Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_D23
(519 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q11073|YT45_CAEEL Hypothetical protein B0416.5 in chromo... 64 2e-10
sp|P60815|FLVC2_RAT Feline leukemia virus subgroup C recept... 47 4e-05
sp|Q9UPI3|FLVC2_HUMAN Feline leukemia virus subgroup C rece... 45 1e-04
sp|Q91X85|FLVC2_MOUSE Feline leukemia virus subgroup C rece... 45 1e-04
sp|Q9Y5Y0|FLVC1_HUMAN Feline leukemia virus subgroup C rece... 43 4e-04
sp|Q9N1F2|FLVC1_FELCA Feline leukemia virus subgroup C rece... 43 4e-04
sp|O01735|YC91_CAEEL Hypothetical transporter C09D4.1 43 5e-04
sp|Q9ES43|FLVC1_MUSDU Feline leukemia virus subgroup C rece... 41 0.001
sp|Q8IWV8|UBR2_HUMAN Ubiquitin-protein ligase E3 component ... 31 1.5
sp|Q57424|Y647_HAEIN Hypothetical protein HI0647 30 2.6
>sp|Q11073|YT45_CAEEL Hypothetical protein B0416.5 in chromosome X
Length = 507
Score = 63.9 bits (154), Expect = 2e-10
Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 5/126 (3%)
Frame = +2
Query: 2 YSSIQIPIAISVCAIGAFGVALYSVALELAAEITYPVSENVSTGLLVVSGQIFSVIFILL 181
+ + + ++ G G+A Y + LELA+E T+PVSE STGL+V+SGQI SVI++ +
Sbjct: 349 HQGYSVILGVTCLLFGVLGLATYPIGLELASECTFPVSEATSTGLIVLSGQIQSVIYVFI 408
Query: 182 SQVLWTTLNANNLNQPCSCKTSSDC-----RNYWSFNVFMSVAGVVGSTIMLLGFSAQYR 346
+ L + ++ T D N S +F +A ++ T+++L F Y+
Sbjct: 409 MKNFARPLQPDRMHIQVCQLTPDDTINTPKDNTMSIMIFSLLATLLVLTLVVL-FKPVYK 467
Query: 347 RRSMER 364
R ER
Sbjct: 468 RLEAER 473
>sp|P60815|FLVC2_RAT Feline leukemia virus subgroup C receptor-related protein 2
(Calcium-chelate transporter) (CCT)
Length = 546
Score = 46.6 bits (109), Expect = 4e-05
Identities = 22/52 (42%), Positives = 32/52 (61%)
Frame = +2
Query: 23 IAISVCAIGAFGVALYSVALELAAEITYPVSENVSTGLLVVSGQIFSVIFIL 178
+ I+ ++G F + E A E+TYP SE VS+GLL VS Q+F +IF +
Sbjct: 421 VFITADSLGFFMTGYLPLGFEFAVELTYPESEGVSSGLLNVSAQVFGIIFTI 472
>sp|Q9UPI3|FLVC2_HUMAN Feline leukemia virus subgroup C receptor-related protein 2
(Calcium-chelate transporter) (CCT)
Length = 526
Score = 45.1 bits (105), Expect = 1e-04
Identities = 20/52 (38%), Positives = 31/52 (59%)
Frame = +2
Query: 23 IAISVCAIGAFGVALYSVALELAAEITYPVSENVSTGLLVVSGQIFSVIFIL 178
+ I+ +G F + E A E+TYP SE +S+GLL +S Q+F +IF +
Sbjct: 404 VFITAGTMGFFMTGYLPLGFEFAVELTYPESEGISSGLLNISAQVFGIIFTI 455
>sp|Q91X85|FLVC2_MOUSE Feline leukemia virus subgroup C receptor-related protein 2
(Calcium-chelate transporter) (CCT)
Length = 551
Score = 45.1 bits (105), Expect = 1e-04
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = +2
Query: 23 IAISVCAIGAFGVALYSVALELAAEITYPVSENVSTGLLVVSGQIFSVIFIL 178
+ I+ +G F + E A E TYP SE VS+GLL VS Q+F ++F +
Sbjct: 427 VFITAGTLGFFMTGYLPLGFEFAVEFTYPESEGVSSGLLNVSAQVFGIVFTI 478
>sp|Q9Y5Y0|FLVC1_HUMAN Feline leukemia virus subgroup C receptor-related protein 1 (Feline
