Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_009_B03
(836 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q6PP79|MATK_VIGSU Maturase K (Intron maturase) 39 0.014
sp|Q00798|RBP1_PLAVB Reticulocyte binding protein 1 precursor 39 0.014
sp|Q6PSC6|MATK_PHAVU Maturase K (Intron maturase) 39 0.018
sp|Q51UJ9|ATG11_MAGGR Autophagy-related protein 11 38 0.030
sp|P14546|COX3_LEITA Cytochrome c oxidase subunit 3 (Cytoch... 37 0.052
sp|Q35140|NU2M_NEUCR NADH-ubiquinone oxidoreductase chain 2... 35 0.20
sp|Q9C026|TRIM9_HUMAN Tripartite motif protein 9 (RING fing... 35 0.26
sp|P12778|CYB_PARLI Cytochrome b 35 0.26
sp|Q15643|TRIPB_HUMAN Thyroid receptor-interacting protein ... 35 0.33
sp|P04514|VN34_ROTBU Nonstructural RNA-binding protein 34 (... 34 0.44
>sp|Q6PP79|MATK_VIGSU Maturase K (Intron maturase)
Length = 504
Score = 39.3 bits (90), Expect = 0.014
Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 28/171 (16%)
Frame = -1
Query: 740 NLWNIMFVFSYWSIILLNVMISNHMFVPPIRVPFILYCHTVPKINIVANIINFWIFELSN 561
NL +I +F ++ L+ + NH IR+P+ ++ + I+ I+ +WI ++S
Sbjct: 123 NLQSIHSIFPFFEDKLIYL---NHK--SDIRIPYPIH------LEILVQILRYWIKDVSF 171
Query: 560 FESMHFIFY------------RFNFPFIS---CNLFLLLI*NGIQIYKLFFLCFKHISNF 426
F + FY ++ F F S +FL L + Y+ FL ++ S+
Sbjct: 172 FHLIRLFFYYYYKLNSFFFPKKWIFTFFSKRNRRIFLFLYNLYVWEYESIFLFLRNKSSQ 231
Query: 425 LQINHMLCNGPFQFIYFH-------------CTFCYFIFHNIHSLLFFHYV 312
LQ+ H FQ I+F+ C++ F F +I F HYV
Sbjct: 232 LQLKHFRVF--FQRIFFYEKIKHLVEISTKNCSYTLFFFKDI----FIHYV 276
>sp|Q00798|RBP1_PLAVB Reticulocyte binding protein 1 precursor
Length = 2833
Score = 39.3 bits (90), Expect = 0.014
Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Frame = +3
Query: 330 QAMNVMKDKIAKGAVEVDELKGTIAQ-HVVDLEEIRDVLKAEKEKFINLNAISNEQQKKI 506
Q M + DK+ + E+DEL I++ + +E DV K E +N +N K +
Sbjct: 2252 QNMLALYDKLNEEKREMDELYRNISETKLKQMEHSTDVFKPMIELHKGMNETNN---KSL 2308
Query: 507 TAYERKIKTIEDEMHALKVAKFKN 578
E+K+K++ D MH+++ KN
Sbjct: 2309 LEKEKKLKSVNDHMHSMEAEMIKN 2332
>sp|Q6PSC6|MATK_PHAVU Maturase K (Intron maturase)
Length = 513
Score = 38.9 bits (89), Expect = 0.018
Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 28/171 (16%)
Frame = -1
Query: 740 NLWNIMFVFSYWSIILLNVMISNHMFVPPIRVPFILYCHTVPKINIVANIINFWIFELSN 561
NL +I +F ++ L+ + NH IR+P+ ++ + I+ I+ +WI ++S
Sbjct: 123 NLQSIHSIFPFFEDKLIYL---NHK--SDIRIPYPIH------LEILVQILGYWIKDVSF 171
Query: 560 FESMHFIFYRFN-----FP-------FIS---CNLFLLLI*NGIQIYKLFFLCFKHISNF 426
F + F FY ++ FP F S +FL L + Y+ FL ++ S+
Sbjct: 172 FHVIRFFFYYYSNWNSLFPPKKGISTFFSKRNLRIFLFLYNLYVWEYESIFLFLRNKSSQ 231
