Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_016_A01
(858 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q85230|CELF_PRVKA Cell fusion protein precursor (Syncyti... 30 6.6
sp|Q6KC51|ABLM2_RAT Actin-binding LIM protein 2 (Actin-bind... 30 6.6
>sp|Q85230|CELF_PRVKA Cell fusion protein precursor (Syncytial protein) (Glycoprotein K)
Length = 312
Score = 30.4 bits (67), Expect = 6.6
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +1
Query: 397 GNQSLIGTKVCGGCGSTVVPGVTTKPGCFAIVMCLLIALIL 519
G ++ +G VCG C STV+ G+ K A+ +CLL+ +L
Sbjct: 265 GGRAALG--VCGACCSTVLAGIFAK----ALYLCLLVGGVL 299
>sp|Q6KC51|ABLM2_RAT Actin-binding LIM protein 2 (Actin-binding LIM protein family
member 2) (abLIM2)
Length = 612
Score = 30.4 bits (67), Expect = 6.6
Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 10/88 (11%)
Frame = +1
Query: 364 CQNTKTTTIVVGNQSLI--GTKVCGGCGSTVVPGVTTKP-------GCFAIVMCLLIALI 516
CQ T+V GN + + G + CGGCG + G GCF C +
Sbjct: 131 CQKCSPPTLV-GNSAHVAQGLRSCGGCGLEIKNGQALVALDKHWHLGCFKCKTCGKLLNA 189
Query: 517 LPYGCCFIPFCAAGFQDVYHI-CPNCNK 597
+P+C A + + I C C K
Sbjct: 190 EYISKDGLPYCEADYHTKFGIRCDGCEK 217
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,109,344
Number of Sequences: 369166
Number of extensions: 1148662
Number of successful extensions: 3343
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3330
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8486520240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)