Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_M22
(632 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q86T03|TM55B_HUMAN Transmembrane protein 55B 103 4e-22
sp|Q5PPM8|TM55B_RAT Transmembrane protein 55B 103 5e-22
sp|O70305|ATX2_MOUSE Ataxin-2 (Spinocerebellar ataxia type ... 35 0.16
sp|Q92667|AKAP1_HUMAN A kinase anchor protein 1, mitochondr... 33 0.79
sp|P41653|YCF2_PINTH Protein ycf2 31 2.3
sp|O04164|C71A6_NEPRA Cytochrome P450 71A6 30 5.1
sp|P49735|MCM2_DROME DNA replication licensing factor MCM2 30 6.7
sp|P30328|COAT_PBCV1 Major capsid protein (VP54) 29 8.8
sp|Q9NWF9|UB7I1_HUMAN E3 ubiquitin ligase TRIAD3 (Ubiquitin... 29 8.8
sp|Q7UKT6|SURE_RHOBA 5'-nucleotidase surE (Nucleoside 5'-mo... 29 8.8
>sp|Q86T03|TM55B_HUMAN Transmembrane protein 55B
Length = 277
Score = 103 bits (257), Expect = 4e-22
Identities = 65/171 (38%), Positives = 80/171 (46%)
Frame = +1
Query: 13 EATPIKAAPPGKKYVRCTCNGLLICKSSSSRVGCPRPHCKAIITLAPTTDEIGVATGITS 192
EATPIK APPGKKYVRC CN LLICK +S R+ CPRP+CK II L P V G S
Sbjct: 109 EATPIKNAPPGKKYVRCPCNCLLICKVTSQRIACPRPYCKRIINLGP------VHPGPLS 162
Query: 193 QTGLLAQSIRVTCVNCSSGFIISVQKQKKYMVAKCPHCQKNSSIGPYYARVRWIIYXXXX 372
+RV C +C + F+ + + +A+CPHC+K SSIG Y R R I
Sbjct: 163 PEP-QPMGVRVICGHCKNTFLWTEFTDR--TLARCPHCRKVSSIGRRYPRKRCICCFLLG 219
Query: 373 XXXXXXXXXXXXXXXHKAIDAKGYYVAYXXXXXXXXXXXXRGAIYCCMPIS 525
A G Y A+ R + CM +S
Sbjct: 220 LLLAVTATGLAFGTWKHARRYGGIYAAWAFVILLAVLCLGRALYWACMKVS 270
>sp|Q5PPM8|TM55B_RAT Transmembrane protein 55B
Length = 284
Score = 103 bits (256), Expect = 5e-22
Identities = 65/171 (38%), Positives = 80/171 (46%)
Frame = +1
Query: 13 EATPIKAAPPGKKYVRCTCNGLLICKSSSSRVGCPRPHCKAIITLAPTTDEIGVATGITS 192
EATPIK APPGKKYVRC CN LLICK +S R+ CPRP+CK II L P V G S
Sbjct: 116 EATPIKNAPPGKKYVRCPCNCLLICKVTSQRIACPRPYCKRIINLGP------VHPGPLS 169
Query: 193 QTGLLAQSIRVTCVNCSSGFIISVQKQKKYMVAKCPHCQKNSSIGPYYARVRWIIYXXXX 372
+RV C +C + F+ + + +A+CPHC+K SSIG Y R R I
Sbjct: 170 PEP-QPMGVRVICGHCKNTFLWTEFTDR--TLARCPHCRKVSSIGRRYPRKRCICCFLLG 226
Query: 373 XXXXXXXXXXXXXXXHKAIDAKGYYVAYXXXXXXXXXXXXRGAIYCCMPIS 525
A G Y A+ R + CM +S
Sbjct: 227 LLLAVTATGLAFGTWKPAQQYGGIYAAWAFVILLAVLCLGRALYWGCMKVS 277
>sp|O70305|ATX2_MOUSE Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)
Length = 1285
Score = 35.0 bits (79), Expect = 0.16
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = +1
Query: 16 ATPIKAAPPGKKYVRCTCNGLLICKSSSSRVGCPRPHCKAI-----ITLAPTTDEIGVAT 180
ATP +A PPG VR + + S+ GCPRP C+ + ++L P AT
Sbjct: 108 ATPARACPPG---VRASPPRSGVSSSARPAPGCPRPACEPVYGPLTMSLKPQPQPPAPAT 164
Query: 181 GITSQTGLLA 210
G GLL+
Sbjct: 165 GRKPGGGLLS 174
>sp|Q92667|AKAP1_HUMAN A kinase anchor protein 1, mitochondrial precursor (Protein kinase
A anchoring protein 1) (PRKA1) (A-kinase anchor protein
149 kDa) (AKAP 149) (Dual specificity A-kinase anchoring
protein 1) (D-AKAP-1) (Spermatid A-kinase anchor protein
84) (S-AKAP84)
Length = 903
Score = 32.7 bits (73), Expect = 0.79
