Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_N15
(827 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Z2M6|UBL3_MOUSE Ubiquitin-like protein 3 (HCG-1 protein) 89 1e-17
sp|O95164|UBL3_HUMAN Ubiquitin-like protein 3 (HCG-1 protein) 89 1e-17
sp|Q9MAB9|Y3105_ARATH Protein At3g01050 32 1.6
sp|Q6MG49|BAT3_RAT Large proline-rich protein BAT3 (HLA-B-a... 32 2.1
sp|P46379|BAT3_HUMAN Large proline-rich protein BAT3 (HLA-B... 30 6.2
sp|Q9Z1R2|BAT3_MOUSE Large proline-rich protein BAT3 (HLA-B... 30 6.2
sp|Q8KFQ4|GATA_CHLTE Glutamyl-tRNA(Gln) amidotransferase su... 30 6.2
>sp|Q9Z2M6|UBL3_MOUSE Ubiquitin-like protein 3 (HCG-1 protein)
Length = 117
Score = 89.4 bits (220), Expect = 1e-17
Identities = 43/105 (40%), Positives = 70/105 (66%), Gaps = 3/105 (2%)
Frame = +3
Query: 6 MVNLKLLLVSGKSCTIEFTSSTTVSEVCEYIFNNWPDDWDEK--PDDNILRLIYHGRFLS 179
M+NL+L+LVSGK+ F+ + + S++ +++++NWP DW+E+ NILRLIY GRFL
Sbjct: 9 MINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLH 68
Query: 180 FDMKLQDLNLPDG-LVVMHLIFRKSIPQPGTQEDVKKSKSPSHSC 311
++ L L LP G VMHL+ R+++P+P +Q + K+ +C
Sbjct: 69 GNVTLGALKLPFGKTTVMHLVARETLPEPNSQGQRNREKTGESNC 113
>sp|O95164|UBL3_HUMAN Ubiquitin-like protein 3 (HCG-1 protein)
Length = 117
Score = 89.4 bits (220), Expect = 1e-17
Identities = 43/105 (40%), Positives = 70/105 (66%), Gaps = 3/105 (2%)
Frame = +3
Query: 6 MVNLKLLLVSGKSCTIEFTSSTTVSEVCEYIFNNWPDDWDEK--PDDNILRLIYHGRFLS 179
M+NL+L+LVSGK+ F+ + + S++ +++++NWP DW+E+ NILRLIY GRFL
Sbjct: 9 MINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLH 68
Query: 180 FDMKLQDLNLPDG-LVVMHLIFRKSIPQPGTQEDVKKSKSPSHSC 311
++ L L LP G VMHL+ R+++P+P +Q + K+ +C
Sbjct: 69 GNVTLGALKLPFGKTTVMHLVARETLPEPNSQGQRNREKTGESNC 113
>sp|Q9MAB9|Y3105_ARATH Protein At3g01050
Length = 117
Score = 32.3 bits (72), Expect = 1.6
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Frame = +3
Query: 57 FTSSTTVSEVCEYIFNNWPDDWDEKPDD-NILRLIYHGRFLSFDMKLQDL-----NLPDG 218
F +TTVS + E + + WP + + P ++LI G+ L ++D NL
Sbjct: 25 FPDATTVSALKETVISEWpreKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA 84
Query: 219 LVVMHLIFRKSIPQPGTQEDVKKSKSP 299
+ MH+I I P T+++ K P
Sbjct: 85 VTTMHVI----IQAPVTEKEKKPKGDP 107
>sp|Q6MG49|BAT3_RAT Large proline-rich protein BAT3 (HLA-B-associated transcript 3)
Length = 1096
Score = 32.0 bits (71), Expect = 2.1
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = +3
Query: 150 RLIYHGRFLSFDMKLQDLNLPDGLVVMHLIFR 245
RLIY GR L D KLQD N+ G V+HL+ R
Sbjct: 58 RLIYQGRVLQDDKKLQDYNV--GGKVIHLVER 87
>sp|P46379|BAT3_HUMAN Large proline-rich protein BAT3 (HLA-B-associated transcript 3)
(G3)
Length = 1132
Score = 30.4 bits (67), Expect = 6.2
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +3
Query: 150 RLIYHGRFLSFDMKLQDLNLPDGLVVMHLIFR 245
RLIY GR L D KLQ+ N+ G V+HL+ R
Sbjct: 58 RLIYQGRVLQDDKKLQEYNV--GGKVIHLVER 87
>sp|Q9Z1R2|BAT3_MOUSE Large proline-rich protein BAT3 (HLA-B-associated transcript 3)
Length = 1154
Score = 30.4 bits (67), Expect = 6.2
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +3
Query: 150 RLIYHGRFLSFDMKLQDLNLPDGLVVMHLIFR 245
RLIY GR L D KLQ+ N+ G V+HL+ R
Sbjct: 58 RLIYQGRVLQDDKKLQEYNV--GGKVIHLVER 87
>sp|Q8KFQ4|GATA_CHLTE Glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A)
Length = 481
Score = 30.4 bits (67), Expect = 6.2
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Frame = +3
Query: 87 CEYIFNNWPDDWDEKPDDNILRLIYH----GRFLSFDMKLQDLNLPDGLVVMHLIFRKSI 254
CE + +++ D DDNI +++H R D KLQ P L M + + +I
Sbjct: 20 CEQVISDYLQRIDSSRDDNIFTVVFHDEAMARARELDSKLQRGEAPGVLFGMPIAIKDNI 79
Query: 255 PQPG 266
G
Sbjct: 80 AMKG 83
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,396,590
Number of Sequences: 369166
Number of extensions: 1484560
Number of successful extensions: 3650
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3645
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8004331590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)