Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_A22
(394 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P59543|T2R49_HUMAN Taste receptor type 2 member 49 (T2R4... 37 0.019
sp|Q646E3|T2R49_PANPA Taste receptor type 2 member 49 (T2R49) 37 0.019
sp|Q646C2|T2R49_PANTR Taste receptor type 2 member 49 (T2R49) 37 0.019
sp|P53108|YGR1_YEAST Hypothetical 34.8 kDa protein in SUT1-... 35 0.041
sp|Q646G1|T2R49_PAPHA Taste receptor type 2 member 49 (T2R49) 35 0.071
sp|Q646A0|T2R49_GORGO Taste receptor type 2 member 49 (T2R49) 33 0.27
sp|P20633|YTSF_SPICI Hypothetical 23.8 kDa protein in tsf 3... 32 0.35
sp|Q645V6|T2R49_PONPY Taste receptor type 2 member 49 (T2R49) 32 0.35
sp|Q921A2|MYCT_RAT Proton myo-inositol cotransporter (H(+)-... 32 0.60
sp|P77405|CITT_ECOLI Citrate carrier (Citrate transporter) ... 32 0.60
>sp|P59543|T2R49_HUMAN Taste receptor type 2 member 49 (T2R49) (T2R56)
Length = 309
Score = 36.6 bits (83), Expect = 0.019
Identities = 19/68 (27%), Positives = 32/68 (47%)
Frame = +2
Query: 56 ISMLWVIQISWFQWLLVIIALTLSGIVLIMSVWSNYKDVNKQITFMLITVVAIMHTLLAV 235
+ +LWVI + W+ +L + L I+ I + W+ V + L T ++I + L V
Sbjct: 56 VGLLWVILLHWYSTVLNPTSSNLKVIIFISNAWA----VTNHFSIWLATSLSIFYLLKIV 111
Query: 236 GFMLYFFH 259
F FH
Sbjct: 112 NFSRLIFH 119
>sp|Q646E3|T2R49_PANPA Taste receptor type 2 member 49 (T2R49)
Length = 309
Score = 36.6 bits (83), Expect = 0.019
Identities = 19/68 (27%), Positives = 32/68 (47%)
Frame = +2
Query: 56 ISMLWVIQISWFQWLLVIIALTLSGIVLIMSVWSNYKDVNKQITFMLITVVAIMHTLLAV 235
+ +LWVI + W+ +L + L I+ I + W+ V + L T ++I + L V
Sbjct: 56 VGLLWVILLHWYSTVLNPTSSNLKVIIFISNAWA----VTNHFSIWLATSLSIFYLLKIV 111
Query: 236 GFMLYFFH 259
F FH
Sbjct: 112 NFSRLIFH 119
>sp|Q646C2|T2R49_PANTR Taste receptor type 2 member 49 (T2R49)
Length = 309
Score = 36.6 bits (83), Expect = 0.019
Identities = 19/68 (27%), Positives = 32/68 (47%)
Frame = +2
Query: 56 ISMLWVIQISWFQWLLVIIALTLSGIVLIMSVWSNYKDVNKQITFMLITVVAIMHTLLAV 235
+ +LWVI + W+ +L + L I+ I + W+ V + L T ++I + L V
Sbjct: 56 VGLLWVILLHWYSTVLNPTSSNLKVIIFISNAWA----VTNHFSIWLATSLSIFYLLKIV 111
Query: 236 GFMLYFFH 259
F FH
Sbjct: 112 NFSRLIFH 119
>sp|P53108|YGR1_YEAST Hypothetical 34.8 kDa protein in SUT1-RCK1 intergenic region
Length = 310
Score = 35.4 bits (80), Expect = 0.041
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 11/93 (11%)
Frame = +2
Query: 11 ELLTLYGYSLAIYIPISMLWVI--------QISWFQWLLVIIALTLSGIVLIMSVWSNYK 166
EL+++YGY+ I+IP+ ++ I + QW +V + S L + SN
Sbjct: 219 ELISVYGYANLIWIPVCVILNILDMSKRLRTVQAIQWAIVALGWAQSSYFLNSQISSNNN 278
Query: 167 ---DVNKQITFMLITVVAIMHTLLAVGFMLYFF 256
N + + +I VVA +HTL + F F
Sbjct: 279 TETQSNGKFSLSIIVVVA-LHTLFCLLFRFIIF 310
>sp|Q646G1|T2R49_PAPHA Taste receptor type 2 member 49 (T2R49)
Length = 309
Score = 34.7 bits (78), Expect = 0.071
