Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_K03
(734 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q06643|TNFC_HUMAN Lymphotoxin-beta (LT-beta) (Tumor necr... 31 3.0
sp|Q862Z7|TNFC_PANTR Lymphotoxin-beta (LT-beta) (Tumor necr... 31 3.0
sp|P16456|SELD_ECOLI Selenide, water dikinase (Selenophosph... 30 6.7
sp|P59393|SELD_SHIFL Selenide, water dikinase (Selenophosph... 30 6.7
sp|P66793|SELD_ECOL6 Selenide, water dikinase (Selenophosph... 30 6.7
sp|Q8GC87|FDHB_DESGI Formate dehydrogenase beta subunit (FD... 30 6.7
sp|Q90508|VIT1_FUNHE Vitellogenin I precursor (VTG I) [Cont... 30 8.7
>sp|Q06643|TNFC_HUMAN Lymphotoxin-beta (LT-beta) (Tumor necrosis factor C) (TNF-C) (Tumor
necrosis factor ligand superfamily member 3)
Length = 244
Score = 31.2 bits (69), Expect = 3.0
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 14/69 (20%)
Frame = +3
Query: 411 YGSRKPP---DQKGSSLKFLSDLFVMGGA-------LILE----TQVLLNWAKNEGFGPL 548
Y R PP D +G S+ S L+ GGA L+LE +L+ A+ +G+GPL
Sbjct: 141 YRGRAPPGGGDPQGRSVTLRSSLYRAGGAYGPGTPELLLEGAETVTPVLDPARRQGYGPL 200
Query: 549 SVHGISMGG 575
+ GG
Sbjct: 201 WYTSVGFGG 209
>sp|Q862Z7|TNFC_PANTR Lymphotoxin-beta (LT-beta) (Tumor necrosis factor C) (TNF-C) (Tumor
necrosis factor ligand superfamily member 3)
Length = 244
Score = 31.2 bits (69), Expect = 3.0
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 14/69 (20%)
Frame = +3
Query: 411 YGSRKPP---DQKGSSLKFLSDLFVMGGA-------LILE----TQVLLNWAKNEGFGPL 548
Y R PP D +G S+ S L+ GGA L+LE +L+ A+ +G+GPL
Sbjct: 141 YRGRTPPGGGDPQGRSVTLRSSLYRAGGAYGPGTPELLLEGAETVTPVLDPARRQGYGPL 200
Query: 549 SVHGISMGG 575
+ GG
Sbjct: 201 WYTSVGFGG 209
>sp|P16456|SELD_ECOLI Selenide, water dikinase (Selenophosphate synthetase) (Selenium
donor protein)
Length = 347
Score = 30.0 bits (66), Expect = 6.7
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Frame = +3
Query: 369 LKNGVASLIHTNPFYGSRKPPDQKG--SSLKFLSDLFVMGGALILETQVLLNWAKNEGFG 542
L NG + + T+ F P G ++ +SD+F MGG I+ +L W N+
Sbjct: 57 LGNGTSVISTTDFFMPIVDNPFDFGRIAATNAISDIFAMGGKPIMAI-AILGWPINK-LS 114
Query: 543 PLSVHGISMGGHMAC--LGVAVTQNQCVD 623
P ++ GG AC G+A+ +D
Sbjct: 115 PEIAREVTEGGRYACRQAGIALAGGHSID 143
>sp|P59393|SELD_SHIFL Selenide, water dikinase (Selenophosphate synthetase) (Selenium
donor protein)
Length = 347
Score = 30.0 bits (66), Expect = 6.7
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Frame = +3
Query: 369 LKNGVASLIHTNPFYGSRKPPDQKG--SSLKFLSDLFVMGGALILETQVLLNWAKNEGFG 542
L NG + + T+ F P G ++ +SD+F MGG I+ +L W N+
Sbjct: 57 LGNGTSVISTTDFFMPIVDNPFDFGRIAATNAISDIFAMGGKPIMAI-AILGWPINK-LS 114
Query: 543 PLSVHGISMGGHMAC--LGVAVTQNQCVD 623
P ++ GG AC G+A+ +D
Sbjct: 115 PEIAREVTEGGRYACRQAGIALAGGHSID 143
>sp|P66793|SELD_ECOL6 Selenide, water dikinase (Selenophosphate synthetase) (Selenium
donor protein)
sp|P66794|SELD_ECO57 Selenide, water dikinase (Selenophosphate synthetase) (Selenium
donor protein)
Length = 347
Score = 30.0 bits (66), Expect = 6.7
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 4/89 (4%)
Frame = +3
Query: 369 LKNGVASLIHTNPFYGSRKPPDQKG--SSLKFLSDLFVMGGALILETQVLLNWAKNEGFG 542
L NG + + T+ F P G ++ +SD+F MGG I+ +L W N+
Sbjct: 57 LGNGTSVISTTDFFMPIVDNPFDFGRIAATNAISDIFAMGGKPIMAI-AILGWPINK-LS 114
Query: 543 PLSVHGISMGGHMAC--LGVAVTQNQCVD 623
P ++ GG AC G+A+ +D
Sbjct: 115 PEIAREVTEGGRYACRQAGIALAGGHSID 143
>sp|Q8GC87|FDHB_DESGI Formate dehydrogenase beta subunit (FDH beta subunit) (Formate
dehydrogenase small subunit)
Length = 215
Score = 30.0 bits (66), Expect = 6.7
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = +3
Query: 216 LPDTMDENNRVARFQLLIPKMTNKYKPLCIHYSGTGDHNY 335
+P + E+N++A+ + I ++TN +P C+ TG N+
Sbjct: 125 VPRKVAESNQMAKCDMCIDRITNGLRPACVTSCPTGAMNF 164
>sp|Q90508|VIT1_FUNHE Vitellogenin I precursor (VTG I) [Contains: Lipovitellin 1 (LV1);
Phosvitin (PV); Lipovitellin 2 (LV2)]
Length = 1704
Score = 29.6 bits (65), Expect = 8.7
Identities = 19/55 (34%), Positives = 29/55 (52%)
Frame = -3
Query: 495 ISMHLPLQTNLIEILSLNPFDLVAF*SHKMDWYESKKQLHFLEDYWLKTIFFGNN 331
++MHLP+ + EI L+PFD V H M + + F+ED T++ NN
Sbjct: 1406 VTMHLPMCIPIDEIKGLSPFDEVIDKIHFMVSKAAAAECSFVED----TLYTFNN 1456
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,471,343
Number of Sequences: 369166
Number of extensions: 1600135
Number of successful extensions: 4048
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4047
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6582889600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)