Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_007_G21
(573 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6PSC6|MATK_PHAVU Maturase K (Intron maturase) 38 0.021
sp|Q6PP79|MATK_VIGSU Maturase K (Intron maturase) 37 0.035
sp|Q35140|NU2M_NEUCR NADH-ubiquinone oxidoreductase chain 2... 36 0.078
sp|P14546|COX3_LEITA Cytochrome c oxidase subunit 3 (Cytoch... 35 0.10
sp|Q15643|TRIPB_HUMAN Thyroid receptor-interacting protein ... 35 0.13
sp|Q00798|RBP1_PLAVB Reticulocyte binding protein 1 precursor 35 0.13
sp|P12778|CYB_PARLI Cytochrome b 35 0.13
sp|P15547|CYB_STRPU Cytochrome b 34 0.30
sp|Q9R1T4|SEPT6_MOUSE Septin-6 34 0.30
sp|Q14141|SEPT6_HUMAN Septin-6 33 0.39
>sp|Q6PSC6|MATK_PHAVU Maturase K (Intron maturase)
Length = 513
Score = 37.7 bits (86), Expect = 0.021
Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 15/152 (9%)
Frame = -3
Query: 418 NLWNIMFVFSYWSIILLNVMISNHMFVPPIRVPFILYCHTVPKINIVANIINFWIFELSN 239
NL +I +F ++ L+ + NH IR+P+ ++ + I+ I+ +WI ++S
Sbjct: 123 NLQSIHSIFPFFEDKLIYL---NHK--SDIRIPYPIH------LEILVQILGYWIKDVSF 171
Query: 238 FESMHFIFYRFN-----FP-------FIS---CNLFLLLI*NGIQIYKLFFLCFKHISNF 104
F + F FY ++ FP F S +FL L + Y+ FL ++ S+
Sbjct: 172 FHVIRFFFYYYSNWNSLFPPKKGISTFFSKRNLRIFLFLYNLYVWEYESIFLFLRNKSSQ 231
Query: 103 LQINHMLCNGPFQFIYFHCTMFAILSFITSSC 8
LQ+ H F+ I+F+ ++ T +C
Sbjct: 232 LQLKHFRVF--FERIFFYEKRKHLVEISTKNC 261
>sp|Q6PP79|MATK_VIGSU Maturase K (Intron maturase)
Length = 504
Score = 37.0 bits (84), Expect = 0.035
Identities = 37/152 (24%), Positives = 69/152 (45%), Gaps = 15/152 (9%)
Frame = -3
Query: 418 NLWNIMFVFSYWSIILLNVMISNHMFVPPIRVPFILYCHTVPKINIVANIINFWIFELSN 239
NL +I +F ++ L+ + NH IR+P+ ++ + I+ I+ +WI ++S
Sbjct: 123 NLQSIHSIFPFFEDKLIYL---NHK--SDIRIPYPIH------LEILVQILRYWIKDVSF 171
Query: 238 FESMHFIFY------------RFNFPFIS---CNLFLLLI*NGIQIYKLFFLCFKHISNF 104
F + FY ++ F F S +FL L + Y+ FL ++ S+
Sbjct: 172 FHLIRLFFYYYYKLNSFFFPKKWIFTFFSKRNRRIFLFLYNLYVWEYESIFLFLRNKSSQ 231
Query: 103 LQINHMLCNGPFQFIYFHCTMFAILSFITSSC 8
LQ+ H FQ I+F+ + ++ T +C
Sbjct: 232 LQLKHFRVF--FQRIFFYEKIKHLVEISTKNC 261
>sp|Q35140|NU2M_NEUCR NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 583
Score = 35.8 bits (81), Expect = 0.078
Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 5/120 (4%)
Frame = -3
Query: 370 LNVMISNHMFVPPIRVPFILYCHTVPKINIVANIINFWIFELSNFESMHFIFYRFNFPFI 191
L+++I + + R+ +L T+ + + ++ +F S + FIFY + F