Query: 425 LQINHMLCNGPFQFIYFH-------------CTFCYFIFHNIHSLLFFHYV 312
LQ+ H F+ I+F+ C++ F F + F HYV
Sbjct: 232 LQLKHFRVF--FERIFFYEKRKHLVEISTKNCSYTLFFFKD----TFIHYV 276
>sp|Q51UJ9|ATG11_MAGGR Autophagy-related protein 11
Length = 1407
Score = 38.1 bits (87), Expect = 0.030
Identities = 17/71 (23%), Positives = 40/71 (56%)
Frame = +3
Query: 336 MNVMKDKIAKGAVEVDELKGTIAQHVVDLEEIRDVLKAEKEKFINLNAISNEQQKKITAY 515
+N ++ ++A G ++DEL+ IAQ E +R L+ E++K + L +Q ++ +
Sbjct: 905 VNALEGELADGRKQLDELRTQIAQGETGSESLRTRLEEEEKKIVRLTEDLASKQSQVGSL 964
Query: 516 ERKIKTIEDEM 548
E +++ ++ +
Sbjct: 965 EEELRLFQERL 975
>sp|P14546|COX3_LEITA Cytochrome c oxidase subunit 3 (Cytochrome c oxidase polypeptide
III)
Length = 284
Score = 37.4 bits (85), Expect = 0.052
Identities = 34/135 (25%), Positives = 62/135 (45%), Gaps = 11/135 (8%)
Frame = -1
Query: 722 FVFSYWSIILLNVMISNHM-FVPPIRVPFILYCHTVPKINIVANIINFWIFELSNFESMH 546
FVF ++ I + N++I+ + FV + V F+L+ V + W+ L F +
Sbjct: 134 FVFYWYFIDIFNLLINTFLLFVSGLFVNFVLFLFWFRFFLCV--LFMLWVGILFGFLFLW 191
Query: 545 FIFYRFNFPFISCN-------LFLLLI*NGIQIYK---LFFLCFKHISNFLQINHMLCNG 396
+ F F++C+ LFL+ + + ++ L FLCF NFL ++
Sbjct: 192 NQVWEFALLFVTCSCGVFGSILFLIDLLHFSHVFLGIFLLFLCFSRCFNFLCMDTR---- 247
Query: 395 PFQFIYFHCTFCYFI 351
F F+Y C + +F+
Sbjct: 248 -FVFLYVVCLYWHFV 261
>sp|Q35140|NU2M_NEUCR NADH-ubiquinone oxidoreductase chain 2 (NADH dehydrogenase subunit
2)
Length = 583
Score = 35.4 bits (80), Expect = 0.20
Identities = 27/104 (25%), Positives = 48/104 (46%)
Frame = -1
Query: 692 LNVMISNHMFVPPIRVPFILYCHTVPKINIVANIINFWIFELSNFESMHFIFYRFNFPFI 513
L+++I + + R+ +L T+ + + ++ +F S + FIFY + F
Sbjct: 322 LSLIIGTVVGLTQFRIKRLLAYSTISHLGFI--LLALSVFTQSVESTQAFIFYLIQYSFS 379
Query: 512 SCNLFLLLI*NGIQIYKLFFLCFKHISNFLQINHMLCNGPFQFI 381
+ N+F++LI G +Y + K N L IN N P Q I
Sbjct: 380 NLNVFIILITIGFSLYG-YVWNNKEYKNLLDIN----NSPVQLI 418
>sp|Q9C026|TRIM9_HUMAN Tripartite motif protein 9 (RING finger protein 91)
Length = 710
Score = 35.0 bits (79), Expect = 0.26
Identities = 34/182 (18%), Positives = 74/182 (40%), Gaps = 19/182 (10%)
Frame = +3
Query: 330 QAMNVMKDKIAKGAVEVDELKGTIAQHVVDLEEIRDVLKAEKEKFIN-LNAISNEQQKKI 506
QA+N + D+ + + +L+ + Q + E L A+ + I+ LN + ++
Sbjct: 279 QALNGLSDRAKEAKEFLVQLRNMVQQIQENSVEFEACLVAQCDALIDALNRRKAQLLARV 338
Query: 507 TA-YERKIKTIEDEM---------------HALKVAKFKNPEXXXXXXXXXLRDSVAVKN 638
+E K+K + D++ + L+V K +P +R ++
Sbjct: 339 NKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEVIKENDPSGFLQISDALIRRVHLTED 398
