Planaria EST Database

DrC_00318

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00318
         (875 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P28234|CXA5_RAT  Gap junction alpha-5 protein (Connexin-4...    31   4.0  
sp|Q06643|TNFC_HUMAN  Lymphotoxin-beta (LT-beta) (Tumor necr...    31   4.0  
sp|Q862Z7|TNFC_PANTR  Lymphotoxin-beta (LT-beta) (Tumor necr...    31   4.0  
sp|Q5E9W5|G3ST4_BOVIN  Galactose-3-O-sulfotransferase 4 (Gal...    30   6.7  
sp|Q89AW8|RNFC_BUCBP  Electron transport complex protein rnfC      30   6.7  
sp|Q8GC87|FDHB_DESGI  Formate dehydrogenase beta subunit (FD...    30   8.8  

>sp|P28234|CXA5_RAT Gap junction alpha-5 protein (Connexin-40) (Cx40)
          Length = 356

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = -3

Query: 783 EAVVQERQGIKHTGSG*TATPRQAI*PPIDIP*TLK-GPNPSFFAQFSKT*VSNINAPPI 607
           + + + RQG KH   G + +  Q + PP D    LK  P+  FF+ FS    S  N  P+
Sbjct: 235 QRLAKSRQGDKHQLLGPSTSLVQGLTPPPDFNQCLKNSPDEKFFSDFSNNMGSRKNPDPL 294

Query: 606 TNKSDRN 586
             +   N
Sbjct: 295 ATEEVPN 301

>sp|Q06643|TNFC_HUMAN Lymphotoxin-beta (LT-beta) (Tumor necrosis factor C) (TNF-C) (Tumor
           necrosis factor ligand superfamily member 3)
          Length = 244

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 14/69 (20%)
 Frame = +2

Query: 542 YGSRKPP---DQKGSSLKFLSDLFVMGGA-------LILE----TQVLLNWAKNEGFGPL 679
           Y  R PP   D +G S+   S L+  GGA       L+LE       +L+ A+ +G+GPL
Sbjct: 141 YRGRAPPGGGDPQGRSVTLRSSLYRAGGAYGPGTPELLLEGAETVTPVLDPARRQGYGPL 200

Query: 680 SVHGISMGG 706
               +  GG
Sbjct: 201 WYTSVGFGG 209

>sp|Q862Z7|TNFC_PANTR Lymphotoxin-beta (LT-beta) (Tumor necrosis factor C) (TNF-C) (Tumor
           necrosis factor ligand superfamily member 3)
          Length = 244

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 14/69 (20%)
 Frame = +2

Query: 542 YGSRKPP---DQKGSSLKFLSDLFVMGGA-------LILE----TQVLLNWAKNEGFGPL 679
           Y  R PP   D +G S+   S L+  GGA       L+LE       +L+ A+ +G+GPL
Sbjct: 141 YRGRTPPGGGDPQGRSVTLRSSLYRAGGAYGPGTPELLLEGAETVTPVLDPARRQGYGPL 200

Query: 680 SVHGISMGG 706
               +  GG
Sbjct: 201 WYTSVGFGG 209

>sp|Q5E9W5|G3ST4_BOVIN Galactose-3-O-sulfotransferase 4 (Galbeta1-3GalNAc
           3'-sulfotransferase)
           (Beta-galactose-3-O-sulfotransferase 4)
          Length = 483

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = +2

Query: 2   FVLKRIFSKKPSDSFFY*ILKD--ILKKSLFLFNVSFS*EMSAIDKLYRKAPLFKMF 166
           F LK +    PSDSFF+ I++D   L +S F +  S S         +RKAP    F
Sbjct: 139 FNLKEVLQVMPSDSFFFSIVRDPAALARSAFSYYKSTS-------SAFRKAPSLAAF 188

>sp|Q89AW8|RNFC_BUCBP Electron transport complex protein rnfC
          Length = 505

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = +3

Query: 48  FIKF*KIYLKNLYFCLTYHFRKR*VLLINYIEKLLYLKCSPKD 176
           FIK+  IY+K L+F     F+K  V+ I  ++ +L+LK S ++
Sbjct: 4   FIKYISIYIKKLFFLNISFFKK--VISIFQVDNILFLKKSSQE 44

>sp|Q8GC87|FDHB_DESGI Formate dehydrogenase beta subunit (FDH beta subunit) (Formate
           dehydrogenase small subunit)
          Length = 215

 Score = 30.0 bits (66), Expect = 8.8
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +2

Query: 347 LPDTMDENNRVARFQLLIPKMTNKYKPLCIHYSGTGDHNY 466
           +P  + E+N++A+  + I ++TN  +P C+    TG  N+
Sbjct: 125 VPRKVAESNQMAKCDMCIDRITNGLRPACVTSCPTGAMNF 164

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,694,866
Number of Sequences: 369166
Number of extensions: 1828133
Number of successful extensions: 4712
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4711
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8694177530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00318

  1. Dr_sW_008_H12
  2. Dr_sW_028_K03