Planaria EST Database

DrC_00340

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00340
         (897 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P14546|COX3_LEITA  Cytochrome c oxidase subunit 3 (Cytoch...    37   0.098
sp|P12778|CYB_PARLI  Cytochrome b                                  36   0.13 
sp|Q6PSC6|MATK_PHAVU  Maturase K (Intron maturase)                 36   0.17 
sp|Q35140|NU2M_NEUCR  NADH-ubiquinone oxidoreductase chain 2...    35   0.22 
sp|Q15643|TRIPB_HUMAN  Thyroid receptor-interacting protein ...    35   0.28 
sp|Q00798|RBP1_PLAVB  Reticulocyte binding protein 1 precursor     35   0.28 
sp|P15547|CYB_STRPU  Cytochrome b                                  35   0.37 
sp|Q6PP79|MATK_VIGSU  Maturase K (Intron maturase)                 34   0.48 
sp|Q9R1T4|SEPT6_MOUSE  Septin-6                                    34   0.63 
sp|Q14141|SEPT6_HUMAN  Septin-6                                    33   0.83 

>sp|P14546|COX3_LEITA Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
           III)
          Length = 284

 Score = 36.6 bits (83), Expect = 0.098
 Identities = 36/143 (25%), Positives = 64/143 (44%), Gaps = 14/143 (9%)
 Frame = -3

Query: 724 FVFSYWSIILLNVMISNHM-FVPPIRVPFILYCHTVPKINIVANIINFWIFELSNFESMH 548
           FVF ++ I + N++I+  + FV  + V F+L+         V  +   W+  L  F  + 
Sbjct: 134 FVFYWYFIDIFNLLINTFLLFVSGLFVNFVLFLFWFRFFLCV--LFMLWVGILFGFLFLW 191

Query: 547 FIFYRFNFPFISCN-------LFLLLI*NGIQIYK---LFFLCFKHISNFLQINHMLCNG 398
              + F   F++C+       LFL+ + +   ++    L FLCF    NFL ++      
Sbjct: 192 NQVWEFALLFVTCSCGVFGSILFLIDLLHFSHVFLGIFLLFLCFSRCFNFLCMDTRFVFL 251

Query: 397 PFQFIYFH---CTLFAILSFITF 338
               +Y+H   C  F +L F+ F
Sbjct: 252 YVVCLYWHFVDCVWFFLLRFVYF 274

>sp|P12778|CYB_PARLI Cytochrome b
          Length = 380

 Score = 36.2 bits (82), Expect = 0.13
 Identities = 40/168 (23%), Positives = 63/168 (37%), Gaps = 3/168 (1%)
 Frame = -3

Query: 826 IFDFCWRIHCLTIGTSDYHLSSHRVSIWNLWNIMFVFSYWSIILLNVMISNHMFVPPIRV 647
           +F  C   H   IG   Y+  S+++  WN+  I+F+ +  +  +  V++   M      V
Sbjct: 90  LFFICMYCH---IGRGLYYGGSNKIETWNVGVILFLVTVLTAFVGYVLVWGRMSFWAATV 146

Query: 646 PFILYCHTVPKINIVANIINFWI---FELSNFESMHFIFYRFNFPFISCNLFLLLI*NGI 476
                 + V  +  V   I  W+   F + N     F  + F FPFI            +
Sbjct: 147 ----IANLVTAVPCVGTTIVQWLWGGFSVDNATLTRFFAFHFLFPFIIA---------AL 193

Query: 475 QIYKLFFLCFKHISNFLQINHMLCNGPFQFIYFHCTLFAILSFITFIA 332
            I  L FL     +N + +N      PF   Y   T    + FI  IA
Sbjct: 194 AIIDLVFLHNSGANNPVGLNSNYDKAPFHIYY---TTKDTVGFIALIA 238

>sp|Q6PSC6|MATK_PHAVU Maturase K (Intron maturase)
          Length = 513

 Score = 35.8 bits (81), Expect = 0.17
 Identities = 36/138 (26%), Positives = 65/138 (47%), Gaps = 15/138 (10%)
 Frame = -3