Query: 639 KWHPNWWDKHMVTDHNIQQDNRPIRENKH--DIPKIPNRNTMGAEVVVACPNCQTMYSPA 812
+W M TD ++ DN P+ ++ H D ++ + + A ++ C T + A
Sbjct: 399 QWGKGTLTPRMTTDFDLSLDNSPLLQSIHQLDFVQVKASSPVPATPILQLEECCTHNNSA 458
Query: 813 EI 818
+
Sbjct: 459 TL 460
>sp|P12778|CYB_PARLI Cytochrome b
Length = 380
Score = 35.0 bits (79), Expect = 0.26
Identities = 35/152 (23%), Positives = 57/152 (37%), Gaps = 3/152 (1%)
Frame = -1
Query: 824 IFDFCWRIHCLTIGTSDYHLSSHRVSIWNLWNIMFVFSYWSIILLNVMISNHMFVPPIRV 645
+F C H IG Y+ S+++ WN+ I+F+ + + + V++ M V
Sbjct: 90 LFFICMYCH---IGRGLYYGGSNKIETWNVGVILFLVTVLTAFVGYVLVWGRMSFWAATV 146
Query: 644 PFILYCHTVPKINIVANIINFWI---FELSNFESMHFIFYRFNFPFISCNLFLLLI*NGI 474
+ V + V I W+ F + N F + F FPFI +
Sbjct: 147 ----IANLVTAVPCVGTTIVQWLWGGFSVDNATLTRFFAFHFLFPFIIA---------AL 193
Query: 473 QIYKLFFLCFKHISNFLQINHMLCNGPFQFIY 378
I L FL +N + +N PF Y
Sbjct: 194 AIIDLVFLHNSGANNPVGLNSNYDKAPFHIYY 225
>sp|Q15643|TRIPB_HUMAN Thyroid receptor-interacting protein 11 (TRIP-11) (Golgi-associated
microtubule-binding protein 210) (GMAP-210) (Trip230)
(Clonal evolution related gene on chromosome 14)
Length = 1979
Score = 34.7 bits (78), Expect = 0.33
Identities = 31/158 (19%), Positives = 69/158 (43%)
Frame = +3
Query: 363 KGAVEVDELKGTIAQHVVDLEEIRDVLKAEKEKFINLNAISNEQQKKITAYERKIKTIED 542
K +E+ ELK I Q D +E +DVL + E+ L + N+++ I + + +++
Sbjct: 770 KKDMEIAELKKNIEQMDTDHKETKDVLSSSLEEQKQLTQLINKKEIFIEKLKERSSKLQE 829
Query: 543 EMHALKVAKFKNPEXXXXXXXXXLRDSVAVKNKWHPNWWDKHMVTDHNIQQDNRPIRENK 722
E+ A KN LR ++ K++ + ++ ++++Q++ +RE +
Sbjct: 830 ELDKYSQALRKN---------EILRQTIEEKDRSLGSMKEE----NNHLQEELERLREEQ 876
Query: 723 HDIPKIPNRNTMGAEVVVACPNCQTMYSPAEIENHVNH 836
+ + T+ + +A Q +E + H
Sbjct: 877 SRTAPVADPKTLDSVTELASEVSQLNTIKEHLEEEIKH 914
>sp|P04514|VN34_ROTBU Nonstructural RNA-binding protein 34 (NS34) (NCVP4) (NS2/VP9)
Length = 313
Score = 34.3 bits (77), Expect = 0.44
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Frame = +3
Query: 342 VMKDKIAKGAVEVDE--LKGTIAQHVVDLEEIRDVLKAEKEKFINLNAISNEQQKKITAY 515
+MKDKI +GAVEVD+ ++ + VD + D L + +F +L NE K T +
Sbjct: 142 LMKDKIERGAVEVDDSFVEEKMEVDTVDWKSRYDQL---ERRFESLKQRVNE---KYTTW 195
Query: 516 ERKIKTIEDEMHALK 560
+K K + + M++L+
Sbjct: 196 VQKAKKVNENMYSLQ 210
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,379,651
Number of Sequences: 369166
Number of extensions: 1170311
Number of successful extensions: 4466
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4455
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8148988185
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)