DrC_00336
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00336 (908 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P53108|YGR1_YEAST Hypothetical 34.8 kDa protein in SUT1-... 40 0.012 sp|P59543|T2R49_HUMAN Taste receptor type 2 member 49 (T2R4... 37 0.100 sp|Q646E3|T2R49_PANPA Taste receptor type 2 member 49 (T2R49) 37 0.100 sp|Q646C2|T2R49_PANTR Taste receptor type 2 member 49 (T2R49) 37 0.100 sp|Q646G1|T2R49_PAPHA Taste receptor type 2 member 49 (T2R49) 35 0.38 sp|O34341|YEBC_BACSU Hypothetical protein yebC 34 0.50 sp|P76236|YEAI_ECOLI Inner membrane protein yeaI 34 0.65 sp|Q3S8M4|ELOV4_MACMU Elongation of very long chain fatty a... 34 0.65 sp|Q9KVF1|Y195_VIBCH Hypothetical protein VC0195 33 0.84 sp|Q646A0|T2R49_GORGO Taste receptor type 2 member 49 (T2R49) 33 1.4
>sp|P53108|YGR1_YEAST Hypothetical 34.8 kDa protein in SUT1-RCK1 intergenic region Length = 310 Score = 39.7 bits (91), Expect = 0.012 Identities = 49/218 (22%), Positives = 81/218 (37%), Gaps = 23/218 (10%) Frame = +3 Query: 186 FYQSLFDIDTKDVLRRIVRSFVPSPHYSYLTSVINKKPDLYGPFWTCXXXXXXXXXXGNI 365 +Y F ID +R+ S V + + + DLYG W Sbjct: 96 YYSKYFQIDLTQFKKRL--SAVLTFRNDHNSESNEDNTDLYGAVWITATVVMINFTMSRG 153 Query: 366 ANYFQFH-------GQKHFWRYEFRKLSLAAMSIYTYWWIMPLFIWGVSKLKKINE---- 512 N+ G+ +F+KL + Y Y + +P V + +E Sbjct: 154 LNFIISDVIEGVKTGEDIDRASQFKKLLHSIWLFYGYTFGVPFITMQVLNRDEHSERNRS 213 Query: 513 -SSFLELLTLYGYSLAIYIPISMLWVI--------QISWFQWLLVIIALTLSGIVLIMSV 665 S EL+++YGY+ I+IP+ ++ I + QW +V + S L + Sbjct: 214 FKSVPELISVYGYANLIWIPVCVILNILDMSKRLRTVQAIQWAIVALGWAQSSYFLNSQI 273 Query: 666 WSNYK---DVNKQITFMLITVVAIMHTLLAVGFMLYFF 770 SN N + + +I VVA +HTL + F F Sbjct: 274 SSNNNTETQSNGKFSLSIIVVVA-LHTLFCLLFRFIIF 310
>sp|P59543|T2R49_HUMAN Taste receptor type 2 member 49 (T2R49) (T2R56) Length = 309 Score = 36.6 bits (83), Expect = 0.100 Identities = 19/68 (27%), Positives = 32/68 (47%) Frame = +3 Query: 570 ISMLWVIQISWFQWLLVIIALTLSGIVLIMSVWSNYKDVNKQITFMLITVVAIMHTLLAV 749 + +LWVI + W+ +L + L I+ I + W+ V + L T ++I + L V Sbjct: 56 VGLLWVILLHWYSTVLNPTSSNLKVIIFISNAWA----VTNHFSIWLATSLSIFYLLKIV 111 Query: 750 GFMLYFFH 773 F FH Sbjct: 112 NFSRLIFH 119
>sp|Q646E3|T2R49_PANPA Taste receptor type 2 member 49 (T2R49) Length = 309 Score = 36.6 bits (83), Expect = 0.100 Identities = 19/68 (27%), Positives = 32/68 (47%) Frame = +3 Query: 570 ISMLWVIQISWFQWLLVIIALTLSGIVLIMSVWSNYKDVNKQITFMLITVVAIMHTLLAV 749 + +LWVI + W+ +L + L I+ I + W+ V + L T ++I + L V Sbjct: 56 VGLLWVILLHWYSTVLNPTSSNLKVIIFISNAWA----VTNHFSIWLATSLSIFYLLKIV 111 Query: 750 GFMLYFFH 773 F FH Sbjct: 112 NFSRLIFH 119
>sp|Q646C2|T2R49_PANTR Taste receptor type 2 member 49 (T2R49) Length = 309 Score = 36.6 bits (83), Expect = 0.100 Identities = 19/68 (27%), Positives = 32/68 (47%) Frame = +3 Query: 570 ISMLWVIQISWFQWLLVIIALTLSGIVLIMSVWSNYKDVNKQITFMLITVVAIMHTLLAV 749 + +LWVI + W+ +L + L I+ I + W+ V + L T ++I + L V Sbjct: 56 VGLLWVILLHWYSTVLNPTSSNLKVIIFISNAWA----VTNHFSIWLATSLSIFYLLKIV 111 Query: 750 GFMLYFFH 773 F FH Sbjct: 112 NFSRLIFH 119
>sp|Q646G1|T2R49_PAPHA Taste receptor type 2 member 49 (T2R49) Length = 309 Score = 34.7 bits (78), Expect = 0.38 Identities = 18/68 (26%), Positives = 31/68 (45%) Frame = +3 Query: 570 ISMLWVIQISWFQWLLVIIALTLSGIVLIMSVWSNYKDVNKQITFMLITVVAIMHTLLAV 749 + +LWVI + W+ +L + L + I + W+ V + L T ++I + L V Sbjct: 56 VGLLWVILLHWYSTVLNPTSSNLKVTIFISNAWA----VTNHFSIWLATSLSIFYLLKIV 111 Query: 750 GFMLYFFH 773 F FH Sbjct: 112 NFSRLIFH 119
