Planaria EST Database

DrC_00344

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00344
         (522 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q11073|YT45_CAEEL  Hypothetical protein B0416.5 in chromo...    65   1e-10
sp|P60815|FLVC2_RAT  Feline leukemia virus subgroup C recept...    47   4e-05
sp|Q9UPI3|FLVC2_HUMAN  Feline leukemia virus subgroup C rece...    45   1e-04
sp|Q91X85|FLVC2_MOUSE  Feline leukemia virus subgroup C rece...    45   1e-04
sp|Q9Y5Y0|FLVC1_HUMAN  Feline leukemia virus subgroup C rece...    43   4e-04
sp|Q9N1F2|FLVC1_FELCA  Feline leukemia virus subgroup C rece...    43   4e-04
sp|O01735|YC91_CAEEL  Hypothetical transporter C09D4.1             43   5e-04
sp|Q9ES43|FLVC1_MUSDU  Feline leukemia virus subgroup C rece...    42   0.001
sp|P25089|FPRL2_HUMAN  FMLP-related receptor II (FMLP-R-II) ...    31   2.0  
sp|Q57424|Y647_HAEIN  Hypothetical protein HI0647                  30   2.7  

>sp|Q11073|YT45_CAEEL Hypothetical protein B0416.5 in chromosome X
          Length = 507

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 5/126 (3%)
 Frame = +2

Query: 2   YSSIQIPIAISVCAIGAFGVALYSVALELAAEITYPVSENVSTGLLVVSGQIFSVIFILL 181
           +    + + ++    G  G+A Y + LELA+E T+PVSE  STGL+V+SGQI SVI++ +
Sbjct: 349 HQGYSVILGVTCLLFGVLGLATYPIGLELASECTFPVSEATSTGLIVLSGQIQSVIYVFI 408

Query: 182 SQVLWTTLNANNLNQPCSCKTSSDC-----RNYWSFNVFMSVASVVGSTIMLLGFSAQYR 346
            +     L  + ++      T  D       N  S  +F  +A+++  T+++L F   Y+
Sbjct: 409 MKNFARPLQPDRMHIQVCQLTPDDTINTPKDNTMSIMIFSLLATLLVLTLVVL-FKPVYK 467

Query: 347 RRSMER 364
           R   ER
Sbjct: 468 RLEAER 473

>sp|P60815|FLVC2_RAT Feline leukemia virus subgroup C receptor-related protein 2
           (Calcium-chelate transporter) (CCT)
          Length = 546

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 22/52 (42%), Positives = 32/52 (61%)
 Frame = +2

Query: 23  IAISVCAIGAFGVALYSVALELAAEITYPVSENVSTGLLVVSGQIFSVIFIL 178
           + I+  ++G F      +  E A E+TYP SE VS+GLL VS Q+F +IF +
Sbjct: 421 VFITADSLGFFMTGYLPLGFEFAVELTYPESEGVSSGLLNVSAQVFGIIFTI 472

>sp|Q9UPI3|FLVC2_HUMAN Feline leukemia virus subgroup C receptor-related protein 2
           (Calcium-chelate transporter) (CCT)
          Length = 526

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 20/52 (38%), Positives = 31/52 (59%)
 Frame = +2

Query: 23  IAISVCAIGAFGVALYSVALELAAEITYPVSENVSTGLLVVSGQIFSVIFIL 178
           + I+   +G F      +  E A E+TYP SE +S+GLL +S Q+F +IF +
Sbjct: 404 VFITAGTMGFFMTGYLPLGFEFAVELTYPESEGISSGLLNISAQVFGIIFTI 455

>sp|Q91X85|FLVC2_MOUSE Feline leukemia virus subgroup C receptor-related protein 2
           (Calcium-chelate transporter) (CCT)
          Length = 551

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 21/52 (40%), Positives = 30/52 (57%)
 Frame = +2

Query: 23  IAISVCAIGAFGVALYSVALELAAEITYPVSENVSTGLLVVSGQIFSVIFIL 178
           + I+   +G F      +  E A E TYP SE VS+GLL VS Q+F ++F +
Sbjct: 427 VFITAGTLGFFMTGYLPLGFEFAVEFTYPESEGVSSGLLNVSAQVFGIVFTI 478

>sp|Q9Y5Y0|FLVC1_HUMAN Feline leukemia virus subgroup C receptor-related protein 1 (Feline
           leukemia virus subgroup C receptor) (hFLVCR)
          Length = 555

