Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_E14
(515 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q11073|YT45_CAEEL Hypothetical protein B0416.5 in chromo... 52 1e-06
sp|P60815|FLVC2_RAT Feline leukemia virus subgroup C recept... 41 0.002
sp|Q9UPI3|FLVC2_HUMAN Feline leukemia virus subgroup C rece... 40 0.003
sp|Q91X85|FLVC2_MOUSE Feline leukemia virus subgroup C rece... 40 0.004
sp|Q9Y5Y0|FLVC1_HUMAN Feline leukemia virus subgroup C rece... 39 0.007
sp|Q9N1F2|FLVC1_FELCA Feline leukemia virus subgroup C rece... 39 0.010
sp|Q9ES43|FLVC1_MUSDU Feline leukemia virus subgroup C rece... 37 0.021
sp|O01735|YC91_CAEEL Hypothetical transporter C09D4.1 36 0.062
sp|P25089|FPRL2_HUMAN FMLP-related receptor II (FMLP-R-II) ... 31 2.0
sp|P90212|OPEP3_NPVOP OPEP-3 protein (P32) 30 2.6
>sp|Q11073|YT45_CAEEL Hypothetical protein B0416.5 in chromosome X
Length = 507
Score = 51.6 bits (122), Expect = 1e-06
Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 5/100 (5%)
Frame = +1
Query: 73 IKLAAEITYPVSENVSTGLLVVSGQIFSVIFILLSQVLWTTLNANNLNQPCSCKTSSDC- 249
++LA+E T+PVSE STGL+V+SGQI SVI++ + + L + ++ T D
Sbjct: 375 LELASECTFPVSEATSTGLIVLSGQIQSVIYVFIMKNFARPLQPDRMHIQVCQLTPDDTI 434
Query: 250 ----RNYWSFNVFMSVASVVGSTIMLLGFSAQYRRRSMER 357
N S +F +A+++ T+++L F Y+R ER
Sbjct: 435 NTPKDNTMSIMIFSLLATLLVLTLVVL-FKPVYKRLEAER 473
>sp|P60815|FLVC2_RAT Feline leukemia virus subgroup C receptor-related protein 2
(Calcium-chelate transporter) (CCT)
Length = 546
Score = 40.8 bits (94), Expect = 0.002
Identities = 18/32 (56%), Positives = 24/32 (75%)
Frame = +1
Query: 76 KLAAEITYPVSENVSTGLLVVSGQIFSVIFIL 171
+ A E+TYP SE VS+GLL VS Q+F +IF +
Sbjct: 441 EFAVELTYPESEGVSSGLLNVSAQVFGIIFTI 472
>sp|Q9UPI3|FLVC2_HUMAN Feline leukemia virus subgroup C receptor-related protein 2
(Calcium-chelate transporter) (CCT)
Length = 526
Score = 40.0 bits (92), Expect = 0.003
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +1
Query: 76 KLAAEITYPVSENVSTGLLVVSGQIFSVIFIL 171
+ A E+TYP SE +S+GLL +S Q+F +IF +
Sbjct: 424 EFAVELTYPESEGISSGLLNISAQVFGIIFTI 455
>sp|Q91X85|FLVC2_MOUSE Feline leukemia virus subgroup C receptor-related protein 2
(Calcium-chelate transporter) (CCT)
Length = 551
Score = 39.7 bits (91), Expect = 0.004
Identities = 17/32 (53%), Positives = 23/32 (71%)
Frame = +1
Query: 76 KLAAEITYPVSENVSTGLLVVSGQIFSVIFIL 171
+ A E TYP SE VS+GLL VS Q+F ++F +
Sbjct: 447 EFAVEFTYPESEGVSSGLLNVSAQVFGIVFTI 478
>sp|Q9Y5Y0|FLVC1_HUMAN Feline leukemia virus subgroup C receptor-related protein 1 (Feline
leukemia virus subgroup C receptor) (hFLVCR)
Length = 555
Score = 38.9 bits (89), Expect = 0.007
