Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_P08
(824 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53108|YGR1_YEAST Hypothetical 34.8 kDa protein in SUT1-... 40 0.010
sp|P59543|T2R49_HUMAN Taste receptor type 2 member 49 (T2R4... 37 0.086
sp|Q646E3|T2R49_PANPA Taste receptor type 2 member 49 (T2R49) 37 0.086
sp|Q646C2|T2R49_PANTR Taste receptor type 2 member 49 (T2R49) 37 0.086
sp|Q646G1|T2R49_PAPHA Taste receptor type 2 member 49 (T2R49) 35 0.33
sp|O34341|YEBC_BACSU Hypothetical protein yebC 34 0.43
sp|Q3S8M4|ELOV4_MACMU Elongation of very long chain fatty a... 34 0.56
sp|Q9KVF1|Y195_VIBCH Hypothetical protein VC0195 33 0.73
sp|Q646A0|T2R49_GORGO Taste receptor type 2 member 49 (T2R49) 33 1.2
sp|P0A9P6|DEAD_ECOLI Cold-shock DEAD-box protein A (ATP-dep... 32 1.6
>sp|P53108|YGR1_YEAST Hypothetical 34.8 kDa protein in SUT1-RCK1 intergenic region
Length = 310
Score = 39.7 bits (91), Expect = 0.010
Identities = 49/218 (22%), Positives = 81/218 (37%), Gaps = 23/218 (10%)
Frame = +3
Query: 186 FYQSLFDIDTKDVLRRIVRSFVPSPHYSYLTSVINKKPDLYGPFWTCXXXXXXXXXXGNI 365
+Y F ID +R+ S V + + + DLYG W
Sbjct: 96 YYSKYFQIDLTQFKKRL--SAVLTFRNDHNSESNEDNTDLYGAVWITATVVMINFTMSRG 153
Query: 366 ANYFQFH-------GQKHFWRYEFRKLSLAAMSIYTYWWIMPLFIWGVSKLKKINE---- 512
N+ G+ +F+KL + Y Y + +P V + +E
Sbjct: 154 LNFIISDVIEGVKTGEDIDRASQFKKLLHSIWLFYGYTFGVPFITMQVLNRDEHSERNRS 213
Query: 513 -SSFLELLTLYGYSLAIYIPISMLWVI--------QISWFQWLLVIIALTLSGIVLIMSV 665
S EL+++YGY+ I+IP+ ++ I + QW +V + S L +
Sbjct: 214 FKSVPELISVYGYANLIWIPVCVILNILDMSKRLRTVQAIQWAIVALGWAQSSYFLNSQI 273
Query: 666 WSNYK---DVNKQITFMLITVVAIMHTLLAVGFMLYFF 770
SN N + + +I VVA +HTL + F F
Sbjct: 274 SSNNNTETQSNGKFSLSIIVVVA-LHTLFCLLFRFIIF 310
>sp|P59543|T2R49_HUMAN Taste receptor type 2 member 49 (T2R49) (T2R56)
Length = 309
Score = 36.6 bits (83), Expect = 0.086
Identities = 19/68 (27%), Positives = 32/68 (47%)
Frame = +3
Query: 570 ISMLWVIQISWFQWLLVIIALTLSGIVLIMSVWSNYKDVNKQITFMLITVVAIMHTLLAV 749
+ +LWVI + W+ +L + L I+ I + W+ V + L T ++I + L V
Sbjct: 56 VGLLWVILLHWYSTVLNPTSSNLKVIIFISNAWA----VTNHFSIWLATSLSIFYLLKIV 111
Query: 750 GFMLYFFH 773
F FH
Sbjct: 112 NFSRLIFH 119
>sp|Q646E3|T2R49_PANPA Taste receptor type 2 member 49 (T2R49)
Length = 309
Score = 36.6 bits (83), Expect = 0.086
Identities = 19/68 (27%), Positives = 32/68 (47%)
Frame = +3
Query: 570 ISMLWVIQISWFQWLLVIIALTLSGIVLIMSVWSNYKDVNKQITFMLITVVAIMHTLLAV 749
+ +LWVI + W+ +L + L I+ I + W+ V + L T ++I + L V
Sbjct: 56 VGLLWVILLHWYSTVLNPTSSNLKVIIFISNAWA----VTNHFSIWLATSLSIFYLLKIV 111
Query: 750 GFMLYFFH 773
F FH
Sbjct: 112 NFSRLIFH 119
>sp|Q646C2|T2R49_PANTR Taste receptor type 2 member 49 (T2R49)
Length = 309
Score = 36.6 bits (83), Expect = 0.086
Identities = 19/68 (27%), Positives = 32/68 (47%)
Frame = +3
Query: 570 ISMLWVIQISWFQWLLVIIALTLSGIVLIMSVWSNYKDVNKQITFMLITVVAIMHTLLAV 749
+ +LWVI + W+ +L + L I+ I + W+ V + L T ++I + L V
Sbjct: 56 VGLLWVILLHWYSTVLNPTSSNLKVIIFISNAWA----VTNHFSIWLATSLSIFYLLKIV 111
Query: 750 GFMLYFFH 773
F FH
Sbjct: 112 NFSRLIFH 119
>sp|Q646G1|T2R49_PAPHA Taste receptor type 2 member 49 (T2R49)
Length = 309
Score = 34.7 bits (78), Expect = 0.33
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +3
Query: 570 ISMLWVIQISWFQWLLVIIALTLSGIVLIMSVWSNYKDVNKQITFMLITVVAIMHTLLAV 749
+ +LWVI + W+ +L + L + I + W+ V + L T ++I + L V