leukemia virus subgroup C receptor) (hFLVCR)
Length = 555
Score = 43.1 bits (100), Expect = 4e-04
Identities = 21/45 (46%), Positives = 26/45 (57%)
Frame = +2
Query: 44 IGAFGVALYSVALELAAEITYPVSENVSTGLLVVSGQIFSVIFIL 178
+G F + E A EITYP SE S+GLL S QIF ++F L
Sbjct: 435 LGFFMTGYLPLGFEFAVEITYPESEGTSSGLLNASAQIFGILFTL 479
>sp|Q9N1F2|FLVC1_FELCA Feline leukemia virus subgroup C receptor-related protein 1
Length = 560
Score = 43.1 bits (100), Expect = 4e-04
Identities = 23/61 (37%), Positives = 32/61 (52%)
Frame = +2
Query: 17 IPIAISVCAIGAFGVALYSVALELAAEITYPVSENVSTGLLVVSGQIFSVIFILLSQVLW 196
I + ++ +G F + E A EITYP SE S+GLL + QIF ++F L L
Sbjct: 426 IVVFVTGGVLGFFMTGYLPLGFEFAVEITYPESEGTSSGLLNAAAQIFGILFTLAQGKLT 485
Query: 197 T 199
T
Sbjct: 486 T 486
>sp|O01735|YC91_CAEEL Hypothetical transporter C09D4.1
Length = 586
Score = 42.7 bits (99), Expect = 5e-04
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Frame = +2
Query: 23 IAISVCAIGAFGVALYSVALELAAEITYPVSENVSTGLLVVSGQIFSVIFILLSQVL--- 193
+ I+ +G F + E AAEITYP +E ++GLL S QIF + L ++
Sbjct: 469 VFINAALLGFFMTGYLPIGFEFAAEITYPAAEGTTSGLLNASAQIFGIALTWLMGIVMHG 528
Query: 194 WTTLNANNLNQPC 232
+ T +N + C
Sbjct: 529 FGTFTSNIIMSSC 541
>sp|Q9ES43|FLVC1_MUSDU Feline leukemia virus subgroup C receptor-related protein 1
Length = 560
Score = 41.2 bits (95), Expect = 0.001
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = +2
Query: 44 IGAFGVALYSVALELAAEITYPVSENVSTGLLVVSGQIFSVIFILLSQVLWTTLNA 211
+G F + E A EITYP SE +S+GLL + QI + F L + T N+
Sbjct: 440 LGFFMTGYLPLGFEFAVEITYPESEGMSSGLLNTAAQILGIFFTLAQGKITTDYNS 495
>sp|Q8IWV8|UBR2_HUMAN Ubiquitin-protein ligase E3 component N-recognin-2 (Ubiquitin-protein
ligase E3-alpha-2) (Ubiquitin-protein ligase E3-alpha-II)
Length = 1755
Score = 31.2 bits (69), Expect = 1.5
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 12/64 (18%)
Frame = -2
Query: 491 KYINENNKILNTPHNY--LVNQ----------NDFIEAMTAQHPICNSLLCVQVLSPCCA 348
+Y E+NK++N P +Y L+NQ D A T +C SLLC Q S CC
Sbjct: 1592 RYpreSNKLINLPEDYSSLINQASNFSCPKSGGDKSRAPTL-CLVCGSLLCSQ--SYCCQ 1648
Query: 347 CDIE 336
++E
Sbjct: 1649 TELE 1652
>sp|Q57424|Y647_HAEIN Hypothetical protein HI0647
Length = 238
Score = 30.4 bits (67), Expect = 2.6
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = +2
Query: 20 PIAISVCAIGAFGVALYSVALELAAEITYPVSENVSTGLLVVSGQIFSVIFILLSQVL 193
P+ + CAI A + ++ AAE VSEN+ T + ++ Q+ S I L + V+
Sbjct: 43 PVGVKTCAIIAVTTCVLTIVSIQAAEHYAQVSENIRTDPMRLAAQVISGIGFLGAGVI 100
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,315,135
Number of Sequences: 369166
Number of extensions: 1017927
Number of successful extensions: 3278
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3278
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3403581975
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)