Identities = 28/100 (28%), Positives = 40/100 (40%)
Frame = +1
Query: 22 PIKAAPPGKKYVRCTCNGLLICKSSSSRVGCPRPHCKAIITLAPTTDEIGVATGITSQTG 201
P + +PP K YV C LL + S+ H LA TT + + + G
Sbjct: 425 PAEGSPPPKTYVSC-LKSLLSSPTKDSKPNISAHHISLASCLALTTP----SEELPDRAG 479
Query: 202 LLAQSIRVTCVNCSSGFIISVQKQKKYMVAKCPHCQKNSS 321
+L + TCV C +S Q +VA HC + S
Sbjct: 480 ILVED--ATCVTC-----MSDSSQSVPLVASPGHCSDSFS 512
>sp|P41653|YCF2_PINTH Protein ycf2
Length = 2054
Score = 31.2 bits (69), Expect = 2.3
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Frame = +3
Query: 171 RGYRHHQSNRITSSIHSSYLCKLQ*WIYNQCTKTK----EIYGRKMSTLSEKQ*YRSILC 338
R Y+ + + S+ + ++Q W +C K K +I GR + S K+ ++I
Sbjct: 948 RSYQDDLLSEMFSNKNEEIFPRIQDWFVTECLKNKIVNEDIDGRSTLSNSSKE-EQNIYR 1006
Query: 339 TSEVDNLFHIG--LNIYRPWDWNYSW 410
S++D++F Y PW + +W
Sbjct: 1007 ISQIDSIFSKWDLFKTYMPWFFTSAW 1032
>sp|O04164|C71A6_NEPRA Cytochrome P450 71A6
Length = 511
Score = 30.0 bits (66), Expect = 5.1
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = +1
Query: 97 SSRVGCPRPHCKAIITLAPTTDEIGVATGITSQTGLLAQSIRVTCVNCSSGFIISVQKQK 276
S R GCP T A DE+ +AT + L +RV ++ S G ++ K+
Sbjct: 445 SGRRGCPGA------TFAAAIDELALATLVHKFDFKLPNGVRVEDLDMSEGSGFTIHKKF 498
Query: 277 KYMVAKCPH 303
+V PH
Sbjct: 499 PLLVVPTPH 507
>sp|P49735|MCM2_DROME DNA replication licensing factor MCM2
Length = 887
Score = 29.6 bits (65), Expect = 6.7
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = +1
Query: 184 ITSQTGLLAQ--SIRVTCVNCSSGFIIS--VQKQK-KYMVAKCPHCQKNSSIGPYYARVR 348
+T+ TG+L Q I+ CV C G+++ VQ Q + CP CQ S GP+ +
Sbjct: 297 VTATTGVLPQLSVIKYDCVKC--GYVLGPFVQSQNTEIKPGSCPECQ---STGPFSINME 351
Query: 349 WIIY 360
+Y
Sbjct: 352 QTLY 355
>sp|P30328|COAT_PBCV1 Major capsid protein (VP54)
Length = 437
Score = 29.3 bits (64), Expect = 8.8
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 519 NKHYGNFIINYSIILRFNHDNYNC-LITDFVN 611
+KHY ++ Y + R N D YN +TD+VN
Sbjct: 106 DKHYNDWFRTYDALFRMNDDRYNYRRMTDWVN 137
>sp|Q9NWF9|UB7I1_HUMAN E3 ubiquitin ligase TRIAD3 (Ubiquitin conjugating enzyme 7
interacting protein 1) (Zinc finger protein inhibiting
NF-kappa-B)
Length = 866
Score = 29.3 bits (64), Expect = 8.8
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +1
Query: 10 REATPIKAAPPGKKYVRC-TCNGLLICKSSSSRVGCPRPHCK 132
R+A AA + VRC +C+ + S R CP PHC+
Sbjct: 588 RKAEEEVAAAYADELVRCPSCSFPALLDSDVKRFSCPNPHCR 629
>sp|Q7UKT6|SURE_RHOBA 5'-nucleotidase surE (Nucleoside 5'-monophosphate phosphohydrolase)
Length = 253
Score = 29.3 bits (64), Expect = 8.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 124 HCKAIITLAPTTDEIGVATGITSQTGLLAQSI 219
H +IT+AP T++ GV IT T L+ +SI
Sbjct: 25 HLGEVITVAPATEQSGVGHSITYLTPLVPKSI 56
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,660,552
Number of Sequences: 369166
Number of extensions: 1358981
Number of successful extensions: 3085
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3080
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5072399280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)