Sbjct: 56 VGLLWVILLHWYSTVLNPTSSNLKVTIFISNAWA----VTNHFSIWLATSLSIFYLLKIV 111
Query: 750 GFMLYFFH 773
F FH
Sbjct: 112 NFSRLIFH 119
>sp|O34341|YEBC_BACSU Hypothetical protein yebC
Length = 267
Score = 34.3 bits (77), Expect = 0.43
Identities = 32/146 (21%), Positives = 62/146 (42%), Gaps = 16/146 (10%)
Frame = +3
Query: 360 NIANYFQFH---------GQKHFWRYEFRKLSLAAMSIYTYWWIMPLFIWGVSKLKKINE 512
+I N+FQ G++H Y+ + L + I+ + +M IW VS+ +
Sbjct: 108 SIGNWFQLKASWNRPLGFGERHHAFYDGFLVVLVYLLIF--FAVMVFAIWAVSRYMMKQK 165
Query: 513 SSFLELLTLYGYSLAIYIPISMLWVI-------QISWFQWLLVIIALTLSGIVLIMSVWS 671
+F E + G L I +S+LW+I ++ +L++ ++ + + V+
Sbjct: 166 VTFREAAAVLGSLLVPVIAVSILWLIFAIVNIPMLTVLFTVLILFSIFFIIALYVQRVYQ 225
Query: 672 NYKDVNKQITFMLITVVAIMHTLLAV 749
+D + + VVAI AV
Sbjct: 226 AAQDAPIDYIYCVFAVVAIALLFTAV 251
>sp|Q3S8M4|ELOV4_MACMU Elongation of very long chain fatty acids protein 4
sp|Q95K73|ELOV4_MACFA Elongation of very long chain fatty acids protein 4
Length = 314
Score = 33.9 bits (76), Expect = 0.56
Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 2/120 (1%)
Frame = +3
Query: 441 SIYTYWWIMPLFIWGVSKLKKINESSFLELLTLYGYSLAIYIPISMLWVIQISWFQWLLV 620
+++T WWI ++ G +SF+ ++ Y LA + P W+ + W++ L
Sbjct: 164 TMFTLWWIGIKWVAGGQAFFGAQMNSFIHVIMYSYYGLAAFGP----WIQKYLWWKRYLT 219
Query: 621 IIALTLSGIVLIMSVWSNYKD--VNKQITFMLITVVAIMHTLLAVGFMLYFFHVPNSPNS 794
++ L + + + S Y D K + + LI AI L + F + + P P +
Sbjct: 220 MLQLVQFHVTIGHTALSLYTDCPFPKWMHWALI-AYAISFIFLFLNFYIRTYKEPKKPKT 278
>sp|Q9KVF1|Y195_VIBCH Hypothetical protein VC0195
Length = 302
Score = 33.5 bits (75), Expect = 0.73
Identities = 29/94 (30%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Frame = +3
Query: 417 RKLSLAAMSIYTYWWIMPLFIWGVSKLKKINESSFLELLT---LYGY-SLAIYIPISMLW 584
+K L A+S YT W I P++ K + S LE+L+ ++ + LA+ I + W
Sbjct: 11 KKGILLAISAYTMWGIAPIY------FKALGAVSALEILSHRVVWSFVLLAVLIHLGRRW 64
Query: 585 -----VIQISWFQWLLVIIALTLSGIVLIMSVWS 671
V+ WLL++ AL + G LI +WS
Sbjct: 65 RSVVGVVHTPRKFWLLLVTALLVGGNWLIF-IWS 97
>sp|Q646A0|T2R49_GORGO Taste receptor type 2 member 49 (T2R49)
Length = 309
Score = 32.7 bits (73), Expect = 1.2
Identities = 17/68 (25%), Positives = 30/68 (44%)
Frame = +3
Query: 570 ISMLWVIQISWFQWLLVIIALTLSGIVLIMSVWSNYKDVNKQITFMLITVVAIMHTLLAV 749
+ +LWVI + W+ +L + L + I + W+ V + L ++I + L V
Sbjct: 56 VGLLWVILLHWYSTVLNPTSSNLKVTIFISNAWA----VTNHFSIWLAASLSIFYLLKIV 111
Query: 750 GFMLYFFH 773
F FH
Sbjct: 112 NFSRLIFH 119
>sp|P0A9P6|DEAD_ECOLI Cold-shock DEAD-box protein A (ATP-dependent RNA helicase deaD)
sp|P0A9P8|DEAD_SHIFL Cold-shock DEAD-box protein A (ATP-dependent RNA helicase deaD)
sp|P0A9P7|DEAD_ECOL6 Cold-shock DEAD-box protein A (ATP-dependent RNA helicase deaD)
Length = 629
Score = 32.3 bits (72), Expect = 1.6
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +3
Query: 195 SLFDIDTKDVLRRIVRSFVPSPHYSYLTSVINKKPDLYGPFWT 323
+LF + +RRI R F+ P + S + +PD+ +WT
Sbjct: 184 ALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWT 226
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,682,055
Number of Sequences: 369166
Number of extensions: 2005628
Number of successful extensions: 5889
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5882
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7956112725
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)