATGITSQTG 430
P + +PP K YV C LL + S+ H LA TT + + + G
Sbjct: 425 PAEGSPPPKTYVSC-LKSLLSSPTKDSKPNISAHHISLASCLALTTP----SEELPDRAG 479
Query: 431 LLAQSIRVTCVNCSSGFIISVQKQKKYMVAKCPHCQKNSS 550
+L + TCV C +S Q +VA HC + S
Sbjct: 480 ILVED--ATCVTC-----MSDSSQSVPLVASPGHCSDSFS 512
>sp|Q92258|GRISA_PODAN GRISEA protein (MAC1 homolog)
Length = 597
Score = 31.2 bits (69), Expect = 3.9
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Frame = +2
Query: 224 KCNNCNEATPIKAAPPGKKYVRCTCNGLLICKSSSSRVGCPRP---HCKAIITLAPTTDE 394
KCN+ NE + PG+ C C C RV P+ HC A + T+ E
Sbjct: 22 KCNHYNERVMVPVRKPGRPLSTCPCPPGKPCVCGGVRVAIPKKQKCHCPAGTVDSATSSE 81
>sp|P41653|YCF2_PINTH Protein ycf2
Length = 2054
Score = 31.2 bits (69), Expect = 3.9
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Frame = +1
Query: 400 RGYRHHQSNRITSSIHSSYLCKLQ*WIYNQCTKTK----EIYGRKMSTLSEKQ*YRSILC 567
R Y+ + + S+ + ++Q W +C K K +I GR + S K+ ++I
Sbjct: 948 RSYQDDLLSEMFSNKNEEIFPRIQDWFVTECLKNKIVNEDIDGRSTLSNSSKE-EQNIYR 1006
Query: 568 TSEVDNLFHIG--LNIYRPWDWNYSW 639
S++D++F Y PW + +W
Sbjct: 1007 ISQIDSIFSKWDLFKTYMPWFFTSAW 1032
>sp|Q9SUA9|DOF44_ARATH Hypothetical Dof zinc finger protein DOF4.4 (AtDOF4.4)
Length = 210
Score = 30.8 bits (68), Expect = 5.1
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = +2
Query: 206 MNNLVVKCNNCNEATPIKAAPPGKKYVRCTCNGLLICKSSSSRVGCPRPHCK 361
M+NL V N N+ +K PP + RC + C ++ PR CK
Sbjct: 1 MDNLNVFANEDNQVNGLKRPPPSRVCPRCDSDNTKFCFYNNYSESQPRYFCK 52
>sp|Q57932|Y512_METJA Hypothetical protein MJ0512
Length = 237
Score = 30.4 bits (67), Expect = 6.6
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +2
Query: 167 CQVCRNFINLDQKMNNLVVKCNNCNEATP 253
C++CR ++ K LV C NC E P
Sbjct: 128 CKICRGIVDTKIKPRGLVYICRNCGEIDP 156
>sp|Q8HZI9|LAMC2_HORSE Laminin gamma-2 chain precursor (Laminin 5 gamma 2 subunit)
Length = 1190
Score = 30.4 bits (67), Expect = 6.6
Identities = 17/64 (26%), Positives = 24/64 (37%)
Frame = +2
Query: 152 TNSINCQVCRNFINLDQKMNNLVVKCNNCNEATPIKAAPPGKKYVRCTCNGLLICKSSSS 331
T ++C C+ D N KC CN P G + V C +G +CK
Sbjct: 546 TAGVHCDQCKAGYYGDPLAPNPADKCRACN------CNPVGSEPVECRSDGSCVCKPGFG 599
Query: 332 RVGC 343
+ C
Sbjct: 600 GLSC 603
>sp|O04164|C71A6_NEPRA Cytochrome P450 71A6
Length = 511
Score = 30.0 bits (66), Expect = 8.6
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = +2
Query: 326 SSRVGCPRPHCKAIITLAPTTDEIGVATGITSQTGLLAQSIRVTCVNCSSGFIISVQKQK 505
S R GCP T A DE+ +AT + L +RV ++ S G ++ K+
Sbjct: 445 SGRRGCPGA------TFAAAIDELALATLVHKFDFKLPNGVRVEDLDMSEGSGFTIHKKF 498
Query: 506 KYMVAKCPH 532
+V PH
Sbjct: 499 PLLVVPTPH 507
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,686,462
Number of Sequences: 369166
Number of extensions: 1885606
Number of successful extensions: 4483
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4478
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8534739105
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)