Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_008_F16
(787 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Z2M6|UBL3_MOUSE Ubiquitin-like protein 3 (HCG-1 protein) 78 3e-14
sp|O95164|UBL3_HUMAN Ubiquitin-like protein 3 (HCG-1 protein) 78 3e-14
sp|Q9MAB9|Y3105_ARATH Protein At3g01050 32 1.5
sp|Q6MG49|BAT3_RAT Large proline-rich protein BAT3 (HLA-B-a... 32 2.0
sp|P46379|BAT3_HUMAN Large proline-rich protein BAT3 (HLA-B... 30 5.7
sp|Q9Z1R2|BAT3_MOUSE Large proline-rich protein BAT3 (HLA-B... 30 5.7
sp|Q8KFQ4|GATA_CHLTE Glutamyl-tRNA(Gln) amidotransferase su... 30 5.7
sp|Q9UNY4|TTF2_HUMAN Transcription termination factor 2 (RN... 30 9.8
>sp|Q9Z2M6|UBL3_MOUSE Ubiquitin-like protein 3 (HCG-1 protein)
Length = 117
Score = 77.8 bits (190), Expect = 3e-14
Identities = 38/97 (39%), Positives = 62/97 (63%), Gaps = 3/97 (3%)
Frame = +1
Query: 49 VSGKSCTIEFTSSTTVSEVCEYIFNNWPDDWDEK--PDDNILRLIYHGRFLSFDMKLQDL 222
VSGK+ F+ + + S++ +++++NWP DW+E+ NILRLIY GRFL ++ L L
Sbjct: 17 VSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGAL 76
Query: 223 NLPDG-LVVMHLIFRKSIPQPGTQEDVKKSKSPSHSC 330
LP G VMHL+ R+++P+P +Q + K+ +C
Sbjct: 77 KLPFGKTTVMHLVARETLPEPNSQGQRNREKTGESNC 113
>sp|O95164|UBL3_HUMAN Ubiquitin-like protein 3 (HCG-1 protein)
Length = 117
Score = 77.8 bits (190), Expect = 3e-14
Identities = 38/97 (39%), Positives = 62/97 (63%), Gaps = 3/97 (3%)
Frame = +1
Query: 49 VSGKSCTIEFTSSTTVSEVCEYIFNNWPDDWDEK--PDDNILRLIYHGRFLSFDMKLQDL 222
VSGK+ F+ + + S++ +++++NWP DW+E+ NILRLIY GRFL ++ L L
Sbjct: 17 VSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGAL 76
Query: 223 NLPDG-LVVMHLIFRKSIPQPGTQEDVKKSKSPSHSC 330
LP G VMHL+ R+++P+P +Q + K+ +C
Sbjct: 77 KLPFGKTTVMHLVARETLPEPNSQGQRNREKTGESNC 113
>sp|Q9MAB9|Y3105_ARATH Protein At3g01050
Length = 117
Score = 32.3 bits (72), Expect = 1.5
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Frame = +1
Query: 76 FTSSTTVSEVCEYIFNNWPDDWDEKPDD-NILRLIYHGRFLSFDMKLQDL-----NLPDG 237
F +TTVS + E + + WP + + P ++LI G+ L ++D NL
Sbjct: 25 FPDATTVSALKETVISEWpreKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA 84
Query: 238 LVVMHLIFRKSIPQPGTQEDVKKSKSP 318
+ MH+I I P T+++ K P
Sbjct: 85 VTTMHVI----IQAPVTEKEKKPKGDP 107
>sp|Q6MG49|BAT3_RAT Large proline-rich protein BAT3 (HLA-B-associated transcript 3)
Length = 1096
Score = 32.0 bits (71), Expect = 2.0
Identities = 18/32 (56%), Positives = 21/32 (65%)
Frame = +1
Query: 169 RLIYHGRFLSFDMKLQDLNLPDGLVVMHLIFR 264
RLIY GR L D KLQD N+ G V+HL+ R
Sbjct: 58 RLIYQGRVLQDDKKLQDYNV--GGKVIHLVER 87
>sp|P46379|BAT3_HUMAN Large proline-rich protein BAT3 (HLA-B-associated transcript 3)
(G3)
Length = 1132
Score = 30.4 bits (67), Expect = 5.7
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +1
Query: 169 RLIYHGRFLSFDMKLQDLNLPDGLVVMHLIFR 264
RLIY GR L D KLQ+ N+ G V+HL+ R
Sbjct: 58 RLIYQGRVLQDDKKLQEYNV--GGKVIHLVER 87
>sp|Q9Z1R2|BAT3_MOUSE Large proline-rich protein BAT3 (HLA-B-associated transcript 3)
Length = 1154
Score = 30.4 bits (67), Expect = 5.7
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +1
Query: 169 RLIYHGRFLSFDMKLQDLNLPDGLVVMHLIFR 264
RLIY GR L D KLQ+ N+ G V+HL+ R
Sbjct: 58 RLIYQGRVLQDDKKLQEYNV--GGKVIHLVER 87
>sp|Q8KFQ4|GATA_CHLTE Glutamyl-tRNA(Gln) amidotransferase subunit A (Glu-ADT subunit A)
Length = 481
Score = 30.4 bits (67), Expect = 5.7
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Frame = +1
Query: 106 CEYIFNNWPDDWDEKPDDNILRLIYH----GRFLSFDMKLQDLNLPDGLVVMHLIFRKSI 273
CE + +++ D DDNI +++H R D KLQ P L M + + +I
Sbjct: 20 CEQVISDYLQRIDSSRDDNIFTVVFHDEAMARARELDSKLQRGEAPGVLFGMPIAIKDNI 79
Query: 274 PQPG 285
G
Sbjct: 80 AMKG 83
>sp|Q9UNY4|TTF2_HUMAN Transcription termination factor 2 (RNA polymerase II termination
factor) (Transcription release factor 2) (Factor 2) (F2)
(HuF2) (Lodestar homolog)
Length = 1162
Score = 29.6 bits (65), Expect = 9.8
Identities = 22/95 (23%), Positives = 48/95 (50%), Gaps = 8/95 (8%)
Frame = +1
Query: 58 KSCTIEFTSSTTVSEVCEYIFNNWPDDWDEKPDDNILRL-IYHGRFLSFDMKLQDLNLPD 234
K + +FTS T+ + ++W ++ +++ + N LR+ +YHG + D + + L+ D
Sbjct: 633 KDDSCDFTSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGP--NRDSRARVLSTYD 690
Query: 235 GLVVMHLIFRKSIPQ-------PGTQEDVKKSKSP 318
++ + + K IP PG +V+ + +P
Sbjct: 691 IVITTYSLVAKEIPTNKQEAEIPGANLNVEGTSTP 725
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,688,068
Number of Sequences: 369166
Number of extensions: 1264948
Number of successful extensions: 3269
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3265
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7405750800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)