>sp|O34341|YEBC_BACSU Hypothetical protein yebC Length = 267 Score = 34.3 bits (77), Expect = 0.50 Identities = 32/146 (21%), Positives = 62/146 (42%), Gaps = 16/146 (10%) Frame = +3 Query: 360 NIANYFQFH---------GQKHFWRYEFRKLSLAAMSIYTYWWIMPLFIWGVSKLKKINE 512 +I N+FQ G++H Y+ + L + I+ + +M IW VS+ + Sbjct: 108 SIGNWFQLKASWNRPLGFGERHHAFYDGFLVVLVYLLIF--FAVMVFAIWAVSRYMMKQK 165 Query: 513 SSFLELLTLYGYSLAIYIPISMLWVI-------QISWFQWLLVIIALTLSGIVLIMSVWS 671 +F E + G L I +S+LW+I ++ +L++ ++ + + V+ Sbjct: 166 VTFREAAAVLGSLLVPVIAVSILWLIFAIVNIPMLTVLFTVLILFSIFFIIALYVQRVYQ 225 Query: 672 NYKDVNKQITFMLITVVAIMHTLLAV 749 +D + + VVAI AV Sbjct: 226 AAQDAPIDYIYCVFAVVAIALLFTAV 251
>sp|P76236|YEAI_ECOLI Inner membrane protein yeaI Length = 491 Score = 33.9 bits (76), Expect = 0.65 Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 6/159 (3%) Frame = +3 Query: 423 LSLAAMSIYTYWWIMPLFIWGVSKLKKINESSFLELLTLYGYSLAIYIPISMLW-----V 587 +SL ++ T+ ++ + G KLK + F LLTL I I+ L+ V Sbjct: 29 ISLPSIKSSTHIALLFMVSMGTQKLKAQSFFIFSLLLTL------ILFCITTLYNENTNV 82 Query: 588 IQISWFQWLLVIIALTLSGIVLIMSVWSNYKDVNKQITFMLITVVAIMHTLLAVGFMLYF 767 I +L+V++AL V+ + + Y NKQI LI +A + L+ + + Sbjct: 83 KLIPQMNYLMVVVALFFLNAVIFLFMLMKYF-TNKQILPTLILSLAFLSGLIYLVETIVI 141 Query: 768 FHVPNSPNSEVVPKSSNKSIVNM-*QVPFCQLCVALRFC 881 H P + ++ + KS++ SI + Q+ F L FC Sbjct: 142 IHKPINGSTLIQTKSNDVSIFYIFRQLSFICLTSLALFC 180
>sp|Q3S8M4|ELOV4_MACMU Elongation of very long chain fatty acids protein 4 sp|Q95K73|ELOV4_MACFA Elongation of very long chain fatty acids protein 4 Length = 314 Score = 33.9 bits (76), Expect = 0.65 Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 2/120 (1%) Frame = +3 Query: 441 SIYTYWWIMPLFIWGVSKLKKINESSFLELLTLYGYSLAIYIPISMLWVIQISWFQWLLV 620 +++T WWI ++ G +SF+ ++ Y LA + P W+ + W++ L Sbjct: 164 TMFTLWWIGIKWVAGGQAFFGAQMNSFIHVIMYSYYGLAAFGP----WIQKYLWWKRYLT 219 Query: 621 IIALTLSGIVLIMSVWSNYKD--VNKQITFMLITVVAIMHTLLAVGFMLYFFHVPNSPNS 794 ++ L + + + S Y D K + + LI AI L + F + + P P + Sbjct: 220 MLQLVQFHVTIGHTALSLYTDCPFPKWMHWALI-AYAISFIFLFLNFYIRTYKEPKKPKT 278
>sp|Q9KVF1|Y195_VIBCH Hypothetical protein VC0195 Length = 302 Score = 33.5 bits (75), Expect = 0.84 Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 9/94 (9%) Frame = +3 Query: 417 RKLSLAAMSIYTYWWIMPLFIWGVSKLKKINESSFLELLT---LYGY-SLAIYIPISMLW 584 +K L A+S YT W I P++ K + S LE+L+ ++ + LA+ I + W Sbjct: 11 KKGILLAISAYTMWGIAPIY------FKALGAVSALEILSHRVVWSFVLLAVLIHLGRRW 64 Query: 585 -----VIQISWFQWLLVIIALTLSGIVLIMSVWS 671 V+ WLL++ AL + G LI +WS Sbjct: 65 RSVVGVVHTPRKFWLLLVTALLVGGNWLIF-IWS 97
>sp|Q646A0|T2R49_GORGO Taste receptor type 2 member 49 (T2R49) Length = 309 Score = 32.7 bits (73), Expect = 1.4 Identities = 17/68 (25%), Positives = 30/68 (44%) Frame = +3 Query: 570 ISMLWVIQISWFQWLLVIIALTLSGIVLIMSVWSNYKDVNKQITFMLITVVAIMHTLLAV 749 + +LWVI + W+ +L + L + I + W+ V + L ++I + L V Sbjct: 56 VGLLWVILLHWYSTVLNPTSSNLKVTIFISNAWA----VTNHFSIWLAASLSIFYLLKIV 111 Query: 750 GFMLYFFH 773 F FH Sbjct: 112 NFSRLIFH 119
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,773,953
Number of Sequences: 369166
Number of extensions: 2256836
Number of successful extensions: 6353
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6346
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9222552960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