Sbjct: 322 LSLIIGTVVGLTQFRIKRLLAYSTISHLGFI--LLALSVFTQSVESTQAFIFYLIQYSFS 379
Query: 190 SCNLFLLLI*NGIQIYKLFFLCFKHISNFLQINHMLCNGPFQFI-----YFHCTMFAILS 26
+ N+F++LI G +Y + K N L IN N P Q I YF+ LS
Sbjct: 380 NLNVFIILITIGFSLYG-YVWNNKEYKNLLDIN----NSPVQLISQLKGYFYLNPLLSLS 434
>sp|P14546|COX3_LEITA Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
III)
Length = 284
Score = 35.4 bits (80), Expect = 0.10
Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 14/141 (9%)
Frame = -3
Query: 400 FVFSYWSIILLNVMISNHM-FVPPIRVPFILYCHTVPKINIVANIINFWIFELSNFESMH 224
FVF ++ I + N++I+ + FV + V F+L+ V + W+ L F +
Sbjct: 134 FVFYWYFIDIFNLLINTFLLFVSGLFVNFVLFLFWFRFFLCV--LFMLWVGILFGFLFLW 191
Query: 223 FIFYRFNFPFISCN-------LFLLLI*NGIQIYK---LFFLCFKHISNFLQINHMLCNG 74
+ F F++C+ LFL+ + + ++ L FLCF NFL ++
Sbjct: 192 NQVWEFALLFVTCSCGVFGSILFLIDLLHFSHVFLGIFLLFLCFSRCFNFLCMDTRFVFL 251
Query: 73 PFQFIYFH---CTMFAILSFI 20
+Y+H C F +L F+
Sbjct: 252 YVVCLYWHFVDCVWFFLLRFV 272
>sp|Q15643|TRIPB_HUMAN Thyroid receptor-interacting protein 11 (TRIP-11) (Golgi-associated
microtubule-binding protein 210) (GMAP-210) (Trip230)
(Clonal evolution related gene on chromosome 14)
Length = 1979
Score = 35.0 bits (79), Expect = 0.13
Identities = 34/166 (20%), Positives = 74/166 (44%), Gaps = 3/166 (1%)
Frame = +2
Query: 50 VEVDELKGTIAQHVVDLEEIRDVLKAEKEKFINLNAISNEQQKKITAYERKIKTIEDEMH 229
+E+ ELK I Q D +E +DVL + E+ L + N+++ I + + +++E+
Sbjct: 773 MEIAELKKNIEQMDTDHKETKDVLSSSLEEQKQLTQLINKKEIFIEKLKERSSKLQEELD 832
Query: 230 ALKVAKFKNPEXXXXXXXXXLRDSVAVKNKWHPNWWDKHMVTDHNIQQDNRPIRENKHDI 409
A KN LR ++ K++ + ++ ++++Q++ +RE +
Sbjct: 833 KYSQALRKN---------EILRQTIEEKDRSLGSMKEE----NNHLQEELERLREEQSRT 879
Query: 410 PKIPNRNTMGAEVVVACPNCQTMYSPAEIENHVNH---CIENQ*QN 538
+ + T+ + +A Q +E + H IE+Q Q+
Sbjct: 880 APVADPKTLDSVTELASEVSQLNTIKEHLEEEIKHHQKIIEDQNQS 925
>sp|Q00798|RBP1_PLAVB Reticulocyte binding protein 1 precursor
Length = 2833
Score = 35.0 bits (79), Expect = 0.13
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Frame = +2
Query: 53 EVDELKGTIAQ-HVVDLEEIRDVLKAEKEKFINLNAISNEQQKKITAYERKIKTIEDEMH 229
E+DEL I++ + +E DV K E +N +N K + E+K+K++ D MH
Sbjct: 2267 EMDELYRNISETKLKQMEHSTDVFKPMIELHKGMNETNN---KSLLEKEKKLKSVNDHMH 2323
Query: 230 ALKVAKFKN 256
+++ KN
Sbjct: 2324 SMEAEMIKN 2332
>sp|P12778|CYB_PARLI Cytochrome b
Length = 380
Score = 35.0 bits (79), Expect = 0.13