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = +2
Query: 56 ISMLWVIQISWFQWLLVIIALTLSGIVLIMSVWSNYKDVNKQITFMLITVVAIMHTLLAV 235
+ +LWVI + W+ +L + L + I + W+ V + L T ++I + L V
Sbjct: 56 VGLLWVILLHWYSTVLNPTSSNLKVTIFISNAWA----VTNHFSIWLATSLSIFYLLKIV 111
Query: 236 GFMLYFFH 259
F FH
Sbjct: 112 NFSRLIFH 119
>sp|Q646A0|T2R49_GORGO Taste receptor type 2 member 49 (T2R49)
Length = 309
Score = 32.7 bits (73), Expect = 0.27
Identities = 17/68 (25%), Positives = 30/68 (44%)
Frame = +2
Query: 56 ISMLWVIQISWFQWLLVIIALTLSGIVLIMSVWSNYKDVNKQITFMLITVVAIMHTLLAV 235
+ +LWVI + W+ +L + L + I + W+ V + L ++I + L V
Sbjct: 56 VGLLWVILLHWYSTVLNPTSSNLKVTIFISNAWA----VTNHFSIWLAASLSIFYLLKIV 111
Query: 236 GFMLYFFH 259
F FH
Sbjct: 112 NFSRLIFH 119
>sp|P20633|YTSF_SPICI Hypothetical 23.8 kDa protein in tsf 3'region (Protein X)
Length = 211
Score = 32.3 bits (72), Expect = 0.35
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Frame = +2
Query: 71 VIQISWFQWLLVIIALTLSGIVLIMSVWSNYKD--VNKQITFMLITVVAIMHTLLAVGFM 244
+I IS +L V+++L++ G LI +K +NK+I +L TV+ I ++ +GF+
Sbjct: 9 IIAISMAAFLFVVVSLSIIGY-LISFTKREFKPRFINKKILIILFTVLGINLPIVILGFL 67
Query: 245 LYF 253
F
Sbjct: 68 FQF 70
>sp|Q645V6|T2R49_PONPY Taste receptor type 2 member 49 (T2R49)
Length = 309
Score = 32.3 bits (72), Expect = 0.35
Identities = 16/68 (23%), Positives = 31/68 (45%)
Frame = +2
Query: 56 ISMLWVIQISWFQWLLVIIALTLSGIVLIMSVWSNYKDVNKQITFMLITVVAIMHTLLAV 235
+ +LWVI + W+ +L + +L + + + W+ V + L T ++I + V
Sbjct: 56 VGLLWVILLHWYSTVLNPTSSSLKVTIFVSNAWA----VTNHFSIWLATSLSIFYLRKIV 111
Query: 236 GFMLYFFH 259
F FH
Sbjct: 112 NFSRLIFH 119
>sp|Q921A2|MYCT_RAT Proton myo-inositol cotransporter (H(+)-myo-inositol cotransporter)
(Hmit)
Length = 618
Score = 31.6 bits (70), Expect = 0.60
Identities = 24/91 (26%), Positives = 36/91 (39%)
Frame = +2
Query: 95 WLLVIIALTLSGIVLIMSVWSNYKDVNKQITFMLITVVAIMHTLLAVGFMLYFFHVPNSP 274
WL I A T + I ++ VW K +++TF + + T+LA+GF+L P
Sbjct: 335 WLASITAFT-NFIFTLVGVWLVEKVGRRKLTFGSLAGTTVALTILALGFLLSAQVSPRVT 393
Query: 275 NSEVVPKSSNKSIVNM*QVPFCQLCVALRFC 367
P N + C L FC
Sbjct: 394 FRPTAPSGQNATCTEYSYCNECMLDPDCGFC 424
>sp|P77405|CITT_ECOLI Citrate carrier (Citrate transporter) (Citrate/succinate
antiporter)
Length = 487
Score = 31.6 bits (70), Expect = 0.60
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +2
Query: 56 ISMLWVIQISWFQWLLVIIALTLSGIVLIMSVWSNYKDVNKQIT 187
+S + IQISW QW L L + I+LI++ W +Y +IT
Sbjct: 223 VSKIAGIQISWLQWFLCF--LPVGVILLIIAPWLSYVLYKPEIT 264
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,501,331
Number of Sequences: 369166
Number of extensions: 953139
Number of successful extensions: 3283
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3282
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1721094280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)