Planaria EST Database

DrC_00311

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00311
         (846 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Z2M6|UBL3_MOUSE  Ubiquitin-like protein 3 (HCG-1 protein)     78   4e-14
sp|O95164|UBL3_HUMAN  Ubiquitin-like protein 3 (HCG-1 protein)     78   4e-14
sp|Q9MAB9|Y3105_ARATH  Protein At3g01050                           32   1.7  
sp|Q6MG49|BAT3_RAT  Large proline-rich protein BAT3 (HLA-B-a...    32   2.2  
sp|P46379|BAT3_HUMAN  Large proline-rich protein BAT3 (HLA-B...    30   6.4  
sp|Q9Z1R2|BAT3_MOUSE  Large proline-rich protein BAT3 (HLA-B...    30   6.4  
sp|Q8KFQ4|GATA_CHLTE  Glutamyl-tRNA(Gln) amidotransferase su...    30   6.4  

>sp|Q9Z2M6|UBL3_MOUSE Ubiquitin-like protein 3 (HCG-1 protein)
          Length = 117

 Score = 77.8 bits (190), Expect = 4e-14
 Identities = 38/97 (39%), Positives = 62/97 (63%), Gaps = 3/97 (3%)
 Frame = +1

Query: 49  VSGKSCTIEFTSSTTVSEVCEYIFNNWPDDWDEK--PDDNILRLIYHGRFLSFDMKLQDL 222
           VSGK+    F+ + + S++ +++++NWP DW+E+     NILRLIY GRFL  ++ L  L
Sbjct: 17  VSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGAL 76

Query: 223 NLPDG-LVVMHLIFRKSIPQPGTQEDVKKSKSPSHSC 330
            LP G   VMHL+ R+++P+P +Q    + K+   +C
Sbjct: 77  KLPFGKTTVMHLVARETLPEPNSQGQRNREKTGESNC 113

>sp|O95164|UBL3_HUMAN Ubiquitin-like protein 3 (HCG-1 protein)
          Length = 117

 Score = 77.8 bits (190), Expect = 4e-14
 Identities = 38/97 (39%), Positives = 62/97 (63%), Gaps = 3/97 (3%)
 Frame = +1

Query: 49  VSGKSCTIEFTSSTTVSEVCEYIFNNWPDDWDEK--PDDNILRLIYHGRFLSFDMKLQDL 222
           VSGK+    F+ + + S++ +++++NWP DW+E+     NILRLIY GRFL  ++ L  L
Sbjct: 17  VSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGAL 76

Query: 223 NLPDG-LVVMHLIFRKSIPQPGTQEDVKKSKSPSHSC 330
            LP G   VMHL+ R+++P+P +Q    + K+   +C
Sbjct: 77  KLPFGKTTVMHLVARETLPEPNSQGQRNREKTGESNC 113

>sp|Q9MAB9|Y3105_ARATH Protein At3g01050
          Length = 117

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
 Frame = +1

Query: 76  FTSSTTVSEVCEYIFNNWPDDWDEKPDD-NILRLIYHGRFLSFDMKLQDL-----NLPDG 237
           F  +TTVS + E + + WP + +  P     ++LI  G+ L     ++D      NL   
Sbjct: 25  FPDATTVSALKETVISEWpreKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA 84

Query: 238 LVVMHLIFRKSIPQPGTQEDVKKSKSP 318
           +  MH+I    I  P T+++ K    P
Sbjct: 85  VTTMHVI----IQAPVTEKEKKPKGDP 107

>sp|Q6MG49|BAT3_RAT Large proline-rich protein BAT3 (HLA-B-associated transcript 3)
          Length = 1096

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 18/32 (56%), Positives = 21/32 (65%)
 Frame = +1

Query: 169 RLIYHGRFLSFDMKLQDLNLPDGLVVMHLIFR 264
           RLIY GR L  D KLQD N+  G  V+HL+ R
Sbjct: 58  RLIYQGRVLQDDKKLQDYNV--GGKVIHLVER 87

>sp|P46379|BAT3_HUMAN Large proline-rich protein BAT3 (HLA-B-associated transcript 3)
           (G3)
          Length = 1132

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 17/32 (53%), Positives = 21/32 (65%)
 Frame = +1

Query: 169 RLIYHGRFLSFDMKLQDLNLPDGLVVMHLIFR 264
           RLIY GR L  D KLQ+ N+  G  V+HL+ R
Sbjct: 58  RLIYQGRVLQDDKKLQEYNV--GGKVIHLVER 87

>sp|Q9Z1R2|BAT3_MOUSE Large proline-rich protein BAT3 (HLA-B-associated transcript 3)
          Length = 1154

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 17/32 (53%), Positives = 21/32 (65%)
 Frame = +1

Query: 169 RLIYHGRFLSFDMKLQDLNLPDGLVVMHLIFR 264
           RLIY GR L  D KLQ+ N+  G  V+HL+ R
Sbjct: 58  RLIYQGRVLQDDKKLQEYNV--GGKVIHLVER 87

>sp|Q8KFQ4|GATA_CHLTE Glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A)
          Length = 481

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
 Frame = +1

Query: 106 CEYIFNNWPDDWDEKPDDNILRLIYH----GRFLSFDMKLQDLNLPDGLVVMHLIFRKSI 273
           CE + +++    D   DDNI  +++H     R    D KLQ    P  L  M +  + +I
Sbjct: 20  CEQVISDYLQRIDSSRDDNIFTVVFHDEAMARARELDSKLQRGEAPGVLFGMPIAIKDNI 79

Query: 274 PQPG 285
              G
Sbjct: 80  AMKG 83

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,369,293
Number of Sequences: 369166
Number of extensions: 1494871
Number of successful extensions: 3626
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3621
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8293644780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00311

  1. Dr_sW_008_F16
  2. Dr_sW_008_N15