Query: 742 NLWNIMFVFSYWSIILLNVMISNHMFVPPIRVPFILYCHTVPKINIVANIINFWIFELSN 563
           NL +I  +F ++   L+ +   NH     IR+P+ ++      + I+  I+ +WI ++S 
Sbjct: 123 NLQSIHSIFPFFEDKLIYL---NHK--SDIRIPYPIH------LEILVQILGYWIKDVSF 171

Query: 562 FESMHFIFYRFN-----FP-------FIS---CNLFLLLI*NGIQIYKLFFLCFKHISNF 428
           F  + F FY ++     FP       F S     +FL L    +  Y+  FL  ++ S+ 
Sbjct: 172 FHVIRFFFYYYSNWNSLFPPKKGISTFFSKRNLRIFLFLYNLYVWEYESIFLFLRNKSSQ 231

Query: 427 LQINHMLCNGPFQFIYFH 374
           LQ+ H      F+ I+F+
Sbjct: 232 LQLKHFRVF--FERIFFY 247

>sp|Q35140|NU2M_NEUCR NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
           2)
          Length = 583

 Score = 35.4 bits (80), Expect = 0.22
 Identities = 27/104 (25%), Positives = 48/104 (46%)
 Frame = -3

Query: 694 LNVMISNHMFVPPIRVPFILYCHTVPKINIVANIINFWIFELSNFESMHFIFYRFNFPFI 515
           L+++I   + +   R+  +L   T+  +  +  ++   +F  S   +  FIFY   + F 
Sbjct: 322 LSLIIGTVVGLTQFRIKRLLAYSTISHLGFI--LLALSVFTQSVESTQAFIFYLIQYSFS 379

Query: 514 SCNLFLLLI*NGIQIYKLFFLCFKHISNFLQINHMLCNGPFQFI 383
           + N+F++LI  G  +Y  +    K   N L IN    N P Q I
Sbjct: 380 NLNVFIILITIGFSLYG-YVWNNKEYKNLLDIN----NSPVQLI 418

>sp|Q15643|TRIPB_HUMAN Thyroid receptor-interacting protein 11 (TRIP-11) (Golgi-associated
            microtubule-binding protein 210) (GMAP-210) (Trip230)
            (Clonal evolution related gene on chromosome 14)
          Length = 1979

 Score = 35.0 bits (79), Expect = 0.28
 Identities = 34/166 (20%), Positives = 74/166 (44%), Gaps = 3/166 (1%)
 Frame = +2

Query: 374  VEVDELKGTIAQHVVDLEEIRDVLKAEKEKFINLNAISNEQQKKITAYERKIKTIEDEMH 553
            +E+ ELK  I Q   D +E +DVL +  E+   L  + N+++  I   + +   +++E+ 
Sbjct: 773  MEIAELKKNIEQMDTDHKETKDVLSSSLEEQKQLTQLINKKEIFIEKLKERSSKLQEELD 832

Query: 554  ALKVAKFKNPEXXXXXXXXXLRDSVAVKNKWHPNWWDKHMVTDHNIQQDNRPIRENKHDI 733
                A  KN           LR ++  K++   +  ++    ++++Q++   +RE +   
Sbjct: 833  KYSQALRKN---------EILRQTIEEKDRSLGSMKEE----NNHLQEELERLREEQSRT 879

Query: 734  PKIPNRNTMGAEVVVACPNCQTMYSPAEIENHVNH---CIENQ*QN 862
              + +  T+ +   +A    Q       +E  + H    IE+Q Q+
Sbjct: 880  APVADPKTLDSVTELASEVSQLNTIKEHLEEEIKHHQKIIEDQNQS 925

>sp|Q00798|RBP1_PLAVB Reticulocyte binding protein 1 precursor
          Length = 2833

 Score = 35.0 bits (79), Expect = 0.28
 Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +2

Query: 377  EVDELKGTIAQ-HVVDLEEIRDVLKAEKEKFINLNAISNEQQKKITAYERKIKTIEDEMH 553
            E+DEL   I++  +  +E   DV K   E    +N  +N   K +   E+K+K++ D MH
Sbjct: 2267 EMDELYRNISETKLKQMEHSTDVFKPMIELHKGMNETNN---KSLLEKEKKLKSVNDHMH 2323

