Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_H12
(867 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P28234|CXA5_RAT Gap junction alpha-5 protein (Connexin-4... 31 3.9
sp|Q06643|TNFC_HUMAN Lymphotoxin-beta (LT-beta) (Tumor necr... 31 3.9
sp|Q862Z7|TNFC_PANTR Lymphotoxin-beta (LT-beta) (Tumor necr... 31 3.9
sp|Q5E9W5|G3ST4_BOVIN Galactose-3-O-sulfotransferase 4 (Gal... 30 6.6
sp|Q89AW8|RNFC_BUCBP Electron transport complex protein rnfC 30 6.6
sp|Q8GC87|FDHB_DESGI Formate dehydrogenase beta subunit (FD... 30 8.7
>sp|P28234|CXA5_RAT Gap junction alpha-5 protein (Connexin-40) (Cx40)
Length = 356
Score = 31.2 bits (69), Expect = 3.9
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -1
Query: 783 EAVVQERQGIKHTGSG*TATPRQAI*PPIDIP*TLK-GPNPSFFAQFSKT*VSNINAPPI 607
+ + + RQG KH G + + Q + PP D LK P+ FF+ FS S N P+
Sbjct: 235 QRLAKSRQGDKHQLLGPSTSLVQGLTPPPDFNQCLKNSPDEKFFSDFSNNMGSRKNPDPL 294
Query: 606 TNKSDRN 586
+ N
Sbjct: 295 ATEEVPN 301
>sp|Q06643|TNFC_HUMAN Lymphotoxin-beta (LT-beta) (Tumor necrosis factor C) (TNF-C) (Tumor
necrosis factor ligand superfamily member 3)
Length = 244
Score = 31.2 bits (69), Expect = 3.9
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 14/69 (20%)
Frame = +2
Query: 542 YGSRKPP---DQKGSSLKFLSDLFVMGGA-------LILE----TQVLLNWAKNEGFGPL 679
Y R PP D +G S+ S L+ GGA L+LE +L+ A+ +G+GPL
Sbjct: 141 YRGRAPPGGGDPQGRSVTLRSSLYRAGGAYGPGTPELLLEGAETVTPVLDPARRQGYGPL 200
Query: 680 SVHGISMGG 706
+ GG
Sbjct: 201 WYTSVGFGG 209
>sp|Q862Z7|TNFC_PANTR Lymphotoxin-beta (LT-beta) (Tumor necrosis factor C) (TNF-C) (Tumor
necrosis factor ligand superfamily member 3)
Length = 244
Score = 31.2 bits (69), Expect = 3.9
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 14/69 (20%)
Frame = +2
Query: 542 YGSRKPP---DQKGSSLKFLSDLFVMGGA-------LILE----TQVLLNWAKNEGFGPL 679
Y R PP D +G S+ S L+ GGA L+LE +L+ A+ +G+GPL
Sbjct: 141 YRGRTPPGGGDPQGRSVTLRSSLYRAGGAYGPGTPELLLEGAETVTPVLDPARRQGYGPL 200
Query: 680 SVHGISMGG 706
+ GG
Sbjct: 201 WYTSVGFGG 209
>sp|Q5E9W5|G3ST4_BOVIN Galactose-3-O-sulfotransferase 4 (Galbeta1-3GalNAc
3'-sulfotransferase)
(Beta-galactose-3-O-sulfotransferase 4)
Length = 483
Score = 30.4 bits (67), Expect = 6.6
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +2
Query: 2 FVLKRIFSKKPSDSFFY*ILKD--ILKKSLFLFNVSFS*EMSAIDKLYRKAPLFKMF 166
F LK + PSDSFF+ I++D L +S F + S S +RKAP F
Sbjct: 139 FNLKEVLQVMPSDSFFFSIVRDPAALARSAFSYYKSTS-------SAFRKAPSLAAF 188
>sp|Q89AW8|RNFC_BUCBP Electron transport complex protein rnfC
Length = 505
Score = 30.4 bits (67), Expect = 6.6
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = +3
Query: 48 FIKF*KIYLKNLYFCLTYHFRKR*VLLINYIEKLLYLKCSPKD 176
FIK+ IY+K L+F F+K V+ I ++ +L+LK S ++
Sbjct: 4 FIKYISIYIKKLFFLNISFFKK--VISIFQVDNILFLKKSSQE 44
>sp|Q8GC87|FDHB_DESGI Formate dehydrogenase beta subunit (FDH beta subunit) (Formate
dehydrogenase small subunit)
Length = 215
Score = 30.0 bits (66), Expect = 8.7
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +2
Query: 347 LPDTMDENNRVARFQLLIPKMTNKYKPLCIHYSGTGDHNY 466
+P + E+N++A+ + I ++TN +P C+ TG N+
Sbjct: 125 VPRKVAESNQMAKCDMCIDRITNGLRPACVTSCPTGAMNF 164
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,850,941
Number of Sequences: 369166
Number of extensions: 1811408
Number of successful extensions: 4653
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4652
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8550075140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)