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = +1
Query: 76 KLAAEITYPVSENVSTGLLVVSGQIFSVIFIL 171
+ A EITYP SE S+GLL S QIF ++F L
Sbjct: 448 EFAVEITYPESEGTSSGLLNASAQIFGILFTL 479
>sp|Q9N1F2|FLVC1_FELCA Feline leukemia virus subgroup C receptor-related protein 1
Length = 560
Score = 38.5 bits (88), Expect = 0.010
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = +1
Query: 76 KLAAEITYPVSENVSTGLLVVSGQIFSVIFILLSQVLWT 192
+ A EITYP SE S+GLL + QIF ++F L L T
Sbjct: 448 EFAVEITYPESEGTSSGLLNAAAQIFGILFTLAQGKLTT 486
>sp|Q9ES43|FLVC1_MUSDU Feline leukemia virus subgroup C receptor-related protein 1
Length = 560
Score = 37.4 bits (85), Expect = 0.021
Identities = 27/100 (27%), Positives = 41/100 (41%)
Frame = +1
Query: 76 KLAAEITYPVSENVSTGLLVVSGQIFSVIFILLSQVLWTTLNANNLNQPCSCKTSSDCRN 255
+ A EITYP SE +S+GLL + QI + F L + T N+
Sbjct: 453 EFAVEITYPESEGMSSGLLNTAAQILGIFFTLAQGKITTDYNSPEAG------------- 499
Query: 256 YWSFNVFMSVASVVGSTIMLLGFSAQYRRRSMERALVNTE 375
N+F+ VG + L + RR ++ L N +
Sbjct: 500 ----NIFLCAWMFVGIILTAL-IKSDLRRHNINTGLTNID 534
>sp|O01735|YC91_CAEEL Hypothetical transporter C09D4.1
Length = 586
Score = 35.8 bits (81), Expect = 0.062
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = +1
Query: 76 KLAAEITYPVSENVSTGLLVVSGQIFSVIFILLSQVL---WTTLNANNLNQPC 225
+ AAEITYP +E ++GLL S QIF + L ++ + T +N + C
Sbjct: 489 EFAAEITYPAAEGTTSGLLNASAQIFGIALTWLMGIVMHGFGTFTSNIIMSSC 541
>sp|P25089|FPRL2_HUMAN FMLP-related receptor II (FMLP-R-II) (Formylpeptide receptor-like
2)
Length = 353
Score = 30.8 bits (68), Expect = 2.0
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Frame = +1
Query: 94 TYPVSENVSTGLLVVSGQIFSVIFILLSQVLWTTLNANNLNQPCSCKTSSDCRNYWS--- 264
T +++ V TGL IF+++ L + + WTT++ N + C + +W
Sbjct: 138 TMSLAKRVMTGLW-----IFTIVLTLPNFIFWTTISTTNGDTYCIFNFA-----FWGDTA 187
Query: 265 ---FNVFMSVASVVGSTIMLLGFS 327
NVF+++A V ++GFS
Sbjct: 188 VERLNVFITMAKVFLILHFIIGFS 211
>sp|P90212|OPEP3_NPVOP OPEP-3 protein (P32)
Length = 285
Score = 30.4 bits (67), Expect = 2.6
Identities = 16/57 (28%), Positives = 28/57 (49%)
Frame = +1
Query: 43 IFLYPDSYCNIKLAAEITYPVSENVSTGLLVVSGQIFSVIFILLSQVLWTTLNANNL 213
+F + +++C++ +I + L V S F+++F S LW TL NNL
Sbjct: 175 VFEFRENFCSLDTITDIVF-------NWLSVTSNDNFTILFKNSSNALWKTLANNNL 224
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,752,136
Number of Sequences: 369166
Number of extensions: 1002510
Number of successful extensions: 2876
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2876
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3354254700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)