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Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00315
         (901 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q85230|CELF_PRVKA  Cell fusion protein precursor (Syncyti...    30   7.0  
sp|Q6KC51|ABLM2_RAT  Actin-binding LIM protein 2 (Actin-bind...    30   7.0  

>sp|Q85230|CELF_PRVKA Cell fusion protein precursor (Syncytial protein) (Glycoprotein K)
          Length = 312

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = +2

Query: 404 GNQSLIGTKVCGGCGSTVVPGVTTKPGCFAIVMCLLIALIL 526
           G ++ +G  VCG C STV+ G+  K    A+ +CLL+  +L
Sbjct: 265 GGRAALG--VCGACCSTVLAGIFAK----ALYLCLLVGGVL 299

>sp|Q6KC51|ABLM2_RAT Actin-binding LIM protein 2 (Actin-binding LIM protein family
           member 2) (abLIM2)
          Length = 612

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 10/88 (11%)
 Frame = +2

Query: 371 CQNTKTTTIVVGNQSLI--GTKVCGGCGSTVVPGVTTKP-------GCFAIVMCLLIALI 523
           CQ     T+V GN + +  G + CGGCG  +  G            GCF    C  +   
Sbjct: 131 CQKCSPPTLV-GNSAHVAQGLRSCGGCGLEIKNGQALVALDKHWHLGCFKCKTCGKLLNA 189

Query: 524 LPYGCCFIPFCAAGFQDVYHI-CPNCNK 604
                  +P+C A +   + I C  C K
Sbjct: 190 EYISKDGLPYCEADYHTKFGIRCDGCEK 217

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,854,418
Number of Sequences: 369166
Number of extensions: 1233202
Number of successful extensions: 3610
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3597
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9078450570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

1. Dr_sW_008_G16
2. Dr_sW_024_I05
3. Dr_sW_016_A01
4. Dr_sW_012_A14