Query: 554  ALKVAKFKN 580
            +++    KN
Sbjct: 2324 SMEAEMIKN 2332

>sp|P15547|CYB_STRPU Cytochrome b
          Length = 380

 Score = 34.7 bits (78), Expect = 0.37
 Identities = 41/168 (24%), Positives = 64/168 (38%), Gaps = 3/168 (1%)
 Frame = -3

Query: 826 IFDFCWRIHCLTIGTSDYHLSSHRVSIWNLWNIMFVFSYWSIILLNVMISNHMFVPPIRV 647
           +F  C   H   IG   Y+ S +++  WN+  I+F+ +  +  +  V++   M      V
Sbjct: 90  LFFICMYCH---IGRGLYYGSYNKIETWNVGVILFLVTILTAFMGYVLVWGQMSFWAATV 146

Query: 646 PFILYCHTVPKINIVANIINFWI---FELSNFESMHFIFYRFNFPFISCNLFLLLI*NGI 476
                 + V  I  +  II  W+   F + N     F  + F FPFI            +
Sbjct: 147 ----ITNLVSAIPYIGTIIVQWLWGGFSVDNATLTRFFPFHFLFPFIIA---------AL 193

Query: 475 QIYKLFFLCFKHISNFLQINHMLCNGPFQFIYFHCTLFAILSFITFIA 332
            +  L FL     +N    N      PF  IYF  T    + FI  +A
Sbjct: 194 AVIHLVFLHNSGANNPFAFNSNYDKAPFH-IYF--TTKDTVGFILLVA 238

>sp|Q6PP79|MATK_VIGSU Maturase K (Intron maturase)
          Length = 504

 Score = 34.3 bits (77), Expect = 0.48
 Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 15/138 (10%)
 Frame = -3

Query: 742 NLWNIMFVFSYWSIILLNVMISNHMFVPPIRVPFILYCHTVPKINIVANIINFWIFELSN 563
           NL +I  +F ++   L+ +   NH     IR+P+ ++      + I+  I+ +WI ++S 
Sbjct: 123 NLQSIHSIFPFFEDKLIYL---NHK--SDIRIPYPIH------LEILVQILRYWIKDVSF 171

Query: 562 FESMHFIFY------------RFNFPFIS---CNLFLLLI*NGIQIYKLFFLCFKHISNF 428
           F  +   FY            ++ F F S     +FL L    +  Y+  FL  ++ S+ 
Sbjct: 172 FHLIRLFFYYYYKLNSFFFPKKWIFTFFSKRNRRIFLFLYNLYVWEYESIFLFLRNKSSQ 231

Query: 427 LQINHMLCNGPFQFIYFH 374
           LQ+ H      FQ I+F+
Sbjct: 232 LQLKHFRVF--FQRIFFY 247

>sp|Q9R1T4|SEPT6_MOUSE Septin-6
          Length = 434

 Score = 33.9 bits (76), Expect = 0.63
 Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = +2

Query: 383 DELKGTIAQHVVDLE-EIRDVLKAEKEKFINLNAISNEQQKKITAYERKIKTIEDEMHAL 559
           +E++    Q V + E E+++  K   EKF  L  +  E++KK+   E K K +++EM+A 
Sbjct: 340 EEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQEEKKKL---EDKKKCLDEEMNAF 396

Query: 560 KVAK 571
           K  K
Sbjct: 397 KQRK 400

>sp|Q14141|SEPT6_HUMAN Septin-6
          Length = 434

 Score = 33.5 bits (75), Expect = 0.83
 Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
 Frame = +2

Query: 383 DELKGTIAQHVVDLE-EIRDVLKAEKEKFINLNAISNEQQKKITAYERKIKTIEDEMHAL 559
           +E++    Q V + E E+++  K   EKF  L  +  +++KK+   E K K+++DE++A 
Sbjct: 340 EEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKL---EDKKKSLDDEVNAF 396

Query: 560 KVAK 571
           K  K
Sbjct: 397 KQRK 400

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,571,201
Number of Sequences: 369166
Number of extensions: 1364853
Number of successful extensions: 4928
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4920
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9030416440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00340

  1. Dr_sW_009_B03
  2. Dr_sW_007_G21