Identities = 35/152 (23%), Positives = 57/152 (37%), Gaps = 3/152 (1%)
Frame = -3
Query: 502 IFDFCWRIHCLTIGTSDYHLSSHRVSIWNLWNIMFVFSYWSIILLNVMISNHMFVPPIRV 323
+F C H IG Y+ S+++ WN+ I+F+ + + + V++ M V
Sbjct: 90 LFFICMYCH---IGRGLYYGGSNKIETWNVGVILFLVTVLTAFVGYVLVWGRMSFWAATV 146
Query: 322 PFILYCHTVPKINIVANIINFWI---FELSNFESMHFIFYRFNFPFISCNLFLLLI*NGI 152
+ V + V I W+ F + N F + F FPFI +
Sbjct: 147 ----IANLVTAVPCVGTTIVQWLWGGFSVDNATLTRFFAFHFLFPFIIA---------AL 193
Query: 151 QIYKLFFLCFKHISNFLQINHMLCNGPFQFIY 56
I L FL +N + +N PF Y
Sbjct: 194 AIIDLVFLHNSGANNPVGLNSNYDKAPFHIYY 225
>sp|P15547|CYB_STRPU Cytochrome b
Length = 380
Score = 33.9 bits (76), Expect = 0.30
Identities = 37/153 (24%), Positives = 58/153 (37%), Gaps = 3/153 (1%)
Frame = -3
Query: 502 IFDFCWRIHCLTIGTSDYHLSSHRVSIWNLWNIMFVFSYWSIILLNVMISNHMFVPPIRV 323
+F C H IG Y+ S +++ WN+ I+F+ + + + V++ M V
Sbjct: 90 LFFICMYCH---IGRGLYYGSYNKIETWNVGVILFLVTILTAFMGYVLVWGQMSFWAATV 146
Query: 322 PFILYCHTVPKINIVANIINFWI---FELSNFESMHFIFYRFNFPFISCNLFLLLI*NGI 152
+ V I + II W+ F + N F + F FPFI +
Sbjct: 147 ----ITNLVSAIPYIGTIIVQWLWGGFSVDNATLTRFFPFHFLFPFIIA---------AL 193
Query: 151 QIYKLFFLCFKHISNFLQINHMLCNGPFQFIYF 53
+ L FL +N N PF IYF
Sbjct: 194 AVIHLVFLHNSGANNPFAFNSNYDKAPFH-IYF 225
>sp|Q9R1T4|SEPT6_MOUSE Septin-6
Length = 434
Score = 33.9 bits (76), Expect = 0.30
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = +2
Query: 59 DELKGTIAQHVVDLE-EIRDVLKAEKEKFINLNAISNEQQKKITAYERKIKTIEDEMHAL 235
+E++ Q V + E E+++ K EKF L + E++KK+ E K K +++EM+A
Sbjct: 340 EEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQEEKKKL---EDKKKCLDEEMNAF 396
Query: 236 KVAK 247
K K
Sbjct: 397 KQRK 400
>sp|Q14141|SEPT6_HUMAN Septin-6
Length = 434
Score = 33.5 bits (75), Expect = 0.39
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +2
Query: 59 DELKGTIAQHVVDLE-EIRDVLKAEKEKFINLNAISNEQQKKITAYERKIKTIEDEMHAL 235
+E++ Q V + E E+++ K EKF L + +++KK+ E K K+++DE++A
Sbjct: 340 EEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKL---EDKKKSLDDEVNAF 396
Query: 236 KVAK 247
K K
Sbjct: 397 KQRK 400
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,854,510
Number of Sequences: 369166
Number of extensions: 1249046
Number of successful extensions: 4584
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4577
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4226258440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)