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 21/45 (46%), Positives = 26/45 (57%)
 Frame = +2

Query: 44  IGAFGVALYSVALELAAEITYPVSENVSTGLLVVSGQIFSVIFIL 178
           +G F      +  E A EITYP SE  S+GLL  S QIF ++F L
Sbjct: 435 LGFFMTGYLPLGFEFAVEITYPESEGTSSGLLNASAQIFGILFTL 479

>sp|Q9N1F2|FLVC1_FELCA Feline leukemia virus subgroup C receptor-related protein 1
          Length = 560

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 23/61 (37%), Positives = 32/61 (52%)
 Frame = +2

Query: 17  IPIAISVCAIGAFGVALYSVALELAAEITYPVSENVSTGLLVVSGQIFSVIFILLSQVLW 196
           I + ++   +G F      +  E A EITYP SE  S+GLL  + QIF ++F L    L 
Sbjct: 426 IVVFVTGGVLGFFMTGYLPLGFEFAVEITYPESEGTSSGLLNAAAQIFGILFTLAQGKLT 485

Query: 197 T 199
           T
Sbjct: 486 T 486

>sp|O01735|YC91_CAEEL Hypothetical transporter C09D4.1
          Length = 586

 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
 Frame = +2

Query: 23  IAISVCAIGAFGVALYSVALELAAEITYPVSENVSTGLLVVSGQIFSVIFILLSQVL--- 193
           + I+   +G F      +  E AAEITYP +E  ++GLL  S QIF +    L  ++   
Sbjct: 469 VFINAALLGFFMTGYLPIGFEFAAEITYPAAEGTTSGLLNASAQIFGIALTWLMGIVMHG 528

Query: 194 WTTLNANNLNQPC 232
           + T  +N +   C
Sbjct: 529 FGTFTSNIIMSSC 541

>sp|Q9ES43|FLVC1_MUSDU Feline leukemia virus subgroup C receptor-related protein 1
          Length = 560

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 30/113 (26%), Positives = 45/113 (39%)
 Frame = +2

Query: 44  IGAFGVALYSVALELAAEITYPVSENVSTGLLVVSGQIFSVIFILLSQVLWTTLNANNLN 223
           +G F      +  E A EITYP SE +S+GLL  + QI  + F L    + T  N+    
Sbjct: 440 LGFFMTGYLPLGFEFAVEITYPESEGMSSGLLNTAAQILGIFFTLAQGKITTDYNSPEAG 499

Query: 224 QPCSCKTSSDCRNYWSFNVFMSVASVVGSTIMLLGFSAQYRRRSMERALVNTE 382
                            N+F+     VG  +  L   +  RR ++   L N +
Sbjct: 500 -----------------NIFLCAWMFVGIILTAL-IKSDLRRHNINTGLTNID 534

>sp|P25089|FPRL2_HUMAN FMLP-related receptor II (FMLP-R-II) (Formylpeptide receptor-like
           2)
          Length = 353

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
 Frame = +2

Query: 101 TYPVSENVSTGLLVVSGQIFSVIFILLSQVLWTTLNANNLNQPCSCKTSSDCRNYWS--- 271
           T  +++ V TGL      IF+++  L + + WTT++  N +  C    +     +W    
Sbjct: 138 TMSLAKRVMTGLW-----IFTIVLTLPNFIFWTTISTTNGDTYCIFNFA-----FWGDTA 187

Query: 272 ---FNVFMSVASVVGSTIMLLGFS 334
               NVF+++A V      ++GFS
Sbjct: 188 VERLNVFITMAKVFLILHFIIGFS 211

>sp|Q57424|Y647_HAEIN Hypothetical protein HI0647
          Length = 238

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +2

Query: 20  PIAISVCAIGAFGVALYSVALELAAEITYPVSENVSTGLLVVSGQIFSVIFILLSQVL 193
           P+ +  CAI A    + ++    AAE    VSEN+ T  + ++ Q+ S I  L + V+
Sbjct: 43  PVGVKTCAIIAVTTCVLTIVSIQAAEHYAQVSENIRTDPMRLAAQVISGIGFLGAGVI 100

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,296,600
Number of Sequences: 369166
Number of extensions: 978334
Number of successful extensions: 2927
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2927
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3452909250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00344

  1. Dr_sW_009_D23
  2. Dr_sW_009_E14